FvH4_7g10380

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0015197
Physical Location & Seq
Reverse (-)
9829825 .. 9833280
3456 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g10380.t1

Sequence Viewer

Length: 1437 bp
ATGTCCTCACCGTCCCTCCGCGTCTCCACCACCGCCCACCGCCACCTGGGCTTCAACCACTCACTCTCCCCCTCCCAAAACCTCCTCACCTCACTCTCCTTCCCCACTTCCTCTTTCCCAAAACACCCTCGCAACCTCGCCGCCCAGTGCCAAAAGAAGCAAGGCAAAGCCAAGGAGGGTGGGTCGATCAAGGTCAAGGGCAAGCCGGGTAATGTGTGGAGCGTGGACAACGAGCTCGCTGCTCAGGAGAAAGCGAAGCCCACAAGGAGAAGAGGGAAGAGGACAGTTGTGAAGGGGAAGAGAAGCAGAGATGGTGGTGGCAGAGGTGTGTTGGTCTCTGGTGCTATGTTAATGGAGGTTGAGACTGTTCTTCAAACTCAGGAACCTGTGATAAGACCCTCATGGAATACATTTTCTAGTAGTATCAGTGGGATATGGAAGGGTGTTGGAGCAGTTTTTTCACCCATCACTGCAGAAATGGAGCCAATTGATTTTGGAAGCAGGGATGAACAACTTTATGATTGCTATACTCTTTCTCGCATTGAGGCTGTGCCATCTTCTTCTGGAGGGCCAGCATCTCATATCCAAAGGAATATTAATTGGGTGACTTTAAATCCTTATGGTGAGAAAAACAATACTAATCAAACCGGAAGAAATCATGTGTTGCCTCAATATGAGGACTTTAACTTTGACAGAAGTGACGTGATGGAAGAAGATGTCATGGGCAAAGAACCTGGTCTTGTTTTCTTCGAGGATGGATCTTATTCTAGGGGTCCTGTCGATATCCCAGTTGGTGAAGATGATGACTCTAACTATTACCTTTCACCAACTTTCAAATTTGAACAGTGCTTGGTTAAAGGTTGCCACAAGAGACTTCGAATTGTGCATACCATAGAGTTCAGCAATGGTGGTTCAAACATTCAGATAATGAGAGTTGCTGTGTATGAGGAACAGTGGGTTAGCCCTGTCAATCTTCTGGACCAAGGTGATTCGGAGCTTGATTTGAAACCATTTTCTCAGCGGAAACGAACTCAGTCATCAGAGCTGGCTGGGTCATGGAAGGTGTTTGAGGTTAGTGCTACGCCAATATATGGTGAGGAGATGGACGAGACGGTGTTGGAGCAAGAGAATACTGTTCCTTATGTCTACCTTTGCACAGAAGCTCTAAAGAATAGGAGCTTGCCTGGGAATGCAGCTCACTTTGGTGAGGAAGAGATGCTAGACATGCAAGATGCGACTATGCTTTGGCTTCCAGGCGGTGTCACTGCATATGTTGATGTAAATAAAGATGGCATCCTTTGTATTGGAGTTGGGTGGTACTCAGATGAAGGGATCAACCTTGTTATGGAGAGGGATTATGGTGTAGATGGGAAACTCAAGGACATTCGATCGAAGTCAGAGGTCAAAAGAAGGTGGCCGGATCCCCTGCCTGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

479

Amino Acids

53.27

Weight (kDa)

5.65

Isoelectric Point (pI)

53.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015197)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G44760
fragaria_vesca FvH4_7g10380
malus_domestica MD07G1109900.v1.1
prunus_persica Prupe.2G133500_v2.0.a1
pyrus_communis pycom07g09470
rosa_chinensis RchiOBHm_Chr1g0348081
