pycom07g09470

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
OG0015197
Physical Location & Seq
Reverse (-)
8718900 .. 8722377
3478 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom07g09470.3

Sequence Viewer

Length: 1500 bp
ATGTCCTCACCGTCGCTCCGCCTGTCCACCACCACTCACCACCACTTGGGGTTCAACCACACACTCTCTTCCGCGGCGGCCCAAAACCTCTTCACCTCTCTTTCCTTCCCGCCCTCCACTTTCCCAAAATACCCTCGGAAGGTCGCTGCCCAGTGCCAAAAGAAACCAGTACCCAACAGCAGAGGCAGAGCCAGGAACTGGGGCTTGCTCAATGTGAAGGGAAAGTCGGACAATGTCTGGAGCATCGACAACGAGCTCGCTGCGAAGGATAAGGGGAGAGGGGGAAGCCCGAGGAGAAGAGACAAAAGGAGGGTTGTGAGGAGGAAGAGAAGCGATGACGGTGGCGGGAAAAGTGTGTTGGTCTCTGGTGCTATGTTAATGGAGGTCGAGACCGTTCTTCAAACTCAGGAACCTGTAATAAGACCAGCGTGGAATACATTTGCTAGTAGTGTCAGTGGGATATGGAAGGGGGTTGGAGCTGTCTTTTCACCTATCACTGCTGAAATGGAACCTATTGAAGTCGGAAGCAGGAATGAGCACCTATATGATTGCTATACTGTTTCTCGCATTGAGGATGTTCCATCTTCATCTGGAGGGCCAACATCTCAAATCCAGAGGAAGATTAATTGGGTGACTCTAAACCCTTATGGTGAAATACCACAGCATAAAGTTGGAGATGCAGCTTTACCCAAAAATTATGCTGACAGAAGTGGGAAAAATCGTGTTTTGCCTCAATTTGGGTCTTTTAACTTTGAAAGAAGTGATGTGATGGAAGAAGATCTCATGGGCAAGGAACCTGGTCTTGTTTTCTTTGAGGATGGATCTTATTCAAGGGGCCCTATTGATATCCCCGTTGGTGAAGTTGATGATTCTCAATATTACCTTTCACCAACTTTCAAATTTGAACAGTGCTTGGTTAAAGGTTGCCATAAGAGACTTCGTATCGTTCATACTATAGAATTCAGCAATGGTGGTTCAAACATACAGATAATGAGAGTAGCTGTTTATGAAGAACAGTGGGATAGCCCTGCCCATCTTCATGACCAAAGTGACCAGGAGTTGGATTTGAAACCCTTTTCTCAGCGCAAACGAACAAAGCCATCAGAGTTGGCTGGATCCTGGAAGGTATTTGAGGTCAGTGCCACTCCAATATTTGGTGAGGAGATAGATGAGATGTCTATGGCTCAAAACGATAGCACTCCATATGTCTATCTTTGCACAGAAACTCTAAAAAAGAGAAGCTTGCCTGGGAATCCAGTTTACTTTGGAGAAGAAGAGATGGTAGACATGCAAGATGTGACTATGCTTTGGCTACCGGGTGGTGTCACTGCCTATGTTGATGTAAATAAGGATGGCATCCTCTGCATTGGAGTCGGATGGTACTCTGATGAAGGGATCAACCTTGTTATGGAGAGGGATTATGGAGTAGATGGGAAACTCAAGGAGGTCCGATCAAAGTCAGAGGTAAAAAGACGGTGGTCTGATCCGCTACCTGCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

500

Amino Acids

55.83

Weight (kDa)

6.82

Isoelectric Point (pI)

56.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015197)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G44760
fragaria_vesca FvH4_7g10380
malus_domestica MD07G1109900.v1.1
prunus_persica Prupe.2G133500_v2.0.a1
pyrus_communis pycom07g09470
rosa_chinensis RchiOBHm_Chr1g0348081
rosa_laevigata RLG00000028692
