AT2G45360

Protein of unknown function (DUF1442)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0015006
Physical Location & Seq
Forward (+)
18698592 .. 18699514
923 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G45360.1

Sequence Viewer

Length: 648 bp
ATGAAGCTTGTCTGGTCGCCGGAAACTGCTTCTGACGCCTACATCGACACCGTTAAATCGTGTAAGAGCGACAAAGAGTCAGGAGTGGCAGAATTTTTATCAGCTACAGCGGCTGGATGGAACGCGAGGCTGATCGTTGAGACATGGTCACGCGGCGATCCAATCACGACTAGCGTCGGACTCGCGGTTGCTGCAACTCACACGGGTGGAAGACACGTGTGTATAGTACCTGACGAGCAATCTAAACTTGAGTACGTGTTGGCCATGAGAGGATTTGTTACGACGGAGGTTGTGGTGGTCGGAGAATCTGTTGAGAACACGATGGAGGAGTTTCCCGGTGTGGATTTCTTGGTGGTGGACTCGAAGCGGCGAGAGTTCGTCAGAACGCTGAGGTTTGCGAAGCTGAGCAACAAGGGTGCCGTTTTGGTGTGTAAAAACGCCATGCATAGAGCAATCTCTGGTTTTAAATGGCACGATGTGTTGAAAAGAGGAACACGTGTGGTGAGATCCGTGTTTTTACCGGTTGGTAGTGGGTTGGATATTGTACACGTGGGAGCTACTGGTCGTGGGGACTCGAGGAATCTTCGTAGCCGTTGGATTAGACACGTGGATCATCTGTCGGGAGAGGAGCATTTGTTCAGACGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1442

Protein Analysis

215

Amino Acids

23.79

Weight (kDa)

9.27

Isoelectric Point (pI)

