Rw1G017510

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0015197
Physical Location & Seq
Reverse (-)
38679918 .. 38682758
2841 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G017510.1

Sequence Viewer

Length: 1092 bp
ATGTTAATGGAGGTCGAGACTGTTCTTCAAACTCAGGAACCTGTGATAAGACCCTCATGGAATACATTTTCTAGTAGTGTCAGTGGGATATGGAAGGGTGTTGGAGCAGTTTTTTCACCCATCACTGCAGAAATGGAGCCAATTGATTTTGGAAGCAGGGATGAACAACTTTATGATTGCTATACTCTTTCTCGCATTGAGGCTGTGCCATCATCCTCTGGAGGGCCAGCATCACATGTCCAAAGGAAAATTAATTGGGTGACTTTAAATCCTCATGGTGAAAAAAGCAATAGTAATGAAAGTGGAAGAAATCATGTGTTGCCTCAATTTGAGGCCTTTAACTTTGAAAGAAGTGACGTGATGGAAGAAGATGTCATGGGCAGAGAACCTGGTCTTGTTTTCTTTGAGGATGGATCTTATTCTAGGGGTCCTGTTGATATCCCAGTTGGTGAAATTGATGATTCTAACTATTACCTTTCACCAACTTTCAAATTTGAACAGTGCTTGGTTAAAGGTTGCCACAAGAGACTTCGAATTGTTCATACCATAGAATTCAGCAATGGTGGTTCAAACATTCAGATAATGAGAGTTGCTGTGTATGAGGAACAGTGGGTTAGCCCTGTCAATCTTCTGGACCTAAGTGATTCGGAGCTTGATTTGAAACCATTTTCTCAGCGGAAACGAACTCAGTCATCAGAGCTGGCTGGGCCATGGAAGGTGTTTGAGGTCAGTGCTACTCCAATTTATGGTGAGGAGATGGAACAGATGGTGTTGGAGCAAGAGAATAGCGTTCCCTATGTCTACCTTTGCACAGAGGCTTTAAAGAAAAGGAGCTTGCCTGGGCATGCTGCTTACTTTGGTGAGGAAGAGATGCTAGACATGCAAGATGTGACAATGCTTTGGCTTCCAGGTGGTGTCACTGCCTATGTTGATGTAAATAAGGATGGCATCCTTTGTATTGGAGTTGGGTGGTACTCAGATGAAGGAATCAACCTTGTTATGGAGAGGGATTATGGAATAGATGGGAAACTCAAGGACATCCGATCGAAGTCAGAAATGAAAAGAAGGTGGTCGGATCCTCAGCCCGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

363

Amino Acids

41.05

Weight (kDa)

4.7

Isoelectric Point (pI)

