Prupe.2G133500_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0015197
Physical Location & Seq
Reverse (-)
19126289 .. 19130551
4263 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G133500.1

Sequence Viewer

Length: 1524 bp
ATGCCCTCACCGTCGCTCCGGTTGTCCGCCACCACTCACCACCTCCATCACTTGGGGTTCAACCACACACTCTCCTCCTCGGCGGCCCAAAACCTCTTCACCTCTCTCTCCTTCCCCTCCTCCACTTTCCCAATATACCCTCGGAAGCTCGCTGCCCAGTGCCAGAAGAAACCAGCACCCAACAACAACGGTGGTAGAGCCAAGGTCAAGGGCAAAGCGGAAAATGTGTGGAGCGTGGACAACGAGCTCGCTGCGATGGAGAAAGAGAGAGGGAGAAGCCCGAAGAGGAGAGGCAAAAGGAGGGTTGTGAGGAGGAAGAGAAGTGAAGGCGGTGGCGGGAAAGGTGTGTTGGTCTCTGGTGCTATGTTAATGGAGGACGAGACCGTTCTTCAAACTCAGGAACCTGTGATAAGACCAGAATGGACTACATTTGCTAGTAGTGTCAGTGGGATATGGAAGGGCGTTGGAGCAGTATTTTCACCCATCAATGCTGAAATGGAGCCAATTGAAATCGGAAGCAGGGATGAACATCTATATGATTGCTATACTCTTTCCCACATTGAGGCCGTGCCATCCTATTCTGGAGGGCCAACATCTCAAATCAAAAGGAAGATTAATTGGGTGACTTTAAATCCTTTCGGTGAAATACCACAACATATTAGAGGAAGCAATAGAATGAAAGAAGAGCATGAAGGTGGAGACGCTGCTTCACACAAAAACGATATTGATGGAAGTGGAAAAAAACATGTTTTGCCTGAATTTGAGTCTTTTGATTTTGGAAGAAGTGACGTGATGGAAGAAGATGTCATGGATAAGGAACCTGGTCTTGTTTTCTTTGAGGATGGATCTTATTCTAGGGGTCCTGTTGATATCCCGGTTGGTGAAGATGATGACTCTAAGTATTACCTTTCACCAACTTTCAAATTTGAACAATGCTTGGTTAAAGGTTGCCACAAGAGGCTACGTATCGTTCATACTATAGAATTCAGCAATGGTGGTTCAAGCATACAGATAATGAGAGTTGCTGTTTATGAAGAAAAGTGGGTTAGTCCTGCCAATCTTCCTGACCCGAGTGATCTGGAGTTCGATTTGAAACCATTTTCTCAGCGCAAACGAACCCGACCATCAGAGCTGACTGGGTCATGGAAGGTGTTTGAGGTCAGTGGCACTCCAGTATTTGTTGAGGAGATAGACCAGATGGTAATGGAGCAAAACGATAGTACTCCGTATGTCTATCTTTGCACAGAAACTCTAAAGAAGAGGAGCTTGCCGGGGAATCCAGCGTACTTTGGAGAAGAAGAGATGCTAGACATGCAAGATGTGACTATGCTTTGGCTTCCGGGTGGTGTCACGGCCTATGTTGATGTAAACAAGGATGGCATCCTTTGCATTGGAGTCGGATGGTACTCAAATGAAGGGATCAACCTTGTTATGGAGAGGGATTATGGAGTAGATGGGAAACTTAAGGAGGTCCGATCAAAGTCGGAGGTAAAAAGAAGGTGGTCTGATCCACTACCTGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

508

Amino Acids

56.76

Weight (kDa)

6.07

Isoelectric Point (pI)

57.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015197)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G44760
fragaria_vesca FvH4_7g10380
malus_domestica MD07G1109900.v1.1
prunus_persica Prupe.2G133500_v2.0.a1
pyrus_communis pycom07g09470