rosa_multiflora Rmu_sc0000253.1_g000019 Rmu_sc0002523.1_g000001
rosa_roxburghii Rroxscaffold_4G00307250
rosa_rugosa Rorug01G0192200
rosa_samantha Rh1AG209900 Rh1BG175500 Rh1CG194300 Rh1DG205300
rosa_wichuraiana Rw1G017510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 4 cut(s) 46, 198, 1060, 1154
AccI GTMKAC 1 cut(s) 1284
AccII CGCG 1 cut(s) 74
AciI CCGC 7 cut(s) 19, 72, 74, 77, 110, 345, 1487
AclWI GGATC 5 cut(s) 829, 1110, 1123, 1403, 1478
AcsI RAATTY 2 cut(s) 899, 959
AfaI GTAC 2 cut(s) 171, 1382
AfiI CCNNNNNNNGG 7 cut(s) 46, 139, 198, 737, 1060, 1154, 1408
AgsI TTSAA 9 cut(s) 55, 401, 518, 755, 831, 898, 905, 978, 1069
AjnI CCWGG 5 cut(s) 191, 796, 1053, 1118, 1246
AjuI GAANNNNNNNTTGG 2 cut(s) 341, 373
AluBI AGCT 5 cut(s) 256, 479, 683, 1001, 1242
AluI AGCT 5 cut(s) 256, 479, 683, 1001, 1242
Alw21I GWGCWC 2 cut(s) 258, 540
Alw26I GTCTC 4 cut(s) 294, 367, 383, 928
AlwI GGATC 5 cut(s) 829, 1110, 1123, 1403, 1478
AlwNI CAGNNNCTG 1 cut(s) 198
Ama87I CYCGRG 1 cut(s) 289
AoxI GGCC 3 cut(s) 78, 596, 835
ApaI GGGCCC 1 cut(s) 839
ApeKI GCWGC 3 cut(s) 146, 260, 680
ApoI RAATTY 2 cut(s) 899, 959
AseI ATTAAT 1 cut(s) 624
AspLEI GCGC 1 cut(s) 1086
AspS9I GGNCC 5 cut(s) 79, 596, 835, 836, 1447
AsuC2I CCSGG 1 cut(s) 1317
AsuHPI GGTGA 8 cut(s) 29, 85, 480, 643, 662, 869, 879, 1169
AvaI CYCGRG 1 cut(s) 289
AvaII GGWCC 1 cut(s) 1447
BaeGI GKGCMC 1 cut(s) 839
BamHI GGATCC 1 cut(s) 1115
BanII GRGCYC 2 cut(s) 258, 839
Bbv12I GWGCWC 2 cut(s) 258, 540
BbvI GCAGC 3 cut(s) 133, 247, 692
BccI CCATC 9 cut(s) 589, 763, 812, 1041, 1108, 1273, 1346, 1371, 1424
BcgI CGANNNNNNTGC 4 cut(s) 242, 276, 1354, 1388
BciT130I CCWGG 5 cut(s) 193, 798, 1055, 1120, 1248
BcnI CCSGG 1 cut(s) 1317
BcoDI GTCTC 4 cut(s) 294, 367, 383, 928
BfaI CTAG 1 cut(s) 444
BfmI CTRYAG 1 cut(s) 954
BglII AGATCT 1 cut(s) 778
BisI GCNGC 5 cut(s) 75, 78, 147, 261, 681
BlsI GCNGC 5 cut(s) 76, 79, 148, 262, 682
Bme1390I CCNGG 6 cut(s) 193, 798, 1055, 1120, 1248, 1317
Bme18I GGWCC 1 cut(s) 1447
BmeT110I CYCGRG 1 cut(s) 289
BmgT120I GGNCC 5 cut(s) 79, 596, 835, 836, 1447
BmiI GGNNCC 6 cut(s) 411, 510, 795, 836, 837, 1117
BmrFI CCNGG 6 cut(s) 193, 798, 1055, 1120, 1248, 1317
BmrI ACTGGG 2 cut(s) 145, 208