56.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015197)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G44760
fragaria_vesca FvH4_7g10380
malus_domestica MD07G1109900.v1.1
prunus_persica Prupe.2G133500_v2.0.a1
pyrus_communis pycom07g09470
rosa_chinensis RchiOBHm_Chr1g0348081
rosa_laevigata RLG00000028692
rosa_multiflora Rmu_sc0000253.1_g000019 Rmu_sc0002523.1_g000001
rosa_roxburghii Rroxscaffold_4G00307250
rosa_rugosa Rorug01G0192200
rosa_samantha Rh1AG209900 Rh1BG175500 Rh1CG194300 Rh1DG205300
rosa_wichuraiana Rw1G017510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 746
AccI GTMKAC 1 cut(s) 801
AciI CCGC 1 cut(s) 676
AclWI GGATC 3 cut(s) 421, 1070, 1083
AcsI RAATTY 2 cut(s) 491, 551
AfaI GTAC 1 cut(s) 974
AfiI CCNNNNNNNGG 3 cut(s) 222, 746, 1000
AflIII ACRYGT 1 cut(s) 235
AgsI TTSAA 6 cut(s) 29, 347, 490, 497, 570, 661
AjiI CACGTC 1 cut(s) 358
AjnI CCWGG 3 cut(s) 388, 838, 907
AluBI AGCT 3 cut(s) 652, 700, 834
AluI AGCT 3 cut(s) 652, 700, 834
Alw26I GTCTC 2 cut(s) 11, 520
AlwI GGATC 3 cut(s) 421, 1070, 1083
Ama87I CYCGRG 1 cut(s) 1085
AoxI GGCC 3 cut(s) 224, 333, 707
ApeKI GCWGC 1 cut(s) 848
ApoI RAATTY 2 cut(s) 491, 551
AseI ATTAAT 1 cut(s) 252
AspS9I GGNCC 4 cut(s) 224, 428, 634, 707
AsuHPI GGTGA 7 cut(s) 108, 271, 290, 461, 471, 761, 872
AsuII TTCGAA 1 cut(s) 532
AvaI CYCGRG 1 cut(s) 1085
AvaII GGWCC 2 cut(s) 428, 634
BamHI GGATCC 1 cut(s) 1075
BbvCI CCTCAGC 1 cut(s) 1080
BbvI GCAGC 1 cut(s) 835
BccI CCATC 8 cut(s) 128, 217, 355, 404, 751, 760, 938, 1016
BciT130I CCWGG 3 cut(s) 390, 840, 909
BcoDI GTCTC 2 cut(s) 11, 520
BfaI CTAG 3 cut(s) 72, 423, 875
BfmI CTRYAG 1 cut(s) 126
BisI GCNGC 1 cut(s) 849
BlsI GCNGC 1 cut(s) 850
Bme1390I CCNGG 3 cut(s) 390, 840, 909
Bme18I GGWCC 2 cut(s) 428, 634
BmeT110I CYCGRG 1 cut(s) 1085
BmgBI CACGTC 1 cut(s) 358
BmgT120I GGNCC 4 cut(s) 224, 428, 634, 707
BmiI GGNNCC 4 cut(s) 39, 138, 429, 1077
BmrFI CCNGG 3 cut(s) 390, 840, 909
BmrI ACTGGG 1 cut(s) 437
BmsI GCATC 3 cut(s) 239, 861, 957
BmuI ACTGGG 1 cut(s) 437
BpmI CTGGAG 1 cut(s) 240
Bpu10I CCTNAGC 1 cut(s) 1080
Bpu14I TTCGAA 1 cut(s) 532
BpuEI CTTGAG 1 cut(s) 1016
BsaJI CCNNGG 2 cut(s) 710, 839
Bsc4I CCNNNNNNNGG 3 cut(s) 222, 746, 1000
Bse1I ACTGG 1 cut(s) 443
Bse3DI GCAATG 1 cut(s) 565