40.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1442 PF07279 1 - 215 2.6e-118 Protein of unknown function (DUF1442)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015006)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G45360 AT3G60780
fragaria_vesca FvH4_7g11620
malus_domestica MD07G1120900.v1.1
prunus_persica Prupe.2G144100_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0350051
rosa_laevigata RLG00000028503
rosa_multiflora Rmu_sc0003674.1_g000019
rosa_roxburghii Rroxscaffold_4G00305080
rosa_rugosa Rorug01G0208300
rosa_samantha Rh1AG224600 Rh1BG191900 Rh1CG209300 Rh1DG220400
rosa_wichuraiana Rw1G019190 Rw1G019310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 416
AccII CGCG 3 cut(s) 125, 153, 185
AciI CCGC 4 cut(s) 110, 153, 185, 367
AclWI GGATC 3 cut(s) 152, 501, 618
AcoI YGGCCR 1 cut(s) 261
AcsI RAATTY 1 cut(s) 92
AcvI CACGTG 4 cut(s) 217, 497, 550, 607
AcyI GRCGYC 1 cut(s) 36
AdeI CACNNNGTG 1 cut(s) 478
AfaI GTAC 3 cut(s) 228, 254, 546
AflIII ACRYGT 7 cut(s) 214, 216, 255, 494, 496, 547, 604
AgeI ACCGGT 1 cut(s) 520
AgsI TTSAA 1 cut(s) 484
AhdI GACNNNNNGTC 1 cut(s) 76
AleI CACNNNNGTG 1 cut(s) 204
AloI GAACNNNNNNTCC 1 cut(s) 620
AluBI AGCT 4 cut(s) 7, 104, 403, 557
AluI AGCT 4 cut(s) 7, 104, 403, 557
Alw26I GTCTC 1 cut(s) 134
AlwI GGATC 3 cut(s) 152, 501, 618
AlwNI CAGNNNCTG 1 cut(s) 113
Ama87I CYCGRG 1 cut(s) 574
AoxI GGCC 1 cut(s) 261
ApeKI GCWGC 1 cut(s) 191
ApoI RAATTY 1 cut(s) 92
AsiGI ACCGGT 1 cut(s) 520
AsuC2I CCSGG 1 cut(s) 336
AsuHPI GGTGA 1 cut(s) 514
AvaI CYCGRG 1 cut(s) 574
BalI TGGCCA 1 cut(s) 263
BanI GGYRCC 1 cut(s) 416
BbrPI CACGTG 4 cut(s) 217, 497, 550, 607
BbsI GAAGAC 1 cut(s) 217
BbvCI CCTCAGC 1 cut(s) 389
BbvI GCAGC 1 cut(s) 178
BccI CCATC 2 cut(s) 111, 316
BceAI ACGGC 2 cut(s) 404, 576
BcnI CCSGG 1 cut(s) 336
BcoDI GTCTC 1 cut(s) 134
BfaI CTAG 1 cut(s) 171
BfmI CTRYAG 1 cut(s) 105
BisI GCNGC 4 cut(s) 111, 154, 192, 368
BlpI GCTNAGC 1 cut(s) 404
BlsI GCNGC 4 cut(s) 112, 155, 193, 369
Bme1390I CCNGG 1 cut(s) 336
BmeRI GACNNNNNGTC 1 cut(s) 76
BmeT110I CYCGRG 1 cut(s) 574
BmiI GGNNCC 1 cut(s) 418
BmrFI CCNGG 1 cut(s) 336
BoxI GACNNNNGTC 1 cut(s) 173
BpiI GAAGAC 1 cut(s) 217
Bpu10I CCTNAGC 1 cut(s) 389
Bpu1102I GCTNAGC 1 cut(s) 404
BpuEI CTTGAG 1 cut(s) 269
BpuMI CCSGG 1 cut(s) 336
BsaAI YACGTR 5 cut(s) 217, 256, 497, 550, 607
BsaHI GRCGYC 1 cut(s) 36
BsaWI WCCGGW 1 cut(s) 520
BsaXI ACNNNNNCTCC 3 cut(s) 294, 324, 620
Bse118I RCCGGY 1 cut(s) 520
Bse1I ACTGG 1 cut(s) 565
BseGI GGATG 1 cut(s) 122
BseMII CTCAG 2 cut(s) 380, 395
BseNI ACTGG 1 cut(s) 565
BseRI GAGGAG 2 cut(s) 341, 641
BseXI GCAGC 1 cut(s) 178
Bsh1236I CGCG 3 cut(s) 125, 153, 185
BshFI GGCC 1 cut(s) 263
BshNI GGYRCC 1 cut(s) 416
BshTI ACCGGT 1 cut(s) 520
BsiHKCI CYCGRG 1 cut(s) 574
BsiSI CCGG 3 cut(s) 20, 336, 521
BslFI GGGAC 1 cut(s) 584
BsmAI GTCTC 1 cut(s) 134
BsmFI GGGAC 1 cut(s) 584
BsnI GGCC 1 cut(s) 263