rosa_laevigata RLG00000028692
rosa_multiflora Rmu_sc0000253.1_g000019 Rmu_sc0002523.1_g000001
rosa_roxburghii Rroxscaffold_4G00307250
rosa_rugosa Rorug01G0192200
rosa_samantha Rh1AG209900 Rh1BG175500 Rh1CG194300 Rh1DG205300
rosa_wichuraiana Rw1G017510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 1091
AccI GTMKAC 1 cut(s) 1146
AccII CGCG 1 cut(s) 21
AciI CCGC 6 cut(s) 19, 33, 40, 141, 1021, 1257
AclWI GGATC 4 cut(s) 766, 1340, 1415, 1428
AcoI YGGCCR 1 cut(s) 1415
AcsI RAATTY 1 cut(s) 836
AfaI GTAC 1 cut(s) 1319
AfiI CCNNNNNNNGG 3 cut(s) 46, 1091, 1345
AgsI TTSAA 6 cut(s) 55, 374, 835, 842, 915, 1006
AjiI CACGTC 1 cut(s) 703
AjnI CCWGG 4 cut(s) 45, 733, 1183, 1252
AleI CACNNNNGTG 1 cut(s) 1203
AluBI AGCT 6 cut(s) 235, 997, 1045, 1163, 1179, 1196
AluI AGCT 6 cut(s) 235, 997, 1045, 1163, 1179, 1196
Alw21I GWGCWC 1 cut(s) 237
Alw26I GTCTC 5 cut(s) 28, 340, 356, 865, 1103
AlwI GGATC 4 cut(s) 766, 1340, 1415, 1428
AoxI GGCC 2 cut(s) 569, 1415
ApeKI GCWGC 2 cut(s) 239, 1193
ApoI RAATTY 1 cut(s) 836
ArsI GACNNNNNNTTYG 2 cut(s) 671, 703
AseI ATTAAT 1 cut(s) 597
AspS9I GGNCC 3 cut(s) 569, 773, 979
AsuC2I CCSGG 1 cut(s) 207
AsuHPI GGTGA 9 cut(s) 79, 453, 616, 635, 806, 816, 998, 1106, 1217
AsuII TTCGAA 1 cut(s) 877
AvaII GGWCC 2 cut(s) 773, 979
BamHI GGATCC 1 cut(s) 1420
BanII GRGCYC 1 cut(s) 237
Bbv12I GWGCWC 1 cut(s) 237
BbvI GCAGC 2 cut(s) 226, 1205
BccI CCATC 8 cut(s) 305, 473, 562, 700, 749, 1096, 1283, 1361
BcgI CGANNNNNNTGC 2 cut(s) 221, 255
BciT130I CCWGG 4 cut(s) 47, 735, 1185, 1254
BcnI CCSGG 1 cut(s) 207
BcoDI GTCTC 5 cut(s) 28, 340, 356, 865, 1103
BfaI CTAG 3 cut(s) 417, 768, 1220
BfmI CTRYAG 1 cut(s) 471
BglI GCCNNNNNGGC 1 cut(s) 48
BisI GCNGC 3 cut(s) 141, 240, 1194
BlsI GCNGC 3 cut(s) 142, 241, 1195
Bme1390I CCNGG 5 cut(s) 47, 207, 735, 1185, 1254
Bme18I GGWCC 2 cut(s) 773, 979
BmgBI CACGTC 1 cut(s) 703
BmgT120I GGNCC 3 cut(s) 569, 773, 979
BmiI GGNNCC 4 cut(s) 384, 483, 774, 1422
BmrFI CCNGG 5 cut(s) 47, 207, 735, 1185, 1254
BmrI ACTGGG 2 cut(s) 139, 782
BmsI GCATC 4 cut(s) 584, 1206, 1222, 1302
BmuI ACTGGG 2 cut(s) 139, 782