BseBI CCWGG 3 cut(s) 390, 840, 909
BseDI CCNNGG 2 cut(s) 710, 839
BseGI GGATG 6 cut(s) 166, 212, 415, 948, 949, 1038
BseLI CCNNNNNNNGG 3 cut(s) 222, 746, 1000
BseMI GCAATG 1 cut(s) 565
BseMII CTCAG 4 cut(s) 47, 686, 701, 990
BseNI ACTGG 1 cut(s) 443
BseRI GAGGAG 1 cut(s) 767
BseXI GCAGC 1 cut(s) 835
BseYI CCCAGC 1 cut(s) 704
Bsh1285I CGRYCG 1 cut(s) 1046
BshFI GGCC 3 cut(s) 226, 335, 709
BsiEI CGRYCG 1 cut(s) 1046
BsiHKCI CYCGRG 1 cut(s) 1085
BslI CCNNNNNNNGG 3 cut(s) 222, 746, 1000
BsmAI GTCTC 2 cut(s) 11, 520
BsnI GGCC 3 cut(s) 226, 335, 709
BsoBI CYCGRG 1 cut(s) 1085
Bsp119I TTCGAA 1 cut(s) 532
Bsp143I GATC 3 cut(s) 413, 1043, 1075
Bsp19I CCATGG 1 cut(s) 710
BspACI CCGC 1 cut(s) 676
BspANI GGCC 3 cut(s) 226, 335, 709
BspCNI CTCAG 4 cut(s) 46, 685, 700, 989
BspLI GGNNCC 4 cut(s) 39, 138, 429, 1077
BspMAI CTGCAG 1 cut(s) 130
BspPI GGATC 3 cut(s) 421, 1070, 1083
BspT104I TTCGAA 1 cut(s) 532
BsrDI GCAATG 1 cut(s) 565
BsrI ACTGG 1 cut(s) 443
BssECI CCNNGG 2 cut(s) 710, 839
BssMI GATC 3 cut(s) 413, 1043, 1075
BssT1I CCWWGG 1 cut(s) 710
Bst2UI CCWGG 3 cut(s) 390, 840, 909
Bst4CI ACNGT 3 cut(s) 22, 501, 609
Bst6I CTCTTC 1 cut(s) 861
BstBI TTCGAA 1 cut(s) 532
BstC8I GCNNGC 4 cut(s) 228, 702, 836, 846
BstDEI CTNAG 6 cut(s) 33, 638, 672, 687, 976, 1080
BstDSI CCRYGG 1 cut(s) 710
BstF5I GGATG 6 cut(s) 166, 212, 415, 948, 949, 1038
BstKTI GATC 3 cut(s) 416, 1046, 1078
BstMAI GTCTC 2 cut(s) 11, 520
BstMBI GATC 3 cut(s) 413, 1043, 1075
BstMCI CGRYCG 1 cut(s) 1046
BstMWI GCNNNNNNNGC 2 cut(s) 706, 880
BstNI CCWGG 3 cut(s) 390, 840, 909
BstNSI RCATGY 3 cut(s) 239, 848, 883
BstSCI CCNGG 3 cut(s) 388, 838, 907
BstSFI CTRYAG 1 cut(s) 126
BstV1I GCAGC 1 cut(s) 835
BstX2I RGATCY 2 cut(s) 413, 1075
BstYI RGATCY 2 cut(s) 413, 1075
BsuRI GGCC 3 cut(s) 226, 335, 709
BtgI CCRYGG 1 cut(s) 710
BtrI CACGTC 1 cut(s) 358
BtsCI GGATG 6 cut(s) 166, 212, 415, 948, 949, 1038
BtsI GCAGTG 2 cut(s) 123, 918
BtsIMutI CAGTG 6 cut(s) 88, 123, 506, 614, 736, 918
Cac8I GCNNGC 4 cut(s) 228, 702, 836, 846
Cfr13I GGNCC 4 cut(s) 224, 428, 634, 707
CsiI ACCWGGT 1 cut(s) 388
Csp6I GTAC 1 cut(s) 973
CviAII CATG 8 cut(s) 57, 236, 275, 314, 376, 711, 845, 880
CviQI GTAC 1 cut(s) 973
DdeI CTNAG 6 cut(s) 33, 638, 672, 687, 976, 1080
DpnI GATC 3 cut(s) 415, 1045, 1077
