MD07G1120900.v1.1

Protein of unknown function (DUF1442)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
OG0015006
Physical Location & Seq
Forward (+)
15113540 .. 15115504
1965 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1120900.v1.1.491

Sequence Viewer

Length: 654 bp
ATGAAGCTCATTTGGTCTCCAGAAACTGCTTCAAAGGCTTACATAGACACTGTAAAATCATGTGAGAAGTTGAGACAATCTGGGGTTCCGGAGCTTCTGTCTGCCATGGCAGCCGGCTGGGATGCGAAGCTAATCGTGGAGTCGTGGTCCCAGGGTGATCCAATAGCCACGAGTATCGGCCTCGCCATGGCAGCCCGCCACACGCGCGGACGGCATGTGTGCATAGTCCCAGACGAAATTTCAAGATCGGAGTACGTAAATGCCACAAGAAACGCGGGGGTTATGCCAGAGGTGGTGGTCGGGGAGGCTGAGGCGGCAACAGGGGCAGGTGTGGATTTTCTGGTGGTGGATTGCAAGGGGAGGGACTTTTCTAGGGTTTTGATGAGGGCTAAGGTGAGTCCTAAAGGGGCAGTATTTGCATGCAAAAATGCGTGTCAAAGGAACGTTTCTGGGTTCAAATGGCATGGTGCGGTTGAGAAGGGGACACGAGTTGTGAGGACAGTGTTTTTGCCTGTTGGGAAGGGGTTGGATATTGCTCATATAGGCTATGGAGCTGGAGGTGGAAATGTTGTGGAGTCAAATAAGAAGGGTCCTAGCCGTTGGATCAAGCATATTGATCATCGATCAGGGGAGGAGCACTTGTTTTGGGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1442

Protein Analysis

218

Amino Acids

23.46

Weight (kDa)

9.13

Isoelectric Point (pI)