BpmI CTGGAG 1 cut(s) 585
Bpu10I CCTNAGC 1 cut(s) 243
Bpu14I TTCGAA 1 cut(s) 877
BpuEI CTTGAG 1 cut(s) 1361
BpuMI CCSGG 1 cut(s) 207
BsaI GGTCTC 1 cut(s) 340
BsaJI CCNNGG 4 cut(s) 46, 171, 982, 1184
BsaWI WCCGGW 1 cut(s) 647
BsaXI ACNNNNNCTCC 5 cut(s) 30, 50, 80, 167, 197
Bsc4I CCNNNNNNNGG 3 cut(s) 46, 1091, 1345
Bse1I ACTGG 2 cut(s) 145, 788
Bse3DI GCAATG 1 cut(s) 910
BseBI CCWGG 4 cut(s) 47, 735, 1185, 1254
BseDI CCNNGG 4 cut(s) 46, 171, 982, 1184
BseGI GGATG 3 cut(s) 511, 760, 1293
BseLI CCNNNNNNNGG 3 cut(s) 46, 1091, 1345
BseMI GCAATG 1 cut(s) 910
BseMII CTCAG 6 cut(s) 257, 392, 1031, 1046, 1335, 1422
BseNI ACTGG 2 cut(s) 145, 788
BseRI GAGGAG 2 cut(s) 74, 1112
BseXI GCAGC 2 cut(s) 226, 1205
BseYI CCCAGC 1 cut(s) 1049
Bsh1236I CGCG 1 cut(s) 21
Bsh1285I CGRYCG 1 cut(s) 1391
BshFI GGCC 2 cut(s) 571, 1417
BsiEI CGRYCG 1 cut(s) 1391
BsiHKAI GWGCWC 1 cut(s) 237
BsiSI CCGG 3 cut(s) 206, 648, 1418
BslI CCNNNNNNNGG 3 cut(s) 46, 1091, 1345
BsmAI GTCTC 5 cut(s) 28, 340, 356, 865, 1103
BsmBI CGTCTC 2 cut(s) 28, 1103
BsmI GAATGC 1 cut(s) 1195
BsnI GGCC 2 cut(s) 571, 1417
Bso31I GGTCTC 1 cut(s) 340
Bsp119I TTCGAA 1 cut(s) 877
Bsp1286I GDGCHC 1 cut(s) 237
Bsp143I GATC 5 cut(s) 186, 758, 1332, 1388, 1420
BspACI CCGC 6 cut(s) 19, 33, 40, 141, 1021, 1257
BspANI GGCC 2 cut(s) 571, 1417
BspCNI CTCAG 6 cut(s) 256, 391, 1030, 1045, 1334, 1423
BspFNI CGCG 1 cut(s) 21
BspLI GGNNCC 4 cut(s) 384, 483, 774, 1422
BspMAI CTGCAG 1 cut(s) 475
BspPI GGATC 4 cut(s) 766, 1340, 1415, 1428
BspT104I TTCGAA 1 cut(s) 877
BspTNI GGTCTC 1 cut(s) 340
BsrDI GCAATG 1 cut(s) 910
BsrI ACTGG 2 cut(s) 145, 788
BssECI CCNNGG 4 cut(s) 46, 171, 982, 1184
BssMI GATC 5 cut(s) 186, 758, 1332, 1388, 1420
BssT1I CCWWGG 2 cut(s) 171, 982
Bst2UI CCWGG 4 cut(s) 47, 735, 1185, 1254
Bst4CI ACNGT 7 cut(s) 12, 286, 367, 846, 954, 1114, 1135
Bst6I CTCTTC 4 cut(s) 265, 272, 293, 1206
BstBI TTCGAA 1 cut(s) 877
BstC8I GCNNGC 5 cut(s) 203, 237, 573, 1047, 1181
BstDEI CTNAG 6 cut(s) 243, 378, 1017, 1032, 1321, 1431
BstF5I GGATG 3 cut(s) 511, 760, 1293
BstFNI CGCG 1 cut(s) 21
BstKTI GATC 5 cut(s) 189, 761, 1335, 1391, 1423