DpnII GATC 3 cut(s) 413, 1043, 1075
DraI TTTAAA 2 cut(s) 267, 822
Eam1104I CTCTTC 1 cut(s) 861
EarI CTCTTC 1 cut(s) 861
Eco130I CCWWGG 1 cut(s) 710
Eco147I AGGCCT 1 cut(s) 335
Eco32I GATATC 1 cut(s) 439
Eco47I GGWCC 2 cut(s) 428, 634
Eco88I CYCGRG 1 cut(s) 1085
EcoO109I RGGNCCY 1 cut(s) 428
EcoRI GAATTC 1 cut(s) 551
EcoRII CCWGG 3 cut(s) 388, 838, 907
EcoRV GATATC 1 cut(s) 439
EcoT14I CCWWGG 1 cut(s) 710
ErhI CCWWGG 1 cut(s) 710
FaeI CATG 8 cut(s) 60, 239, 278, 317, 379, 714, 848, 883
FatI CATG 8 cut(s) 56, 235, 274, 313, 375, 710, 844, 879
FblI GTMKAC 1 cut(s) 801
Fnu4HI GCNGC 1 cut(s) 849
FokI GGATG 6 cut(s) 173, 199, 422, 935, 956, 1025
Fsp4HI GCNGC 1 cut(s) 849
FspBI CTAG 3 cut(s) 72, 423, 875
GluI GCNGC 1 cut(s) 849
GsaI CCCAGC 1 cut(s) 708
GsuI CTGGAG 1 cut(s) 240
HaeIII GGCC 3 cut(s) 226, 335, 709
Hin1II CATG 8 cut(s) 60, 239, 278, 317, 379, 714, 848, 883
HinfI GANTC 3 cut(s) 461, 644, 987
HphI GGTGA 7 cut(s) 108, 271, 290, 461, 471, 761, 872
Hpy166II GTNNAC 1 cut(s) 802
Hpy188I TCNGA 7 cut(s) 579, 649, 697, 979, 1043, 1054, 1075
Hpy188III TCNNGA 4 cut(s) 16, 35, 219, 632
Hpy8I GTNNAC 1 cut(s) 802
HpyAV CCTTC 4 cut(s) 88, 709, 977, 1059
HpyCH4III ACNGT 3 cut(s) 22, 501, 609
HpyCH4IV ACGT 1 cut(s) 357
HpyCH4V TGCA 3 cut(s) 128, 810, 883
HpyF10VI GCNNNNNNNGC 2 cut(s) 706, 880
HpyF3I CTNAG 6 cut(s) 33, 638, 672, 687, 976, 1080
HpySE526I ACGT 1 cut(s) 357
Hsp92II CATG 8 cut(s) 60, 239, 278, 317, 379, 714, 848, 883
Kzo9I GATC 3 cut(s) 413, 1043, 1075
LmnI GCTCC 5 cut(s) 104, 136, 649, 775, 831
Lsp1109I GCAGC 1 cut(s) 835
LweI GCATC 3 cut(s) 239, 861, 957
MabI ACCWGGT 1 cut(s) 388
MaeI CTAG 3 cut(s) 72, 423, 875
MaeII ACGT 1 cut(s) 357
MaeIII GTNAC 4 cut(s) 259, 353, 889, 916
MalI GATC 3 cut(s) 415, 1045, 1077
MboI GATC 3 cut(s) 413, 1043, 1075
MboII GAAGA 6 cut(s) 17, 318, 377, 380, 620, 878
MfeI CAATTG 1 cut(s) 141
MflI RGATCY 2 cut(s) 413, 1075
MluCI AATT 9 cut(s) 141, 249, 253, 326, 453, 491, 534, 551, 741
MmeI TCCRAC 3 cut(s) 82, 753, 1053
MseI TTAA 6 cut(s) 5, 252, 266, 339, 510, 821
MspA1I CMGCKG 1 cut(s) 676
MspR9I CCNGG 3 cut(s) 390, 840, 909
MunI CAATTG 1 cut(s) 141
MvaI CCWGG 3 cut(s) 390, 840, 909
MwoI GCNNNNNNNGC 2 cut(s) 706, 880
NcoI CCATGG 1 cut(s) 710
NdeII GATC 3 cut(s) 413, 1043, 1075