rosa_chinensis RchiOBHm_Chr1g0348081
rosa_laevigata RLG00000028692
rosa_multiflora Rmu_sc0000253.1_g000019 Rmu_sc0002523.1_g000001
rosa_roxburghii Rroxscaffold_4G00307250
rosa_rugosa Rorug01G0192200
rosa_samantha Rh1AG209900 Rh1BG175500 Rh1CG194300 Rh1DG205300
rosa_wichuraiana Rw1G017510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 52
AciI CCGC 5 cut(s) 27, 83, 218, 330, 336
AclWI GGATC 3 cut(s) 853, 1427, 1502
AcsI RAATTY 3 cut(s) 758, 923, 983
AfaI GTAC 3 cut(s) 1222, 1286, 1406
AfiI CCNNNNNNNGG 3 cut(s) 52, 562, 1432
AflII CTTAAG 1 cut(s) 1463
AflIII ACRYGT 1 cut(s) 745
AgsI TTSAA 7 cut(s) 61, 392, 509, 922, 929, 1002, 1093
AjiI CACGTC 1 cut(s) 790
AjnI CCWGG 1 cut(s) 820
AjuI GAANNNNNNNTTGG 2 cut(s) 332, 364
AluBI AGCT 4 cut(s) 148, 247, 1132, 1266
AluI AGCT 4 cut(s) 148, 247, 1132, 1266
Alw21I GWGCWC 1 cut(s) 249
Alw26I GTCTC 3 cut(s) 358, 374, 693
AlwI GGATC 3 cut(s) 853, 1427, 1502
Ama87I CYCGRG 1 cut(s) 1069
AoxI GGCC 4 cut(s) 84, 564, 587, 1353
ApeKI GCWGC 3 cut(s) 152, 251, 704
ApoI RAATTY 3 cut(s) 758, 923, 983
AseI ATTAAT 1 cut(s) 615
AspLEI GCGC 1 cut(s) 1110
AspS9I GGNCC 4 cut(s) 85, 587, 860, 1471
AsuC2I CCSGG 3 cut(s) 875, 1272, 1341
AsuHPI GGTGA 7 cut(s) 29, 91, 471, 634, 653, 893, 903
AvaI CYCGRG 1 cut(s) 1069
AvaII GGWCC 2 cut(s) 860, 1471
BanII GRGCYC 1 cut(s) 249
Bbv12I GWGCWC 1 cut(s) 249
BbvI GCAGC 3 cut(s) 139, 238, 691
BceAI ACGGC 2 cut(s) 551, 1368
BcgI CGANNNNNNTGC 4 cut(s) 233, 267, 1378, 1412
BciT130I CCWGG 1 cut(s) 822
BcnI CCSGG 3 cut(s) 875, 1272, 1341
BcoDI GTCTC 3 cut(s) 358, 374, 693
BfaI CTAG 3 cut(s) 435, 855, 1307
BfmI CTRYAG 1 cut(s) 978
BfrI CTTAAG 1 cut(s) 1463
BisI GCNGC 4 cut(s) 84, 153, 252, 705
BlsI GCNGC 4 cut(s) 85, 154, 253, 706
BmcAI AGTACT 1 cut(s) 1222
Bme1390I CCNGG 4 cut(s) 822, 875, 1272, 1341
Bme18I GGWCC 2 cut(s) 860, 1471
BmeT110I CYCGRG 1 cut(s) 1069
BmgBI CACGTC 1 cut(s) 790
BmgT120I GGNCC 4 cut(s) 85, 587, 860, 1471
BmiI GGNNCC 4 cut(s) 402, 501, 819, 861
BmrFI CCNGG 4 cut(s) 822, 875, 1272, 1341
BmrI ACTGGG 2 cut(s) 151, 1146
BmsI GCATC 2 cut(s) 1293, 1389
BmuI ACTGGG 2 cut(s) 151, 1146
BpmI CTGGAG 3 cut(s) 603, 1100, 1155
BpuMI CCSGG 3 cut(s) 875, 1272, 1341