BmsI GCATC 3 cut(s) 252, 667, 1365
BmuI ACTGGG 2 cut(s) 145, 208
BoxI GACNNNNGTC 1 cut(s) 1477
BpmI CTGGAG 2 cut(s) 259, 612
BpuEI CTTGAG 1 cut(s) 1424
BpuMI CCSGG 1 cut(s) 1317
BsaI GGTCTC 2 cut(s) 367, 383
BsaJI CCNNGG 4 cut(s) 72, 134, 290, 1247
BsaXI ACNNNNNCTCC 1 cut(s) 30
Bsc4I CCNNNNNNNGG 7 cut(s) 46, 139, 198, 737, 1060, 1154, 1408
Bse1I ACTGG 4 cut(s) 151, 167, 203, 1256
Bse3DI GCAATG 1 cut(s) 973
BseBI CCWGG 5 cut(s) 193, 798, 1055, 1120, 1248
BseDI CCNNGG 4 cut(s) 72, 134, 290, 1247
BseGI GGATG 5 cut(s) 580, 823, 1356, 1357, 1382
BseLI CCNNNNNNNGG 7 cut(s) 46, 139, 198, 737, 1060, 1154, 1408
BseMI GCAATG 1 cut(s) 973
BseMII CTCAG 2 cut(s) 419, 1094
BseNI ACTGG 4 cut(s) 151, 167, 203, 1256
BseRI GAGGAG 3 cut(s) 307, 334, 1175
BseSI GKGCMC 1 cut(s) 839
BseXI GCAGC 3 cut(s) 133, 247, 692
Bsh1236I CGCG 1 cut(s) 74
BshFI GGCC 3 cut(s) 80, 598, 837
BsiHKAI GWGCWC 2 cut(s) 258, 540
BsiHKCI CYCGRG 1 cut(s) 289
BsiSI CCGG 1 cut(s) 1316
BslI CCNNNNNNNGG 7 cut(s) 46, 139, 198, 737, 1060, 1154, 1408
BsmAI GTCTC 4 cut(s) 294, 367, 383, 928
BsnI GGCC 3 cut(s) 80, 598, 837
Bso31I GGTCTC 2 cut(s) 367, 383
BsoBI CYCGRG 1 cut(s) 289
Bsp120I GGGCCC 1 cut(s) 835
Bsp1286I GDGCHC 3 cut(s) 258, 540, 839
Bsp143I GATC 6 cut(s) 778, 821, 1115, 1395, 1451, 1483
BspACI CCGC 7 cut(s) 19, 72, 74, 77, 110, 345, 1487
BspANI GGCC 3 cut(s) 80, 598, 837
BspCNI CTCAG 2 cut(s) 418, 1093
BspFNI CGCG 1 cut(s) 74
BspHI TCATGA 1 cut(s) 1039
BspLI GGNNCC 6 cut(s) 411, 510, 795, 836, 837, 1117
BspPI GGATC 5 cut(s) 829, 1110, 1123, 1403, 1478
BspTNI GGTCTC 2 cut(s) 367, 383
BsrDI GCAATG 1 cut(s) 973
BsrI ACTGG 4 cut(s) 151, 167, 203, 1256
BssECI CCNNGG 4 cut(s) 72, 134, 290, 1247
BssMI GATC 6 cut(s) 778, 821, 1115, 1395, 1451, 1483
Bst2UI CCWGG 5 cut(s) 193, 798, 1055, 1120, 1248
Bst4CI ACNGT 7 cut(s) 12, 341, 394, 559, 909, 1017, 1476
Bst6I CTCTTC 5 cut(s) 73, 95, 292, 320, 1269
BstAPI GCANNNNNTGC 1 cut(s) 1362
BstC8I GCNNGC 3 cut(s) 206, 258, 1244
BstDEI CTNAG 2 cut(s) 405, 1080
BstDSI CCRYGG 1 cut(s) 72
BstF5I GGATG 5 cut(s) 580, 823, 1356, 1357, 1382
BstFNI CGCG 1 cut(s) 74
BstHHI GCGC 1 cut(s) 1086
BstKTI GATC 6 cut(s) 781, 824, 1118, 1398, 1454, 1486