BstMAI GTCTC 5 cut(s) 28, 340, 356, 865, 1103
BstMBI GATC 5 cut(s) 186, 758, 1332, 1388, 1420
BstMCI CGRYCG 1 cut(s) 1391
BstMWI GCNNNNNNNGC 2 cut(s) 48, 1225
BstNI CCWGG 4 cut(s) 47, 735, 1185, 1254
BstNSI RCATGY 1 cut(s) 1228
BstSCI CCNGG 5 cut(s) 45, 205, 733, 1183, 1252
BstSFI CTRYAG 1 cut(s) 471
BstUI CGCG 1 cut(s) 21
BstV1I GCAGC 2 cut(s) 226, 1205
BstX2I RGATCY 2 cut(s) 758, 1420
BstYI RGATCY 2 cut(s) 758, 1420
BsuRI GGCC 2 cut(s) 571, 1417
BtrI CACGTC 1 cut(s) 703
BtsCI GGATG 3 cut(s) 511, 760, 1293
BtsI GCAGTG 2 cut(s) 468, 1263
BtsIMutI CAGTG 6 cut(s) 152, 433, 468, 851, 959, 1263
Cac8I GCNNGC 5 cut(s) 203, 237, 573, 1047, 1181
Cfr13I GGNCC 3 cut(s) 569, 773, 979
CseI GACGC 1 cut(s) 10
CsiI ACCWGGT 1 cut(s) 733
Csp6I GTAC 1 cut(s) 1318
CspCI CAANNNNNGTGG 2 cut(s) 160, 195
CviAII CATG 5 cut(s) 402, 659, 721, 1056, 1225
CviQI GTAC 1 cut(s) 1318
DdeI CTNAG 6 cut(s) 243, 378, 1017, 1032, 1321, 1431
DpnI GATC 5 cut(s) 188, 760, 1334, 1390, 1422
DpnII GATC 5 cut(s) 186, 758, 1332, 1388, 1420
DraI TTTAAA 1 cut(s) 612
EaeI YGGCCR 1 cut(s) 1415
Eam1104I CTCTTC 4 cut(s) 265, 272, 293, 1206
EarI CTCTTC 4 cut(s) 265, 272, 293, 1206
Ecl136II GAGCTC 1 cut(s) 235
Eco130I CCWWGG 2 cut(s) 171, 982
Eco24I GRGCYC 1 cut(s) 237
Eco31I GGTCTC 1 cut(s) 340
Eco32I GATATC 1 cut(s) 784
Eco47I GGWCC 2 cut(s) 773, 979
Eco53kI GAGCTC 1 cut(s) 235
EcoICRI GAGCTC 1 cut(s) 235
EcoO109I RGGNCCY 1 cut(s) 773
EcoRII CCWGG 4 cut(s) 45, 733, 1183, 1252
EcoRV GATATC 1 cut(s) 784
EcoT14I CCWWGG 2 cut(s) 171, 982
EcoT38I GRGCYC 1 cut(s) 237
ErhI CCWWGG 2 cut(s) 171, 982
Esp3I CGTCTC 2 cut(s) 28, 1103
FaeI CATG 5 cut(s) 405, 662, 724, 1059, 1228
FatI CATG 5 cut(s) 401, 658, 720, 1055, 1224
FauNDI CATATG 1 cut(s) 1270
FblI GTMKAC 1 cut(s) 1146
Fnu4HI GCNGC 3 cut(s) 141, 240, 1194
FokI GGATG 3 cut(s) 518, 767, 1280
FriOI GRGCYC 1 cut(s) 237
Fsp4HI GCNGC 3 cut(s) 141, 240, 1194
FspBI CTAG 3 cut(s) 417, 768, 1220
GluI GCNGC 3 cut(s) 141, 240, 1194
GsaI CCCAGC 1 cut(s) 1053
GsuI CTGGAG 1 cut(s) 585
HaeIII GGCC 2 cut(s) 571, 1417
HapII CCGG 3 cut(s) 206, 648, 1418