BsoBI CYCGRG 1 cut(s) 574
Bsp1407I TGTACA 1 cut(s) 544
Bsp143I GATC 4 cut(s) 132, 157, 506, 610
Bsp1720I GCTNAGC 1 cut(s) 404
BspACI CCGC 4 cut(s) 110, 153, 185, 367
BspANI GGCC 1 cut(s) 263
BspCNI CTCAG 2 cut(s) 381, 396
BspFNI CGCG 3 cut(s) 125, 153, 185
BspLI GGNNCC 1 cut(s) 418
BspPI GGATC 3 cut(s) 152, 501, 618
BspT107I GGYRCC 1 cut(s) 416
BsrFI RCCGGY 1 cut(s) 520
BsrGI TGTACA 1 cut(s) 544
BsrI ACTGG 1 cut(s) 565
BssAI RCCGGY 1 cut(s) 520
BssMI GATC 4 cut(s) 132, 157, 506, 610
BssNI GRCGYC 1 cut(s) 36
Bst4CI ACNGT 1 cut(s) 52
BstACI GRCGYC 1 cut(s) 36
BstAUI TGTACA 1 cut(s) 544
BstBAI YACGTR 5 cut(s) 217, 256, 497, 550, 607
BstDEI CTNAG 2 cut(s) 389, 404
BstF5I GGATG 1 cut(s) 122
BstFNI CGCG 3 cut(s) 125, 153, 185
BstKTI GATC 4 cut(s) 135, 160, 509, 613
BstMAI GTCTC 1 cut(s) 134
BstMBI GATC 4 cut(s) 132, 157, 506, 610
BstMWI GCNNNNNNNGC 3 cut(s) 35, 110, 191
BstPAI GACNNNNGTC 1 cut(s) 173
BstSCI CCNGG 1 cut(s) 334
BstSFI CTRYAG 1 cut(s) 105
BstUI CGCG 3 cut(s) 125, 153, 185
BstV1I GCAGC 1 cut(s) 178
BstV2I GAAGAC 1 cut(s) 217
BstX2I RGATCY 1 cut(s) 506
BstYI RGATCY 1 cut(s) 506
BsuRI GGCC 1 cut(s) 263
BtsCI GGATG 1 cut(s) 122
CaiI CAGNNNCTG 1 cut(s) 113
Cfr10I RCCGGY 1 cut(s) 520
CseI GACGC 2 cut(s) 44, 163
Csp6I GTAC 3 cut(s) 227, 253, 545
CspAI ACCGGT 1 cut(s) 520
CviAII CATG 3 cut(s) 144, 265, 442
CviJI RGCY 8 cut(s) 7, 104, 113, 130, 263, 403, 557, 591
CviKI_1 RGCY 8 cut(s) 7, 104, 113, 130, 263, 403, 557, 591
CviQI GTAC 3 cut(s) 227, 253, 545
DdeI CTNAG 2 cut(s) 389, 404
DpnI GATC 4 cut(s) 134, 159, 508, 612
DpnII GATC 4 cut(s) 132, 157, 506, 610
DraI TTTAAA 1 cut(s) 466
DraIII CACNNNGTG 1 cut(s) 478
DriI GACNNNNNGTC 1 cut(s) 76
EaeI YGGCCR 1 cut(s) 261
Eam1105I GACNNNNNGTC 1 cut(s) 76
Eco72I CACGTG 4 cut(s) 217, 497, 550, 607
Eco88I CYCGRG 1 cut(s) 574
EcoT22I ATGCAT 1 cut(s) 447
FaeI CATG 3 cut(s) 147, 268, 445
FaiI YATR 5 cut(s) 145, 224, 266, 443, 447
FaqI GGGAC 1 cut(s) 584
FatI CATG 3 cut(s) 143, 264, 441
Fnu4HI GCNGC 4 cut(s) 111, 154, 192, 368
FokI GGATG 1 cut(s) 129
Fsp4HI GCNGC 4 cut(s) 111, 154, 192, 368
FspBI CTAG 1 cut(s) 171
GluI GCNGC 4 cut(s) 111, 154, 192, 368
HaeIII GGCC 1 cut(s) 263
HapII CCGG 3 cut(s) 20, 336, 521
HgaI GACGC 2 cut(s) 44, 163
Hin1I GRCGYC 1 cut(s) 36
Hin1II CATG 3 cut(s) 147, 268, 445
HindIII AAGCTT 1 cut(s) 5
HinfI GANTC 6 cut(s) 77, 180, 305, 359, 572, 580
HpaII CCGG 3 cut(s) 20, 336, 521
HphI GGTGA 1 cut(s) 514
Hpy166II GTNNAC 2 cut(s) 358, 547
Hpy188I TCNGA 5 cut(s) 34, 179, 302, 383, 641
Hpy188III TCNNGA 3 cut(s) 81, 166, 621
Hpy8I GTNNAC 2 cut(s) 358, 547
Hpy99I CGWCG 2 cut(s) 179, 286
HpyCH4III ACNGT 1 cut(s) 52
HpyCH4IV ACGT 5 cut(s) 216, 255, 496, 549, 606
HpyCH4V TGCA 2 cut(s) 194, 445
HpyF10VI GCNNNNNNNGC 3 cut(s) 35, 110, 191
HpyF3I CTNAG 2 cut(s) 389, 404
HpySE526I ACGT 5 cut(s) 216, 255, 496, 549, 606
Hsp92I GRCGYC 1 cut(s) 36
Hsp92II CATG 3 cut(s) 147, 268, 445