BstMAI GTCTC 4 cut(s) 294, 367, 383, 928
BstMBI GATC 6 cut(s) 778, 821, 1115, 1395, 1451, 1483
BstMWI GCNNNNNNNGC 1 cut(s) 1362
BstNI CCWGG 5 cut(s) 193, 798, 1055, 1120, 1248
BstNSI RCATGY 1 cut(s) 1291
BstPAI GACNNNNGTC 1 cut(s) 1477
BstSCI CCNGG 6 cut(s) 191, 796, 1053, 1118, 1246, 1315
BstSFI CTRYAG 1 cut(s) 954
BstSLI GKGCMC 1 cut(s) 839
BstUI CGCG 1 cut(s) 74
BstV1I GCAGC 3 cut(s) 133, 247, 692
BstX2I RGATCY 3 cut(s) 778, 821, 1115
BstYI RGATCY 3 cut(s) 778, 821, 1115
BsuRI GGCC 3 cut(s) 80, 598, 837
BtgI CCRYGG 1 cut(s) 72
BtgZI GCGATG 1 cut(s) 348
BtsCI GGATG 5 cut(s) 580, 823, 1356, 1357, 1382
BtsI GCAGTG 2 cut(s) 495, 1326
BtsIMutI CAGTG 7 cut(s) 158, 460, 495, 914, 1022, 1144, 1326
Cac8I GCNNGC 3 cut(s) 206, 258, 1244
CaiI CAGNNNCTG 1 cut(s) 198
CciI TCATGA 1 cut(s) 1039
CfoI GCGC 1 cut(s) 1086
Cfr13I GGNCC 5 cut(s) 79, 596, 835, 836, 1447
Cfr42I CCGCGG 1 cut(s) 75
CsiI ACCWGGT 1 cut(s) 796
Csp6I GTAC 2 cut(s) 170, 1381
CviAII CATG 3 cut(s) 784, 1040, 1288
CviQI GTAC 2 cut(s) 170, 1381
DdeI CTNAG 2 cut(s) 405, 1080
DpnI GATC 6 cut(s) 780, 823, 1117, 1397, 1453, 1485
DpnII GATC 6 cut(s) 778, 821, 1115, 1395, 1451, 1483
Eam1104I CTCTTC 5 cut(s) 73, 95, 292, 320, 1269
EarI CTCTTC 5 cut(s) 73, 95, 292, 320, 1269
EciI GGCGGA 1 cut(s) 8
Ecl136II GAGCTC 1 cut(s) 256
Eco24I GRGCYC 2 cut(s) 258, 839
Eco31I GGTCTC 2 cut(s) 367, 383
Eco32I GATATC 1 cut(s) 847
Eco47I GGWCC 1 cut(s) 1447
Eco53kI GAGCTC 1 cut(s) 256
Eco88I CYCGRG 1 cut(s) 289
EcoICRI GAGCTC 1 cut(s) 256
EcoO109I RGGNCCY 2 cut(s) 835, 836
EcoRI GAATTC 1 cut(s) 959
EcoRII CCWGG 5 cut(s) 191, 796, 1053, 1118, 1246
EcoRV GATATC 1 cut(s) 847
EcoT38I GRGCYC 2 cut(s) 258, 839
FaeI CATG 3 cut(s) 787, 1043, 1291
FalI AAGNNNNNCTT 2 cut(s) 1226, 1258
FatI CATG 3 cut(s) 783, 1039, 1287
FauI CCCGC 2 cut(s) 117, 338
FauNDI CATATG 1 cut(s) 1204
FblI GTMKAC 1 cut(s) 1284
Fnu4HI GCNGC 5 cut(s) 75, 78, 147, 261, 681
FokI GGATG 5 cut(s) 587, 830, 1343, 1364, 1389
FriOI GRGCYC 2 cut(s) 258, 839
Fsp4HI GCNGC 5 cut(s) 75, 78, 147, 261, 681
FspBI CTAG 1 cut(s) 444
GlaI GCGC 1 cut(s) 1085
GluI GCNGC 5 cut(s) 75, 78, 147, 261, 681
GsuI CTGGAG 2 cut(s) 259, 612
HaeIII GGCC 3 cut(s) 80, 598, 837