42.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1442 PF07279 1 - 215 3e-91 Protein of unknown function (DUF1442)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015006)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G45360 AT3G60780
fragaria_vesca FvH4_7g11620
malus_domestica MD07G1120900.v1.1
prunus_persica Prupe.2G144100_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0350051
rosa_laevigata RLG00000028503
rosa_multiflora Rmu_sc0003674.1_g000019
rosa_roxburghii Rroxscaffold_4G00305080
rosa_rugosa Rorug01G0208300
rosa_samantha Rh1AG224600 Rh1BG191900 Rh1CG209300 Rh1DG220400
rosa_wichuraiana Rw1G019190 Rw1G019310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 317
Acc36I ACCTGC 1 cut(s) 317
AccII CGCG 3 cut(s) 205, 207, 275
AccIII TCCGGA 1 cut(s) 88
AciI CCGC 5 cut(s) 196, 207, 275, 314, 470
AclI AACGTT 1 cut(s) 444
AclWI GGATC 2 cut(s) 152, 611
AcsI RAATTY 1 cut(s) 237
AfaI GTAC 1 cut(s) 254
AfiI CCNNNNNNNGG 1 cut(s) 187
AgsI TTSAA 3 cut(s) 33, 243, 457
AjnI CCWGG 1 cut(s) 150
AluBI AGCT 4 cut(s) 7, 94, 130, 554
AluI AGCT 4 cut(s) 7, 94, 130, 554
Alw21I GWGCWC 1 cut(s) 639
Alw26I GTCTC 2 cut(s) 21, 67
AlwI GGATC 2 cut(s) 152, 611
AlwNI CAGNNNCTG 1 cut(s) 26
Aor13HI TCCGGA 1 cut(s) 88
AoxI GGCC 1 cut(s) 178
ApeKI GCWGC 2 cut(s) 110, 191
ApoI RAATTY 1 cut(s) 237
ArsI GACNNNNNNTTYG 2 cut(s) 490, 522
AspLEI GCGC 1 cut(s) 207
AspS9I GGNCC 2 cut(s) 147, 590
AsuHPI GGTGA 2 cut(s) 167, 406
AvaII GGWCC 2 cut(s) 147, 590
BauI CACGAG 2 cut(s) 169, 486
Bbv12I GWGCWC 1 cut(s) 639
BbvCI CCTCAGC 1 cut(s) 309
BbvI GCAGC 2 cut(s) 122, 203
BceAI ACGGC 2 cut(s) 227, 582
BciT130I CCWGG 1 cut(s) 152
BclI TGATCA 1 cut(s) 616
BcoDI GTCTC 2 cut(s) 21, 67
BfaI CTAG 2 cut(s) 372, 594
BfuAI ACCTGC 1 cut(s) 317
BisI GCNGC 3 cut(s) 111, 192, 315
BlsI GCNGC 3 cut(s) 112, 193, 316
Bme1390I CCNGG 1 cut(s) 152
Bme18I GGWCC 2 cut(s) 147, 590
BmgT120I GGNCC 2 cut(s) 147, 590
BmiI GGNNCC 3 cut(s) 87, 149, 591
BmrFI CCNGG 1 cut(s) 152
BmsI GCATC 1 cut(s) 112
BpmI CTGGAG 1 cut(s) 576
Bpu10I CCTNAGC 2 cut(s) 309, 390
Bsa29I ATCGAT 1 cut(s) 622
BsaAI YACGTR 1 cut(s) 256
BsaI GGTCTC 1 cut(s) 21
BsaJI CCNNGG 4 cut(s) 105, 150, 151, 186
BsaWI WCCGGW 1 cut(s) 88
BsaXI ACNNNNNCTCC 5 cut(s) 83, 113, 131, 161, 626
Bsc4I CCNNNNNNNGG 1 cut(s) 187
Bse118I RCCGGY 1 cut(s) 113
BseAI TCCGGA 1 cut(s) 88
BseBI CCWGG 1 cut(s) 152
BseCI ATCGAT 1 cut(s) 622
BseDI CCNNGG 4 cut(s) 105, 150, 151, 186
BseGI GGATG 1 cut(s) 127
BseLI CCNNNNNNNGG 1 cut(s) 187
BseMII CTCAG 1 cut(s) 300
BseRI GAGGAG 1 cut(s) 647
BseXI GCAGC 2 cut(s) 122, 203
BseYI CCCAGC 1 cut(s) 117
Bsh1236I CGCG 3 cut(s) 205, 207, 275
BshFI GGCC 1 cut(s) 180
BshVI ATCGAT 1 cut(s) 622
BsiHKAI GWGCWC 1 cut(s) 639
BsiSI CCGG 2 cut(s) 89, 114
BslFI GGGAC 4 cut(s) 133, 212, 377, 496
BslI CCNNNNNNNGG 1 cut(s) 187
BsmAI GTCTC 2 cut(s) 21, 67
BsmFI GGGAC 4 cut(s) 133, 212, 377, 496