BsaAI YACGTR 1 cut(s) 965
BsaBI GATNNNNATC 1 cut(s) 528
BsaI GGTCTC 2 cut(s) 358, 374
BsaJI CCNNGG 4 cut(s) 78, 140, 201, 1271
BsaWI WCCGGW 1 cut(s) 18
BsaXI ACNNNNNCTCC 3 cut(s) 30, 56, 86
Bsc4I CCNNNNNNNGG 3 cut(s) 52, 562, 1432
Bse1I ACTGG 3 cut(s) 157, 1141, 1172
Bse3DI GCAATG 1 cut(s) 997
Bse8I GATNNNNATC 1 cut(s) 528
BseBI CCWGG 1 cut(s) 822
BseDI CCNNGG 4 cut(s) 78, 140, 201, 1271
BseGI GGATG 6 cut(s) 529, 572, 847, 1380, 1381, 1406
BseJI GATNNNNATC 1 cut(s) 528
BseLI CCNNNNNNNGG 3 cut(s) 52, 562, 1432
BseMI GCAATG 1 cut(s) 997
BseMII CTCAG 2 cut(s) 410, 1118
BseNI ACTGG 3 cut(s) 157, 1141, 1172
BseRI GAGGAG 7 cut(s) 64, 67, 109, 301, 325, 1199, 1276
BseXI GCAGC 3 cut(s) 139, 238, 691
BshFI GGCC 4 cut(s) 86, 566, 589, 1355
BsiHKAI GWGCWC 1 cut(s) 249
BsiHKCI CYCGRG 1 cut(s) 1069
BsiSI CCGG 4 cut(s) 19, 875, 1271, 1340
BslI CCNNNNNNNGG 3 cut(s) 52, 562, 1432
BsmAI GTCTC 3 cut(s) 358, 374, 693
BsmBI CGTCTC 1 cut(s) 693
BsnI GGCC 4 cut(s) 86, 566, 589, 1355
Bso31I GGTCTC 2 cut(s) 358, 374
BsoBI CYCGRG 1 cut(s) 1069
Bsp1286I GDGCHC 1 cut(s) 249
Bsp143I GATC 5 cut(s) 845, 1075, 1419, 1475, 1507
BspACI CCGC 5 cut(s) 27, 83, 218, 330, 336
BspANI GGCC 4 cut(s) 86, 566, 589, 1355
BspCNI CTCAG 2 cut(s) 409, 1117
BspLI GGNNCC 4 cut(s) 402, 501, 819, 861
BspPI GGATC 3 cut(s) 853, 1427, 1502
BspQI GCTCTTC 1 cut(s) 678
BspTI CTTAAG 1 cut(s) 1463
BspTNI GGTCTC 2 cut(s) 358, 374
BsrDI GCAATG 1 cut(s) 997
BsrI ACTGG 3 cut(s) 157, 1141, 1172
BssECI CCNNGG 4 cut(s) 78, 140, 201, 1271
BssMI GATC 5 cut(s) 845, 1075, 1419, 1475, 1507
BssT1I CCWWGG 1 cut(s) 201
Bst2UI CCWGG 1 cut(s) 822
Bst4CI ACNGT 3 cut(s) 12, 191, 385
Bst6I CTCTTC 6 cut(s) 101, 278, 311, 678, 1253, 1293
BstAFI CTTAAG 1 cut(s) 1463
BstAPI GCANNNNNTGC 1 cut(s) 1386
BstBAI YACGTR 1 cut(s) 965
BstC8I GCNNGC 3 cut(s) 150, 249, 1268
BstDEI CTNAG 3 cut(s) 396, 897, 1104
BstF5I GGATG 6 cut(s) 529, 572, 847, 1380, 1381, 1406
BstHHI GCGC 1 cut(s) 1110
BstKTI GATC 5 cut(s) 848, 1078, 1422, 1478, 1510
BstMAI GTCTC 3 cut(s) 358, 374, 693
BstMBI GATC 5 cut(s) 845, 1075, 1419, 1475, 1507
BstMWI GCNNNNNNNGC 2 cut(s) 1312, 1386
BstNI CCWGG 1 cut(s) 822