HapII CCGG 1 cut(s) 1316
HhaI GCGC 1 cut(s) 1086
Hin1II CATG 3 cut(s) 787, 1043, 1291
Hin6I GCGC 1 cut(s) 1084
HinP1I GCGC 1 cut(s) 1084
HindIII AAGCTT 1 cut(s) 1240
HinfI GANTC 4 cut(s) 634, 869, 1252, 1371
HpaII CCGG 1 cut(s) 1316
HphI GGTGA 8 cut(s) 29, 85, 480, 643, 662, 869, 879, 1169
Hpy166II GTNNAC 3 cut(s) 27, 1261, 1285
Hpy188I TCNGA 9 cut(s) 138, 229, 524, 1105, 1376, 1387, 1451, 1462, 1483
Hpy188III TCNNGA 6 cut(s) 238, 388, 407, 591, 613, 1040
Hpy8I GTNNAC 3 cut(s) 27, 1261, 1285
Hpy99I CGWCG 1 cut(s) 16
HpyAV CCTTC 7 cut(s) 115, 133, 211, 259, 460, 1117, 1385
HpyCH4III ACNGT 7 cut(s) 12, 341, 394, 559, 909, 1017, 1476
HpyCH4V TGCA 4 cut(s) 680, 1218, 1291, 1365
HpyF10VI GCNNNNNNNGC 1 cut(s) 1362
HpyF3I CTNAG 2 cut(s) 405, 1080
Hsp92II CATG 3 cut(s) 787, 1043, 1291
HspAI GCGC 1 cut(s) 1084
KspI CCGCGG 1 cut(s) 75
Kzo9I GATC 6 cut(s) 778, 821, 1115, 1395, 1451, 1483
LmnI GCTCC 3 cut(s) 21, 240, 476
Lsp1109I GCAGC 3 cut(s) 133, 247, 692
LweI GCATC 3 cut(s) 252, 667, 1365
MabI ACCWGGT 1 cut(s) 796
MaeI CTAG 1 cut(s) 444
MaeIII GTNAC 4 cut(s) 631, 1049, 1297, 1324
MalI GATC 6 cut(s) 780, 823, 1117, 1397, 1453, 1485
MboI GATC 6 cut(s) 778, 821, 1115, 1395, 1451, 1483
MflI RGATCY 3 cut(s) 778, 821, 1115
MhlI GDGCHC 3 cut(s) 258, 540, 839
MluCI AATT 5 cut(s) 625, 694, 734, 899, 959
MlyI GAGTC 2 cut(s) 628, 1380
MmeI TCCRAC 6 cut(s) 207, 454, 502, 652, 1041, 1354
MseI TTAA 4 cut(s) 377, 624, 747, 918
MslI CAYNNNNRTG 2 cut(s) 543, 1038
MspA1I CMGCKG 1 cut(s) 74
MspI CCGG 1 cut(s) 1316
MspR9I CCNGG 6 cut(s) 193, 798, 1055, 1120, 1248, 1317
MvaI CCWGG 5 cut(s) 193, 798, 1055, 1120, 1248
MvnI CGCG 1 cut(s) 74
MwoI GCNNNNNNNGC 1 cut(s) 1362
NciI CCSGG 1 cut(s) 1317
NdeI CATATG 1 cut(s) 1204
NdeII GATC 6 cut(s) 778, 821, 1115, 1395, 1451, 1483
NlaIII CATG 3 cut(s) 787, 1043, 1291
NlaIV GGNNCC 6 cut(s) 411, 510, 795, 836, 837, 1117
NmuCI GTSAC 4 cut(s) 631, 1049, 1297, 1324
NspI RCATGY 1 cut(s) 1291
PagI TCATGA 1 cut(s) 1039
PfeI GAWTC 2 cut(s) 869, 1252
PflFI GACNNNGTC 1 cut(s) 233
PflMI CCANNNNNTGG 4 cut(s) 46, 198, 1060, 1154
PfoI TCCNGGA 1 cut(s) 1118
PkrI GCNGC 5 cut(s) 76, 79, 148, 262, 682
PleI GAGTC 2 cut(s) 628, 1379
PpsI GAGTC 2 cut(s) 628, 1379