BsnI GGCC 1 cut(s) 180
Bso31I GGTCTC 1 cut(s) 21
Bsp1286I GDGCHC 1 cut(s) 639
Bsp13I TCCGGA 1 cut(s) 88
Bsp143I GATC 5 cut(s) 157, 245, 603, 616, 623
Bsp19I CCATGG 2 cut(s) 105, 186
BspACI CCGC 5 cut(s) 196, 207, 275, 314, 470
BspANI GGCC 1 cut(s) 180
BspCNI CTCAG 1 cut(s) 301
BspDI ATCGAT 1 cut(s) 622
BspEI TCCGGA 1 cut(s) 88
BspFNI CGCG 3 cut(s) 205, 207, 275
BspLI GGNNCC 3 cut(s) 87, 149, 591
BspMI ACCTGC 1 cut(s) 317
BspPI GGATC 2 cut(s) 152, 611
BspTNI GGTCTC 1 cut(s) 21
BsrFI RCCGGY 1 cut(s) 113
BssAI RCCGGY 1 cut(s) 113
BssECI CCNNGG 4 cut(s) 105, 150, 151, 186
BssMI GATC 5 cut(s) 157, 245, 603, 616, 623
BssSI CACGAG 2 cut(s) 169, 486
BssT1I CCWWGG 2 cut(s) 105, 186
Bst2BI CACGAG 2 cut(s) 169, 486
Bst2UI CCWGG 1 cut(s) 152
Bst4CI ACNGT 2 cut(s) 52, 502
BstAPI GCANNNNNTGC 1 cut(s) 416
BstBAI YACGTR 1 cut(s) 256
BstC8I GCNNGC 3 cut(s) 115, 196, 421
BstDEI CTNAG 2 cut(s) 309, 390
BstDSI CCRYGG 2 cut(s) 105, 186
BstF5I GGATG 1 cut(s) 127
BstFNI CGCG 3 cut(s) 205, 207, 275
BstHHI GCGC 1 cut(s) 207
BstKTI GATC 5 cut(s) 160, 248, 606, 619, 626
BstMAI GTCTC 2 cut(s) 21, 67
BstMBI GATC 5 cut(s) 157, 245, 603, 616, 623
BstMWI GCNNNNNNNGC 8 cut(s) 35, 110, 191, 204, 211, 314, 323, 416
BstNI CCWGG 1 cut(s) 152
BstNSI RCATGY 2 cut(s) 218, 423
BstSCI CCNGG 1 cut(s) 150
BstSNI TACGTA 1 cut(s) 256
BstUI CGCG 3 cut(s) 205, 207, 275
BstV1I GCAGC 2 cut(s) 122, 203
Bsu15I ATCGAT 1 cut(s) 622
BsuRI GGCC 1 cut(s) 180
BsuTUI ATCGAT 1 cut(s) 622
BtgI CCRYGG 2 cut(s) 105, 186
BtsCI GGATG 1 cut(s) 127
BtsIMutI CAGTG 2 cut(s) 48, 507
BveI ACCTGC 1 cut(s) 317
Cac8I GCNNGC 3 cut(s) 115, 196, 421
CaiI CAGNNNCTG 1 cut(s) 26
CfoI GCGC 1 cut(s) 207
Cfr10I RCCGGY 1 cut(s) 113
Cfr13I GGNCC 2 cut(s) 147, 590
ClaI ATCGAT 1 cut(s) 622
Csp6I GTAC 1 cut(s) 253
CviAII CATG 6 cut(s) 60, 106, 187, 215, 420, 464
CviQI GTAC 1 cut(s) 253
DdeI CTNAG 2 cut(s) 309, 390
DpnI GATC 5 cut(s) 159, 247, 605, 618, 625
DpnII GATC 5 cut(s) 157, 245, 603, 616, 623
Eco105I TACGTA 1 cut(s) 256
Eco130I CCWWGG 2 cut(s) 105, 186
Eco31I GGTCTC 1 cut(s) 21
Eco47I GGWCC 2 cut(s) 147, 590
EcoO109I RGGNCCY 1 cut(s) 590
EcoRII CCWGG 1 cut(s) 150
EcoT14I CCWWGG 2 cut(s) 105, 186
ErhI CCWWGG 2 cut(s) 105, 186
FaeI CATG 6 cut(s) 63, 109, 190, 218, 423, 467
FaqI GGGAC 4 cut(s) 133, 212, 377, 496
FatI CATG 6 cut(s) 59, 105, 186, 214, 419, 463
FauI CCCGC 2 cut(s) 203, 268
FbaI TGATCA 1 cut(s) 616
Fnu4HI GCNGC 3 cut(s) 111, 192, 315
FokI GGATG 1 cut(s) 134
Fsp4HI GCNGC 3 cut(s) 111, 192, 315
FspBI CTAG 2 cut(s) 372, 594
GlaI GCGC 1 cut(s) 206
GluI GCNGC 3 cut(s) 111, 192, 315
GsaI CCCAGC 1 cut(s) 121
GsuI CTGGAG 1 cut(s) 576
HaeIII GGCC 1 cut(s) 180
HapII CCGG 2 cut(s) 89, 114
HhaI GCGC 1 cut(s) 207
Hin1II CATG 6 cut(s) 63, 109, 190, 218, 423, 467
Hin6I GCGC 1 cut(s) 205
HinP1I GCGC 1 cut(s) 205
HinfI GANTC 3 cut(s) 140, 397, 575
HpaII CCGG 2 cut(s) 89, 114
HphI GGTGA 2 cut(s) 167, 406