BstNSI RCATGY 2 cut(s) 749, 1315
BstSCI CCNGG 4 cut(s) 820, 873, 1270, 1339
BstSFI CTRYAG 1 cut(s) 978
BstSNI TACGTA 1 cut(s) 965
BstV1I GCAGC 3 cut(s) 139, 238, 691
BstX2I RGATCY 1 cut(s) 845
BstYI RGATCY 1 cut(s) 845
BsuRI GGCC 4 cut(s) 86, 566, 589, 1355
BtgZI GCGATG 1 cut(s) 269
BtrI CACGTC 1 cut(s) 790
BtsCI GGATG 6 cut(s) 529, 572, 847, 1380, 1381, 1406
BtsIMutI CAGTG 3 cut(s) 164, 451, 1168
Cac8I GCNNGC 3 cut(s) 150, 249, 1268
CfoI GCGC 1 cut(s) 1110
Cfr13I GGNCC 4 cut(s) 85, 587, 860, 1471
CseI GACGC 1 cut(s) 710
CsiI ACCWGGT 1 cut(s) 820
Csp6I GTAC 3 cut(s) 1221, 1285, 1405
CspCI CAANNNNNGTGG 2 cut(s) 172, 207
CviAII CATG 5 cut(s) 689, 746, 808, 1143, 1312
CviQI GTAC 3 cut(s) 1221, 1285, 1405
DdeI CTNAG 3 cut(s) 396, 897, 1104
DpnI GATC 5 cut(s) 847, 1077, 1421, 1477, 1509
DpnII GATC 5 cut(s) 845, 1075, 1419, 1475, 1507
DraI TTTAAA 1 cut(s) 630
Eam1104I CTCTTC 6 cut(s) 101, 278, 311, 678, 1253, 1293
EarI CTCTTC 6 cut(s) 101, 278, 311, 678, 1253, 1293
EciI GGCGGA 1 cut(s) 16
Ecl136II GAGCTC 1 cut(s) 247
Eco105I TACGTA 1 cut(s) 965
Eco130I CCWWGG 1 cut(s) 201
Eco24I GRGCYC 1 cut(s) 249
Eco31I GGTCTC 2 cut(s) 358, 374
Eco32I GATATC 1 cut(s) 871
Eco47I GGWCC 2 cut(s) 860, 1471
Eco53kI GAGCTC 1 cut(s) 247
Eco88I CYCGRG 1 cut(s) 1069
EcoICRI GAGCTC 1 cut(s) 247
EcoO109I RGGNCCY 1 cut(s) 860
EcoRI GAATTC 1 cut(s) 983
EcoRII CCWGG 1 cut(s) 820
EcoRV GATATC 1 cut(s) 871
EcoT14I CCWWGG 1 cut(s) 201
EcoT38I GRGCYC 1 cut(s) 249
ErhI CCWWGG 1 cut(s) 201
Esp3I CGTCTC 1 cut(s) 693
FaeI CATG 5 cut(s) 692, 749, 811, 1146, 1315
FalI AAGNNNNNCTT 2 cut(s) 1250, 1282
FatI CATG 5 cut(s) 688, 745, 807, 1142, 1311
FauI CCCGC 1 cut(s) 329
Fnu4HI GCNGC 4 cut(s) 84, 153, 252, 705
FokI GGATG 6 cut(s) 536, 559, 854, 1367, 1388, 1413
FriOI GRGCYC 1 cut(s) 249
Fsp4HI GCNGC 4 cut(s) 84, 153, 252, 705
FspBI CTAG 3 cut(s) 435, 855, 1307
GlaI GCGC 1 cut(s) 1109
GluI GCNGC 4 cut(s) 84, 153, 252, 705
GsuI CTGGAG 3 cut(s) 603, 1100, 1155
HaeIII GGCC 4 cut(s) 86, 566, 589, 1355
HapII CCGG 4 cut(s) 19, 875, 1271, 1340
HgaI GACGC 1 cut(s) 710
HhaI GCGC 1 cut(s) 1110
Hin1II CATG 5 cut(s) 692, 749, 811, 1146, 1315
Hin6I GCGC 1 cut(s) 1108