PshAI GACNNNNGTC 1 cut(s) 1477
PshBI ATTAAT 1 cut(s) 624
Psp124BI GAGCTC 1 cut(s) 258
Psp6I CCWGG 5 cut(s) 191, 796, 1053, 1118, 1246
PspGI CCWGG 5 cut(s) 191, 796, 1053, 1118, 1246
PspN4I GGNNCC 6 cut(s) 411, 510, 795, 836, 837, 1117
PspOMI GGGCCC 1 cut(s) 835
PspPI GGNCC 5 cut(s) 79, 596, 835, 836, 1447
PstNI CAGNNNCTG 1 cut(s) 198
PsuI RGATCY 3 cut(s) 778, 821, 1115
PsyI GACNNNGTC 1 cut(s) 233
RsaI GTAC 2 cut(s) 171, 1382
RsaNI GTAC 2 cut(s) 170, 1381
RseI CAYNNNNRTG 2 cut(s) 543, 1038
SacI GAGCTC 1 cut(s) 258
SacII CCGCGG 1 cut(s) 75
SaqAI TTAA 4 cut(s) 377, 624, 747, 918
SatI GCNGC 5 cut(s) 75, 78, 147, 261, 681
Sau3AI GATC 6 cut(s) 778, 821, 1115, 1395, 1451, 1483
Sau96I GGNCC 5 cut(s) 79, 596, 835, 836, 1447
SchI GAGTC 2 cut(s) 628, 1380
ScrFI CCNGG 6 cut(s) 193, 798, 1055, 1120, 1248, 1317
SduI GDGCHC 3 cut(s) 258, 540, 839
SexAI ACCWGGT 1 cut(s) 796
SfaNI GCATC 3 cut(s) 252, 667, 1365
SfcI CTRYAG 1 cut(s) 954
Sfr303I CCGCGG 1 cut(s) 75
SgrBI CCGCGG 1 cut(s) 75
SinI GGWCC 1 cut(s) 1447
SmiMI CAYNNNNRTG 2 cut(s) 543, 1038
SmlI CTYRAG 1 cut(s) 1439
SmoI CTYRAG 1 cut(s) 1439
Sse9I AATT 5 cut(s) 625, 694, 734, 899, 959
SsiI CCGC 7 cut(s) 19, 72, 74, 77, 110, 345, 1487
SspI AATATT 2 cut(s) 878, 1152
SspMI CTAG 1 cut(s) 444
SstI GAGCTC 1 cut(s) 258
StyD4I CCNGG 6 cut(s) 191, 796, 1053, 1118, 1246, 1315
TaaI ACNGT 7 cut(s) 12, 341, 394, 559, 909, 1017, 1476
TaqI TCGA 2 cut(s) 246, 387
TasI AATT 5 cut(s) 625, 694, 734, 899, 959
TauI GCSGC 2 cut(s) 77, 80
TfiI GAWTC 2 cut(s) 869, 1252
Tru1I TTAA 4 cut(s) 377, 624, 747, 918
Tru9I TTAA 4 cut(s) 377, 624, 747, 918
TscAI CASTG 7 cut(s) 158, 460, 502, 914, 1022, 1144, 1333
TseFI GTSAC 4 cut(s) 631, 1049, 1297, 1324
TseI GCWGC 3 cut(s) 146, 260, 680
Tsp45I GTSAC 4 cut(s) 631, 1049, 1297, 1324
TspDTI ATGAA 5 cut(s) 576, 938, 1023, 1028, 1404
TspRI CASTG 7 cut(s) 158, 460, 502, 914, 1022, 1144, 1333
Tth111I GACNNNGTC 1 cut(s) 233
Van91I CCANNNNNTGG 4 cut(s) 46, 198, 1060, 1154
VpaK11BI GGWCC 1 cut(s) 1447
VspI ATTAAT 1 cut(s) 624
XapI RAATTY 2 cut(s) 899, 959
XceI RCATGY 1 cut(s) 1291
XmiI GTMKAC 1 cut(s) 1284
XspI CTAG 1 cut(s) 444
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.