Hpy188I TCNGA 1 cut(s) 250
Hpy188III TCNNGA 3 cut(s) 20, 89, 243
HpyAV CCTTC 3 cut(s) 472, 514, 580
HpyCH4III ACNGT 2 cut(s) 52, 502
HpyCH4IV ACGT 2 cut(s) 255, 444
HpyCH4V TGCA 4 cut(s) 222, 354, 419, 423
HpyF10VI GCNNNNNNNGC 8 cut(s) 35, 110, 191, 204, 211, 314, 323, 416
HpyF3I CTNAG 2 cut(s) 309, 390
HpySE526I ACGT 2 cut(s) 255, 444
Hsp92II CATG 6 cut(s) 63, 109, 190, 218, 423, 467
HspAI GCGC 1 cut(s) 205
Kpn2I TCCGGA 1 cut(s) 88
KroI GCCGGC 1 cut(s) 113
KroNI GCCGGC 1 cut(s) 115
Ksp22I TGATCA 1 cut(s) 616
Kzo9I GATC 5 cut(s) 157, 245, 603, 616, 623
LmnI GCTCC 3 cut(s) 91, 551, 634
Lsp1109I GCAGC 2 cut(s) 122, 203
LweI GCATC 1 cut(s) 112
MaeI CTAG 2 cut(s) 372, 594
MaeII ACGT 2 cut(s) 255, 444
MalI GATC 5 cut(s) 159, 247, 605, 618, 625
MboI GATC 5 cut(s) 157, 245, 603, 616, 623
MhlI GDGCHC 1 cut(s) 639
MluCI AATT 1 cut(s) 237
MlyI GAGTC 3 cut(s) 149, 406, 584
MmeI TCCRAC 2 cut(s) 507, 581
MnlI CCTC 9 cut(s) 191, 283, 298, 304, 354, 378, 489, 551, 625
MroI TCCGGA 1 cut(s) 88
MroNI GCCGGC 1 cut(s) 113
MspI CCGG 2 cut(s) 89, 114
MspR9I CCNGG 1 cut(s) 152
MvaI CCWGG 1 cut(s) 152
MvnI CGCG 3 cut(s) 205, 207, 275
MwoI GCNNNNNNNGC 8 cut(s) 35, 110, 191, 204, 211, 314, 323, 416
NaeI GCCGGC 1 cut(s) 115
NcoI CCATGG 2 cut(s) 105, 186
NdeII GATC 5 cut(s) 157, 245, 603, 616, 623
NgoMIV GCCGGC 1 cut(s) 113
NlaIII CATG 6 cut(s) 63, 109, 190, 218, 423, 467
NlaIV GGNNCC 3 cut(s) 87, 149, 591
NspI RCATGY 2 cut(s) 218, 423
PaeI GCATGC 1 cut(s) 423
PaqCI CACCTGC 1 cut(s) 317
PasI CCCWGGG 1 cut(s) 151
PdiI GCCGGC 1 cut(s) 115
PkrI GCNGC 3 cut(s) 112, 193, 316
PleI GAGTC 3 cut(s) 148, 405, 583
PpsI GAGTC 3 cut(s) 148, 405, 583
Ppu21I YACGTR 1 cut(s) 256
PpuMI RGGWCCY 1 cut(s) 590
Psp1406I AACGTT 1 cut(s) 444
Psp5II RGGWCCY 1 cut(s) 590
Psp6I CCWGG 1 cut(s) 150
PspFI CCCAGC 1 cut(s) 117
PspGI CCWGG 1 cut(s) 150
PspN4I GGNNCC 3 cut(s) 87, 149, 591
PspPI GGNCC 2 cut(s) 147, 590
PspPPI RGGWCCY 1 cut(s) 590
PstNI CAGNNNCTG 1 cut(s) 26
RsaI GTAC 1 cut(s) 254
RsaNI GTAC 1 cut(s) 253
SatI GCNGC 3 cut(s) 111, 192, 315
Sau3AI GATC 5 cut(s) 157, 245, 603, 616, 623
Sau96I GGNCC 2 cut(s) 147, 590
SchI GAGTC 3 cut(s) 149, 406, 584
ScrFI CCNGG 1 cut(s) 152
SduI GDGCHC 1 cut(s) 639
SfaNI GCATC 1 cut(s) 112
SinI GGWCC 2 cut(s) 147, 590
SnaBI TACGTA 1 cut(s) 256
SphI GCATGC 1 cut(s) 423
Sse9I AATT 1 cut(s) 237
SsiI CCGC 5 cut(s) 196, 207, 275, 314, 470
SspMI CTAG 2 cut(s) 372, 594
StyD4I CCNGG 1 cut(s) 150
StyI CCWWGG 2 cut(s) 105, 186
TaaI ACNGT 2 cut(s) 52, 502
TaiI ACGT 2 cut(s) 258, 447
TaqI TCGA 1 cut(s) 622
TasI AATT 1 cut(s) 237
TauI GCSGC 1 cut(s) 317
TscAI CASTG 2 cut(s) 55, 507
TseI GCWGC 2 cut(s) 110, 191
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 2 cut(s) 55, 507
VpaK11BI GGWCC 2 cut(s) 147, 590
XapI RAATTY 1 cut(s) 237
XceI RCATGY 2 cut(s) 218, 423
XspI CTAG 2 cut(s) 372, 594
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.