HinP1I GCGC 1 cut(s) 1108
HinfI GANTC 4 cut(s) 764, 893, 1276, 1395
HpaII CCGG 4 cut(s) 19, 875, 1271, 1340
HphI GGTGA 7 cut(s) 29, 91, 471, 634, 653, 893, 903
Hpy166II GTNNAC 2 cut(s) 238, 1369
Hpy188I TCNGA 7 cut(s) 144, 515, 1129, 1400, 1475, 1486, 1507
Hpy188III TCNNGA 4 cut(s) 398, 582, 1064, 1079
Hpy8I GTNNAC 2 cut(s) 238, 1369
Hpy99I CGWCG 1 cut(s) 16
HpyAV CCTTC 7 cut(s) 121, 320, 451, 686, 1141, 1409, 1491
HpyCH4III ACNGT 3 cut(s) 12, 191, 385
HpyCH4IV ACGT 2 cut(s) 789, 964
HpyCH4V TGCA 3 cut(s) 1242, 1315, 1389
HpyF10VI GCNNNNNNNGC 2 cut(s) 1312, 1386
HpyF3I CTNAG 3 cut(s) 396, 897, 1104
HpySE526I ACGT 2 cut(s) 789, 964
Hsp92II CATG 5 cut(s) 692, 749, 811, 1146, 1315
HspAI GCGC 1 cut(s) 1108
Kzo9I GATC 5 cut(s) 845, 1075, 1419, 1475, 1507
LguI GCTCTTC 1 cut(s) 678
LmnI GCTCC 6 cut(s) 21, 231, 467, 499, 1207, 1263
Lsp1109I GCAGC 3 cut(s) 139, 238, 691
LweI GCATC 2 cut(s) 1293, 1389
MabI ACCWGGT 1 cut(s) 820
MaeI CTAG 3 cut(s) 435, 855, 1307
MaeII ACGT 2 cut(s) 789, 964
MaeIII GTNAC 4 cut(s) 622, 785, 1321, 1348
MalI GATC 5 cut(s) 847, 1077, 1421, 1477, 1509
MboI GATC 5 cut(s) 845, 1075, 1419, 1475, 1507
MfeI CAATTG 1 cut(s) 504
MflI RGATCY 1 cut(s) 845
MhlI GDGCHC 1 cut(s) 249
MluCI AATT 5 cut(s) 504, 616, 758, 923, 983
MlyI GAGTC 3 cut(s) 773, 887, 1404
MmeI TCCRAC 3 cut(s) 445, 1378, 1464
MseI TTAA 5 cut(s) 368, 615, 629, 942, 1464
MslI CAYNNNNRTG 2 cut(s) 534, 693
MspCI CTTAAG 1 cut(s) 1463
MspI CCGG 4 cut(s) 19, 875, 1271, 1340
MspR9I CCNGG 4 cut(s) 822, 875, 1272, 1341
MunI CAATTG 1 cut(s) 504
MvaI CCWGG 1 cut(s) 822
MwoI GCNNNNNNNGC 2 cut(s) 1312, 1386
NciI CCSGG 3 cut(s) 875, 1272, 1341
NdeII GATC 5 cut(s) 845, 1075, 1419, 1475, 1507
NlaIII CATG 5 cut(s) 692, 749, 811, 1146, 1315
NlaIV GGNNCC 4 cut(s) 402, 501, 819, 861
NmeAIII GCCGAG 1 cut(s) 59
NmuCI GTSAC 4 cut(s) 622, 785, 1321, 1348
NspI RCATGY 2 cut(s) 749, 1315
PciI ACATGT 1 cut(s) 745
PciSI GCTCTTC 1 cut(s) 678
PfeI GAWTC 1 cut(s) 1276
PflFI GACNNNGTC 1 cut(s) 1138
PflMI CCANNNNNTGG 1 cut(s) 52
PkrI GCNGC 4 cut(s) 85, 154, 253, 706
PleI GAGTC 3 cut(s) 772, 887, 1403
PpsI GAGTC 3 cut(s) 772, 887, 1403
Ppu21I YACGTR 1 cut(s) 965
