Rorug01G0192200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0015197
Physical Location & Seq
Reverse (-)
26660972 .. 26661734
763 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0192200.1

Sequence Viewer

Length: 477 bp
ATGGCATGTAAGACGCTGCTACGAGTACAGAAGTACAGTGCACCTCCATTAGGGGAGTATGTGACTGGGCTCAATGCTCACACTGACAAAGCATTGACCGCAATACTTTGTGATGATCAAGTTTCAGGGCTTGAATTTGAAACTAAAGACGGACAATGGATCAAGTTGTCTCTGCCTCCTAGTTCCTTTTTCTTTATTGTTGGAGATCCTCTTATGGCATGGAGTAATGGAAGAATGCATTCTGTAAAGCATCGAGTGATGATGTGTGGAGAAAAAGAACGATATTCGTTAGGAGCATTTGGAGTTCCAGTAGAGGGTACCATCATCAAGGCACCAAAGGAGTTAGTAGATGAAGAACATCCACAAATCTTTAAAGACTTTGACTATATGGATTTTAGTATGTTTGGCCTTTCAGCGGAAGCAATGGCCATCGACTCAGCAATGCAAATTTCAGCTTTTGCAGGAATCAGTAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

158

Amino Acids

17.43

Weight (kDa)

5.13

Isoelectric Point (pI)