HgaI GACGC 1 cut(s) 10
Hin1II CATG 5 cut(s) 405, 662, 724, 1059, 1228
HinfI GANTC 2 cut(s) 806, 989
HpaII CCGG 3 cut(s) 206, 648, 1418
HphI GGTGA 9 cut(s) 79, 453, 616, 635, 806, 816, 998, 1106, 1217
Hpy166II GTNNAC 2 cut(s) 226, 1147
Hpy188I TCNGA 5 cut(s) 924, 994, 1042, 1324, 1399
Hpy188III TCNNGA 4 cut(s) 245, 380, 564, 977
Hpy8I GTNNAC 2 cut(s) 226, 1147
HpyAV CCTTC 6 cut(s) 109, 286, 433, 1054, 1322, 1404
HpyCH4III ACNGT 7 cut(s) 12, 286, 367, 846, 954, 1114, 1135
HpyCH4IV ACGT 1 cut(s) 702
HpyCH4V TGCA 6 cut(s) 473, 886, 1155, 1193, 1228, 1268
HpyF10VI GCNNNNNNNGC 2 cut(s) 48, 1225
HpyF3I CTNAG 6 cut(s) 243, 378, 1017, 1032, 1321, 1431
HpySE526I ACGT 1 cut(s) 702
Hsp92II CATG 5 cut(s) 405, 662, 724, 1059, 1228
Kzo9I GATC 5 cut(s) 186, 758, 1332, 1388, 1420
LmnI GCTCC 6 cut(s) 219, 449, 481, 994, 1120, 1176
Lsp1109I GCAGC 2 cut(s) 226, 1205
LweI GCATC 4 cut(s) 584, 1206, 1222, 1302
MabI ACCWGGT 1 cut(s) 733
MaeI CTAG 3 cut(s) 417, 768, 1220
MaeII ACGT 1 cut(s) 702
MaeIII GTNAC 3 cut(s) 604, 698, 1261
MalI GATC 5 cut(s) 188, 760, 1334, 1390, 1422
MboI GATC 5 cut(s) 186, 758, 1332, 1388, 1420
MfeI CAATTG 1 cut(s) 486
MflI RGATCY 2 cut(s) 758, 1420
MhlI GDGCHC 1 cut(s) 237
MluCI AATT 4 cut(s) 486, 598, 836, 879
MlyI GAGTC 1 cut(s) 800
MmeI TCCRAC 2 cut(s) 427, 1098
MseI TTAA 5 cut(s) 350, 597, 611, 684, 855
MslI CAYNNNNRTG 1 cut(s) 1203
MspA1I CMGCKG 1 cut(s) 1021
MspI CCGG 3 cut(s) 206, 648, 1418
MspR9I CCNGG 5 cut(s) 47, 207, 735, 1185, 1254
MunI CAATTG 1 cut(s) 486
Mva1269I GAATGC 1 cut(s) 1195
MvaI CCWGG 4 cut(s) 47, 735, 1185, 1254
MvnI CGCG 1 cut(s) 21
MwoI GCNNNNNNNGC 2 cut(s) 48, 1225
NciI CCSGG 1 cut(s) 207
NdeI CATATG 1 cut(s) 1270
NdeII GATC 5 cut(s) 186, 758, 1332, 1388, 1420
NlaIII CATG 5 cut(s) 405, 662, 724, 1059, 1228
NlaIV GGNNCC 4 cut(s) 384, 483, 774, 1422
NmuCI GTSAC 3 cut(s) 604, 698, 1261
NspI RCATGY 1 cut(s) 1228
NspV TTCGAA 1 cut(s) 877
OliI CACNNNNGTG 1 cut(s) 1203
PctI GAATGC 1 cut(s) 1195
PfeI GAWTC 1 cut(s) 989
PflMI CCANNNNNTGG 1 cut(s) 1091
PkrI GCNGC 3 cut(s) 142, 241, 1195
Ple19I CGATCG 1 cut(s) 1391
PleI GAGTC 1 cut(s) 800