NlaIII CATG 8 cut(s) 60, 239, 278, 317, 379, 714, 848, 883
NlaIV GGNNCC 4 cut(s) 39, 138, 429, 1077
NmuCI GTSAC 4 cut(s) 259, 353, 889, 916
NspI RCATGY 3 cut(s) 239, 848, 883
NspV TTCGAA 1 cut(s) 532
PaeI GCATGC 1 cut(s) 848
PceI AGGCCT 1 cut(s) 335
PciI ACATGT 1 cut(s) 235
PfeI GAWTC 3 cut(s) 461, 644, 987
PflMI CCANNNNNTGG 1 cut(s) 746
PkrI GCNGC 1 cut(s) 850
Ple19I CGATCG 1 cut(s) 1046
PpuMI RGGWCCY 1 cut(s) 428
PscI ACATGT 1 cut(s) 235
PshBI ATTAAT 1 cut(s) 252
Psp5II RGGWCCY 1 cut(s) 428
Psp6I CCWGG 3 cut(s) 388, 838, 907
PspFI CCCAGC 1 cut(s) 704
PspGI CCWGG 3 cut(s) 388, 838, 907
PspN4I GGNNCC 4 cut(s) 39, 138, 429, 1077
PspPI GGNCC 4 cut(s) 224, 428, 634, 707
PspPPI RGGWCCY 1 cut(s) 428
PstI CTGCAG 1 cut(s) 130
PsuI RGATCY 2 cut(s) 413, 1075
PvuI CGATCG 1 cut(s) 1046
RsaI GTAC 1 cut(s) 974
RsaNI GTAC 1 cut(s) 973
SaqAI TTAA 6 cut(s) 5, 252, 266, 339, 510, 821
SatI GCNGC 1 cut(s) 849
Sau3AI GATC 3 cut(s) 413, 1043, 1075
Sau96I GGNCC 4 cut(s) 224, 428, 634, 707
ScrFI CCNGG 3 cut(s) 390, 840, 909
SexAI ACCWGGT 1 cut(s) 388
SfaNI GCATC 3 cut(s) 239, 861, 957
SfcI CTRYAG 1 cut(s) 126
SfuI TTCGAA 1 cut(s) 532
SinI GGWCC 2 cut(s) 428, 634
SmlI CTYRAG 1 cut(s) 1031
SmoI CTYRAG 1 cut(s) 1031
SphI GCATGC 1 cut(s) 848
Sse9I AATT 9 cut(s) 141, 249, 253, 326, 453, 491, 534, 551, 741
SseBI AGGCCT 1 cut(s) 335
SsiI CCGC 1 cut(s) 676
SspMI CTAG 3 cut(s) 72, 423, 875
StuI AGGCCT 1 cut(s) 335
StyD4I CCNGG 3 cut(s) 388, 838, 907
StyI CCWWGG 1 cut(s) 710
TaaI ACNGT 3 cut(s) 22, 501, 609
TaiI ACGT 1 cut(s) 360
TaqI TCGA 3 cut(s) 15, 532, 1046
TasI AATT 9 cut(s) 141, 249, 253, 326, 453, 491, 534, 551, 741
TfiI GAWTC 3 cut(s) 461, 644, 987
Tru1I TTAA 6 cut(s) 5, 252, 266, 339, 510, 821
Tru9I TTAA 6 cut(s) 5, 252, 266, 339, 510, 821
TscAI CASTG 6 cut(s) 88, 130, 506, 614, 736, 925
TseFI GTSAC 4 cut(s) 259, 353, 889, 916
TseI GCWGC 1 cut(s) 848
Tsp45I GTSAC 4 cut(s) 259, 353, 889, 916
TspDTI ATGAA 5 cut(s) 177, 312, 530, 996, 1073
TspRI CASTG 6 cut(s) 88, 130, 506, 614, 736, 925
Van91I CCANNNNNTGG 1 cut(s) 746
VpaK11BI GGWCC 2 cut(s) 428, 634
VspI ATTAAT 1 cut(s) 252
XapI RAATTY 2 cut(s) 491, 551
XceI RCATGY 3 cut(s) 239, 848, 883
XmiI GTMKAC 1 cut(s) 801
XspI CTAG 3 cut(s) 72, 423, 875
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.