Kzo9I GATC 4 cut(s) 132, 157, 506, 610
LmnI GCTCC 2 cut(s) 554, 628
LpnPI CCDG 8 cut(s) 33, 66, 99, 243, 349, 444, 534, 546
Lsp1109I GCAGC 1 cut(s) 178
MaeI CTAG 1 cut(s) 171
MaeII ACGT 5 cut(s) 216, 255, 496, 549, 606
MaeIII GTNAC 2 cut(s) 147, 277
MalI GATC 4 cut(s) 134, 159, 508, 612
MboI GATC 4 cut(s) 132, 157, 506, 610
MboII GAAGA 2 cut(s) 222, 575
MflI RGATCY 1 cut(s) 506
MlsI TGGCCA 1 cut(s) 263
MluCI AATT 1 cut(s) 92
MluNI TGGCCA 1 cut(s) 263
MlyI GAGTC 4 cut(s) 86, 174, 353, 566
MmeI TCCRAC 4 cut(s) 157, 280, 516, 575
MnlI CCTC 8 cut(s) 120, 263, 280, 319, 384, 482, 570, 619
Mox20I TGGCCA 1 cut(s) 263
Mph1103I ATGCAT 1 cut(s) 447
MscI TGGCCA 1 cut(s) 263
MseI TTAA 2 cut(s) 54, 465
MslI CAYNNNNRTG 1 cut(s) 204
Msp20I TGGCCA 1 cut(s) 263
MspA1I CMGCKG 1 cut(s) 110
MspI CCGG 3 cut(s) 20, 336, 521
MspR9I CCNGG 1 cut(s) 336
MvnI CGCG 3 cut(s) 125, 153, 185
MwoI GCNNNNNNNGC 3 cut(s) 35, 110, 191
NciI CCSGG 1 cut(s) 336
NdeII GATC 4 cut(s) 132, 157, 506, 610
NlaIII CATG 3 cut(s) 147, 268, 445
NlaIV GGNNCC 1 cut(s) 418
NmuCI GTSAC 1 cut(s) 147
NsiI ATGCAT 1 cut(s) 447
OliI CACNNNNGTG 1 cut(s) 204
PaeR7I CTCGAG 1 cut(s) 574
PcsI WCGNNNNNNNCGW 1 cut(s) 42
PfeI GAWTC 2 cut(s) 305, 580
PflFI GACNNNGTC 1 cut(s) 145
PinAI ACCGGT 1 cut(s) 520
PkrI GCNGC 4 cut(s) 112, 155, 193, 369
PleI GAGTC 4 cut(s) 85, 174, 353, 566
PmaCI CACGTG 4 cut(s) 217, 497, 550, 607
PmlI CACGTG 4 cut(s) 217, 497, 550, 607
PpsI GAGTC 4 cut(s) 85, 174, 353, 566
Ppu21I YACGTR 5 cut(s) 217, 256, 497, 550, 607
PshAI GACNNNNGTC 1 cut(s) 173
PspCI CACGTG 4 cut(s) 217, 497, 550, 607
PspN4I GGNNCC 1 cut(s) 418
PspXI VCTCGAGB 1 cut(s) 574
PstNI CAGNNNCTG 1 cut(s) 113
PsuI RGATCY 1 cut(s) 506
PsyI GACNNNGTC 1 cut(s) 145
RsaI GTAC 3 cut(s) 228, 254, 546
RsaNI GTAC 3 cut(s) 227, 253, 545
RseI CAYNNNNRTG 1 cut(s) 204
SaqAI TTAA 2 cut(s) 54, 465
SatI GCNGC 4 cut(s) 111, 154, 192, 368
Sau3AI GATC 4 cut(s) 132, 157, 506, 610
SchI GAGTC 4 cut(s) 86, 174, 353, 566
ScrFI CCNGG 1 cut(s) 336
SfcI CTRYAG 1 cut(s) 105
Sfr274I CTCGAG 1 cut(s) 574
SlaI CTCGAG 1 cut(s) 574
SmiMI CAYNNNNRTG 1 cut(s) 204
SmlI CTYRAG 2 cut(s) 248, 574
SmoI CTYRAG 2 cut(s) 248, 574
Sse9I AATT 1 cut(s) 92
SsiI CCGC 4 cut(s) 110, 153, 185, 367
SspMI CTAG 1 cut(s) 171
StyD4I CCNGG 1 cut(s) 334
TaaI ACNGT 1 cut(s) 52
TaiI ACGT 5 cut(s) 219, 258, 499, 552, 609
TaqI TCGA 3 cut(s) 45, 362, 575
TasI AATT 1 cut(s) 92
TatI WGTACW 1 cut(s) 544
TauI GCSGC 3 cut(s) 113, 156, 370
TfiI GAWTC 2 cut(s) 305, 580
Tru1I TTAA 2 cut(s) 54, 465
Tru9I TTAA 2 cut(s) 54, 465
TseFI GTSAC 1 cut(s) 147
TseI GCWGC 1 cut(s) 191
Tsp45I GTSAC 1 cut(s) 147
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 2 cut(s) 299, 499
Tth111I GACNNNGTC 1 cut(s) 145
XapI RAATTY 1 cut(s) 92
XhoI CTCGAG 1 cut(s) 574
XspI CTAG 1 cut(s) 171
Zsp2I ATGCAT 1 cut(s) 447
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.