PpsI GAGTC 1 cut(s) 800
PpuMI RGGWCCY 1 cut(s) 773
PshBI ATTAAT 1 cut(s) 597
Psp124BI GAGCTC 1 cut(s) 237
Psp5II RGGWCCY 1 cut(s) 773
Psp6I CCWGG 4 cut(s) 45, 733, 1183, 1252
PspFI CCCAGC 1 cut(s) 1049
PspGI CCWGG 4 cut(s) 45, 733, 1183, 1252
PspN4I GGNNCC 4 cut(s) 384, 483, 774, 1422
PspPI GGNCC 3 cut(s) 569, 773, 979
PspPPI RGGWCCY 1 cut(s) 773
PstI CTGCAG 1 cut(s) 475
PsuI RGATCY 2 cut(s) 758, 1420
PvuI CGATCG 1 cut(s) 1391
RsaI GTAC 1 cut(s) 1319
RsaNI GTAC 1 cut(s) 1318
RseI CAYNNNNRTG 1 cut(s) 1203
SacI GAGCTC 1 cut(s) 237
SaqAI TTAA 5 cut(s) 350, 597, 611, 684, 855
SatI GCNGC 3 cut(s) 141, 240, 1194
Sau3AI GATC 5 cut(s) 186, 758, 1332, 1388, 1420
Sau96I GGNCC 3 cut(s) 569, 773, 979
SchI GAGTC 1 cut(s) 800
ScrFI CCNGG 5 cut(s) 47, 207, 735, 1185, 1254
SduI GDGCHC 1 cut(s) 237
SexAI ACCWGGT 1 cut(s) 733
SfaNI GCATC 4 cut(s) 584, 1206, 1222, 1302
SfcI CTRYAG 1 cut(s) 471
SfuI TTCGAA 1 cut(s) 877
SinI GGWCC 2 cut(s) 773, 979
SmiMI CAYNNNNRTG 1 cut(s) 1203
SmlI CTYRAG 1 cut(s) 1376
SmoI CTYRAG 1 cut(s) 1376
Sse9I AATT 4 cut(s) 486, 598, 836, 879
SsiI CCGC 6 cut(s) 19, 33, 40, 141, 1021, 1257
SspI AATATT 1 cut(s) 595
SspMI CTAG 3 cut(s) 417, 768, 1220
SstI GAGCTC 1 cut(s) 237
StyD4I CCNGG 5 cut(s) 45, 205, 733, 1183, 1252
StyI CCWWGG 2 cut(s) 171, 982
TaaI ACNGT 7 cut(s) 12, 286, 367, 846, 954, 1114, 1135
TaiI ACGT 1 cut(s) 705
TaqI TCGA 6 cut(s) 185, 750, 780, 877, 1387, 1391
TasI AATT 4 cut(s) 486, 598, 836, 879
TauI GCSGC 1 cut(s) 143
TfiI GAWTC 1 cut(s) 989
Tru1I TTAA 5 cut(s) 350, 597, 611, 684, 855
Tru9I TTAA 5 cut(s) 350, 597, 611, 684, 855
TscAI CASTG 6 cut(s) 152, 433, 475, 851, 959, 1270
TseFI GTSAC 3 cut(s) 604, 698, 1261
TseI GCWGC 2 cut(s) 239, 1193
Tsp45I GTSAC 3 cut(s) 604, 698, 1261
TspDTI ATGAA 2 cut(s) 522, 1341
TspRI CASTG 6 cut(s) 152, 433, 475, 851, 959, 1270
Van91I CCANNNNNTGG 1 cut(s) 1091
VpaK11BI GGWCC 2 cut(s) 773, 979
VspI ATTAAT 1 cut(s) 597
XapI RAATTY 1 cut(s) 836
XceI RCATGY 1 cut(s) 1228
XmiI GTMKAC 1 cut(s) 1146
XspI CTAG 3 cut(s) 417, 768, 1220
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.