PpuMI RGGWCCY 1 cut(s) 860
PscI ACATGT 1 cut(s) 745
PshBI ATTAAT 1 cut(s) 615
Psp124BI GAGCTC 1 cut(s) 249
Psp5II RGGWCCY 1 cut(s) 860
Psp6I CCWGG 1 cut(s) 820
PspGI CCWGG 1 cut(s) 820
PspN4I GGNNCC 4 cut(s) 402, 501, 819, 861
PspPI GGNCC 4 cut(s) 85, 587, 860, 1471
PspPPI RGGWCCY 1 cut(s) 860
PsuI RGATCY 1 cut(s) 845
PsyI GACNNNGTC 1 cut(s) 1138
RsaI GTAC 3 cut(s) 1222, 1286, 1406
RsaNI GTAC 3 cut(s) 1221, 1285, 1405
RseI CAYNNNNRTG 2 cut(s) 534, 693
SacI GAGCTC 1 cut(s) 249
SapI GCTCTTC 1 cut(s) 678
SaqAI TTAA 5 cut(s) 368, 615, 629, 942, 1464
SatI GCNGC 4 cut(s) 84, 153, 252, 705
Sau3AI GATC 5 cut(s) 845, 1075, 1419, 1475, 1507
Sau96I GGNCC 4 cut(s) 85, 587, 860, 1471
ScaI AGTACT 1 cut(s) 1222
SchI GAGTC 3 cut(s) 773, 887, 1404
ScrFI CCNGG 4 cut(s) 822, 875, 1272, 1341
SduI GDGCHC 1 cut(s) 249
SexAI ACCWGGT 1 cut(s) 820
SfaNI GCATC 2 cut(s) 1293, 1389
SfcI CTRYAG 1 cut(s) 978
SinI GGWCC 2 cut(s) 860, 1471
SmiMI CAYNNNNRTG 2 cut(s) 534, 693
SmlI CTYRAG 1 cut(s) 1463
SmoI CTYRAG 1 cut(s) 1463
SnaBI TACGTA 1 cut(s) 965
Sse9I AATT 5 cut(s) 504, 616, 758, 923, 983
SsiI CCGC 5 cut(s) 27, 83, 218, 330, 336
SspMI CTAG 3 cut(s) 435, 855, 1307
SstI GAGCTC 1 cut(s) 249
StyD4I CCNGG 4 cut(s) 820, 873, 1270, 1339
StyI CCWWGG 1 cut(s) 201
TaaI ACNGT 3 cut(s) 12, 191, 385
TaiI ACGT 2 cut(s) 792, 967
TaqI TCGA 1 cut(s) 1086
TasI AATT 5 cut(s) 504, 616, 758, 923, 983
TatI WGTACW 1 cut(s) 1220
TauI GCSGC 1 cut(s) 86
TfiI GAWTC 1 cut(s) 1276
Tru1I TTAA 5 cut(s) 368, 615, 629, 942, 1464
Tru9I TTAA 5 cut(s) 368, 615, 629, 942, 1464
TscAI CASTG 3 cut(s) 164, 451, 1168
TseFI GTSAC 4 cut(s) 622, 785, 1321, 1348
TseI GCWGC 3 cut(s) 152, 251, 704
Tsp45I GTSAC 4 cut(s) 622, 785, 1321, 1348
TspDTI ATGAA 6 cut(s) 540, 692, 705, 962, 1047, 1428
TspGWI ACGGA 1 cut(s) 1215
TspRI CASTG 3 cut(s) 164, 451, 1168
Tth111I GACNNNGTC 1 cut(s) 1138
Van91I CCANNNNNTGG 1 cut(s) 52
Vha464I CTTAAG 1 cut(s) 1463
VpaK11BI GGWCC 2 cut(s) 860, 1471
VspI ATTAAT 1 cut(s) 615
XapI RAATTY 3 cut(s) 758, 923, 983
XceI RCATGY 2 cut(s) 749, 1315
XspI CTAG 3 cut(s) 435, 855, 1307
ZrmI AGTACT 1 cut(s) 1222
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.