28.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
2OG-FeII_Oxy PF03171 7 - 100 2.4e-17 2OG-Fe(II) oxygenase superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015197)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G44760
fragaria_vesca FvH4_7g10380
malus_domestica MD07G1109900.v1.1
prunus_persica Prupe.2G133500_v2.0.a1
pyrus_communis pycom07g09470
rosa_chinensis RchiOBHm_Chr1g0348081
rosa_laevigata RLG00000028692
rosa_multiflora Rmu_sc0000253.1_g000019 Rmu_sc0002523.1_g000001
rosa_roxburghii Rroxscaffold_4G00307250
rosa_rugosa Rorug01G0192200
rosa_samantha Rh1AG209900 Rh1BG175500 Rh1CG194300 Rh1DG205300
rosa_wichuraiana Rw1G017510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 317
AccB1I GGYRCC 2 cut(s) 317, 331
AciI CCGC 2 cut(s) 99, 416
AclWI GGATC 2 cut(s) 167, 200
AcoI YGGCCR 1 cut(s) 426
AcsI RAATTY 2 cut(s) 134, 447
AfaI GTAC 3 cut(s) 27, 35, 319
AfiI CCNNNNNNNGG 3 cut(s) 50, 314, 415
AgsI TTSAA 2 cut(s) 134, 140
AluBI AGCT 2 cut(s) 455, 474
AluI AGCT 2 cut(s) 455, 474
Alw21I GWGCWC 1 cut(s) 43
Alw26I GTCTC 1 cut(s) 174
Alw44I GTGCAC 1 cut(s) 39
AlwI GGATC 2 cut(s) 167, 200
AlwNI CAGNNNCTG 1 cut(s) 474
AoxI GGCC 2 cut(s) 406, 426
ApaLI GTGCAC 1 cut(s) 39
ApeKI GCWGC 1 cut(s) 16
ApoI RAATTY 2 cut(s) 134, 447
Asp700I GAANNNNTTC 1 cut(s) 238
Asp718I GGTACC 1 cut(s) 317
BaeGI GKGCMC 1 cut(s) 43
BalI TGGCCA 1 cut(s) 428
BanI GGYRCC 2 cut(s) 317, 331
BanII GRGCYC 1 cut(s) 72
Bbv12I GWGCWC 1 cut(s) 43
BbvI GCAGC 1 cut(s) 3
BccI CCATC 2 cut(s) 329, 437
BclI TGATCA 1 cut(s) 115
BcoDI GTCTC 1 cut(s) 174
BfaI CTAG 1 cut(s) 180
BisI GCNGC 1 cut(s) 17
BlsI GCNGC 1 cut(s) 18
BmiI GGNNCC 2 cut(s) 319, 333
BmrI ACTGGG 1 cut(s) 75
BmsI GCATC 1 cut(s) 259
BmuI ACTGGG 1 cut(s) 75
BsaXI ACNNNNNCTCC 2 cut(s) 294, 324
Bsc4I CCNNNNNNNGG 3 cut(s) 50, 314, 415
Bse1I ACTGG 2 cut(s) 70, 308
Bse3DI GCAATG 2 cut(s) 429, 447
BseGI GGATG 1 cut(s) 358
BseLI CCNNNNNNNGG 3 cut(s) 50, 314, 415
BseMI GCAATG 2 cut(s) 429, 447
BseMII CTCAG 1 cut(s) 450
BseNI ACTGG 2 cut(s) 70, 308
BseSI GKGCMC 1 cut(s) 43
BseXI GCAGC 1 cut(s) 3
BshFI GGCC 2 cut(s) 408, 428
BshNI GGYRCC 2 cut(s) 317, 331
BsiHKAI GWGCWC 1 cut(s) 43
BslI CCNNNNNNNGG 3 cut(s) 50, 314, 415
BsmAI GTCTC 1 cut(s) 174
BsmI GAATGC 2 cut(s) 238, 240
BsnI GGCC 2 cut(s) 408, 428
Bsp1286I GDGCHC 2 cut(s) 43, 72
Bsp143I GATC 3 cut(s) 115, 159, 205
BspACI CCGC 2 cut(s) 99, 416
BspANI GGCC 2 cut(s) 408, 428
BspCNI CTCAG 1 cut(s) 449
BspLI GGNNCC 2 cut(s) 319, 333
BspPI GGATC 2 cut(s) 167, 200
BspT107I GGYRCC 2 cut(s) 317, 331
BsrDI GCAATG 2 cut(s) 429, 447
BsrI ACTGG 2 cut(s) 70, 308
BssMI GATC 3 cut(s) 115, 159, 205
Bst4CI ACNGT 1 cut(s) 38
BstDEI CTNAG 1 cut(s) 436
BstENI CCTNNNNNAGG 1 cut(s) 48
BstF5I GGATG 1 cut(s) 358
BstKTI GATC 3 cut(s) 118, 162, 208
BstMAI GTCTC 1 cut(s) 174
BstMBI GATC 3 cut(s) 115, 159, 205
BstMWI GCNNNNNNNGC 1 cut(s) 98
BstNSI RCATGY 1 cut(s) 9
BstSLI GKGCMC 1 cut(s) 43
BstV1I GCAGC 1 cut(s) 3
BstX2I RGATCY 1 cut(s) 205
BstYI RGATCY 1 cut(s) 205
BsuRI GGCC 2 cut(s) 408, 428
BtsCI GGATG 1 cut(s) 358
BtsIMutI CAGTG 2 cut(s) 43, 81
CaiI CAGNNNCTG 1 cut(s) 474
CseI GACGC 1 cut(s) 22
Csp6I GTAC 3 cut(s) 26, 34, 318
CviAII CATG 2 cut(s) 6, 219
CviJI RGCY 6 cut(s) 70, 130, 408, 428, 455, 474
CviKI_1 RGCY 6 cut(s) 70, 130, 408, 428, 455, 474
CviQI GTAC 3 cut(s) 26, 34, 318
DdeI CTNAG 1 cut(s) 436
DpnI GATC 3 cut(s) 117, 161, 207
DpnII GATC 3 cut(s) 115, 159, 205
DraI TTTAAA 1 cut(s) 373
EaeI YGGCCR 1 cut(s) 426
Eco24I GRGCYC 1 cut(s) 72
EcoNI CCTNNNNNAGG 1 cut(s) 48
EcoT22I ATGCAT 1 cut(s) 240
EcoT38I GRGCYC 1 cut(s) 72
FaeI CATG 2 cut(s) 9, 222
FaiI YATR 7 cut(s) 7, 60, 215, 220, 387, 389, 401
FatI CATG 2 cut(s) 5, 218
FbaI TGATCA 1 cut(s) 115
Fnu4HI GCNGC 1 cut(s) 17
FokI GGATG 1 cut(s) 345
FriOI GRGCYC 1 cut(s) 72
Fsp4HI GCNGC 1 cut(s) 17
FspBI CTAG 1 cut(s) 180
GluI GCNGC 1 cut(s) 17
HaeIII GGCC 2 cut(s) 408, 428
HgaI GACGC 1 cut(s) 22
Hin1II CATG 2 cut(s) 9, 222
HinfI GANTC 2 cut(s) 434, 465
Hpy166II GTNNAC 1 cut(s) 41
Hpy8I GTNNAC 1 cut(s) 41
HpyCH4III ACNGT 1 cut(s) 38
HpyCH4V TGCA 4 cut(s) 41, 238, 445, 461
HpyF10VI GCNNNNNNNGC 1 cut(s) 98
HpyF3I CTNAG 1 cut(s) 436
Hsp92II CATG 2 cut(s) 9, 222
KpnI GGTACC 1 cut(s) 321
Ksp22I TGATCA 1 cut(s) 115
Kzo9I GATC 3 cut(s) 115, 159, 205
LmnI GCTCC 1 cut(s) 293
LpnPI CCDG 4 cut(s) 51, 111, 321, 447
Lsp1109I GCAGC 1 cut(s) 3
LweI GCATC 1 cut(s) 259
MaeI CTAG 1 cut(s) 180
MaeIII GTNAC 1 cut(s) 61
MalI GATC 3 cut(s) 117, 161, 207
MboI GATC 3 cut(s) 115, 159, 205
MboII GAAGA 2 cut(s) 243, 365
MflI RGATCY 1 cut(s) 205
MhlI GDGCHC 2 cut(s) 43, 72
MlsI TGGCCA 1 cut(s) 428
MluCI AATT 2 cut(s) 134, 447
MluNI TGGCCA 1 cut(s) 428
MlyI GAGTC 1 cut(s) 428
MmeI TCCRAC 1 cut(s) 181
MnlI CCTC 4 cut(s) 54, 186, 219, 307
Mox20I TGGCCA 1 cut(s) 428
Mph1103I ATGCAT 1 cut(s) 240
MroXI GAANNNNTTC 1 cut(s) 238
MscI TGGCCA 1 cut(s) 428
MseI TTAA 1 cut(s) 372
Msp20I TGGCCA 1 cut(s) 428
MspA1I CMGCKG 1 cut(s) 416
Mva1269I GAATGC 2 cut(s) 238, 240
MwoI GCNNNNNNNGC 1 cut(s) 98
NdeII GATC 3 cut(s) 115, 159, 205
NlaIII CATG 2 cut(s) 9, 222
NlaIV GGNNCC 2 cut(s) 319, 333
NmuCI GTSAC 1 cut(s) 61
NsiI ATGCAT 1 cut(s) 240
NspI RCATGY 1 cut(s) 9
PctI GAATGC 2 cut(s) 238, 240
PdmI GAANNNNTTC 1 cut(s) 238
PfeI GAWTC 1 cut(s) 465
PkrI GCNGC 1 cut(s) 18
PleI GAGTC 1 cut(s) 428
PpsI GAGTC 1 cut(s) 428
PspN4I GGNNCC 2 cut(s) 319, 333
PstNI CAGNNNCTG 1 cut(s) 474
PsuI RGATCY 1 cut(s) 205
RsaI GTAC 3 cut(s) 27, 35, 319
RsaNI GTAC 3 cut(s) 26, 34, 318
SaqAI TTAA 1 cut(s) 372
SatI GCNGC 1 cut(s) 17
Sau3AI GATC 3 cut(s) 115, 159, 205
SchI GAGTC 1 cut(s) 428
SduI GDGCHC 2 cut(s) 43, 72
SetI ASST 3 cut(s) 46, 457, 476
SfaNI GCATC 1 cut(s) 259
Sse9I AATT 2 cut(s) 134, 447
SsiI CCGC 2 cut(s) 99, 416
SspMI CTAG 1 cut(s) 180
TaaI ACNGT 1 cut(s) 38
TaqI TCGA 2 cut(s) 253, 432
TasI AATT 2 cut(s) 134, 447
TatI WGTACW 2 cut(s) 25, 33
TfiI GAWTC 1 cut(s) 465
Tru1I TTAA 1 cut(s) 372
Tru9I TTAA 1 cut(s) 372
TscAI CASTG 2 cut(s) 43, 88
TseFI GTSAC 1 cut(s) 61
TseI GCWGC 1 cut(s) 16
Tsp45I GTSAC 1 cut(s) 61
TspDTI ATGAA 1 cut(s) 366
TspGWI ACGGA 1 cut(s) 165
TspRI CASTG 2 cut(s) 43, 88
VneI GTGCAC 1 cut(s) 39
XagI CCTNNNNNAGG 1 cut(s) 48
XapI RAATTY 2 cut(s) 134, 447
XceI RCATGY 1 cut(s) 9
XmnI GAANNNNTTC 1 cut(s) 238
XspI CTAG 1 cut(s) 180
Zsp2I ATGCAT 1 cut(s) 240
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.