FvH4_7g11620

Protein of unknown function (DUF1442)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0015006
Physical Location & Seq
Forward (+)
10748060 .. 10749479
1420 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g11620.t1

Sequence Viewer

Length: 825 bp
ATGTCAACGATAAACCTCGCTAGCGACAACTCTCTCTTTCTCTCATCACCATTTATAAATAACCTCAGCACACAGATAGCTCTAACTTCAGTACTCTACCCCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTCTTCCAAGCTCAAACCACCCACAGAGAGAGTTGCTGAGATTATGAAGCTCATTTGGTCCCCAGAAACAGCTTCCAAAGCTTACTTAGACACTGTCAAATCATGTGAGCAATTTAGAGAATCTGGTGTTGCCGAGCTGCTCTCTGCCATGGCGGCCGGCTGGAACGCAAAGCTAATAGTGGAAGCGTGGTCCTACGGTGATCCGATCGCCACCAGCCTCGGCCTGGCCACGGCTGCCCGCCACACGTGCGGACGTCACGTGTGCATAGTTCCGGACGAACGTTCGAGGGTGGAGTACCTTAAGGCCATGCGTAACGCACCGGTGCTGCCCGAGGTGGTGGTTGGAGAGTCCGAGGTGGCGACGGCGGGAGTTGATTTCTTGGTGGTTGACTGTAGCCGGAGGGAGTTCGCTAGGGTTTTAAGGACAGCCAAGGTTAGCCCTAGAGGAGCTGTTTTTGCATGCAAGAATGCTTGGCAGAGAAACGTTAAGGGTTTCAGATGGCATGGTGTAGTGGAGAGGGGGACTCGTGTGGTGAGGTCGGTGTTTTTGCCGGTGGGGAAAGGGTTGGATATTGCTCATATAGGGTACGGCGGCGGAACTGTGGGGCCGATAAGTACAATTAGGAAGGGTCCTGGCCGTTGGATCAAGCATATTGATCACCGGTCCGGCGAGGAGCACTTGTTCCGGGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1442

Protein Analysis

275

Amino Acids

29.96

Weight (kDa)

9.48

Isoelectric Point (pI)

42.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1442 PF07279 59 - 273 1e-93 Protein of unknown function (DUF1442)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015006)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G45360 AT3G60780
fragaria_vesca FvH4_7g11620
malus_domestica MD07G1120900.v1.1
prunus_persica Prupe.2G144100_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0350051
rosa_laevigata RLG00000028503
rosa_multiflora Rmu_sc0003674.1_g000019
rosa_roxburghii Rroxscaffold_4G00305080
rosa_rugosa Rorug01G0208300
rosa_samantha Rh1AG224600 Rh1BG191900 Rh1CG209300 Rh1DG220400
rosa_wichuraiana Rw1G019190 Rw1G019310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 56
AatII GACGTC 1 cut(s) 388
AccIII TCCGGA 1 cut(s) 403
AciI CCGC 6 cut(s) 284, 370, 381, 497, 723, 726
AclI AACGTT 2 cut(s) 412, 615
AclWI GGATC 2 cut(s) 326, 782
AcoI YGGCCR 3 cut(s) 285, 357, 766
AcuI CTGAAG 1 cut(s) 72
AcvI CACGTG 2 cut(s) 378, 391
AcyI GRCGYC 1 cut(s) 385
AfaI GTAC 4 cut(s) 93, 428, 719, 748
AfiI CCNNNNNNNGG 2 cut(s) 355, 361
AflII CTTAAG 1 cut(s) 431
AflIII ACRYGT 2 cut(s) 375, 390
AgeI ACCGGT 2 cut(s) 451, 792
AjnI CCWGG 2 cut(s) 354, 763
AloI GAACNNNNNNTCC 1 cut(s) 797
AluBI AGCT 8 cut(s) 80, 142, 181, 203, 212, 268, 304, 581
AluI AGCT 8 cut(s) 80, 142, 181, 203, 212, 268, 304, 581
Alw21I GWGCWC 1 cut(s) 810
AlwI GGATC 2 cut(s) 326, 782
Ama87I CYCGRG 1 cut(s) 461
Aor13HI TCCGGA 1 cut(s) 403
AoxI GGCC 6 cut(s) 285, 352, 357, 435, 737, 766
ApeKI GCWGC 3 cut(s) 268, 365, 457
AsiGI ACCGGT 2 cut(s) 451, 792
AspS9I GGNCC 5 cut(s) 189, 321, 737, 761, 795
AsuC2I CCSGG 1 cut(s) 818
AsuHPI GGTGA 4 cut(s) 39, 341, 676, 782
AsuNHI GCTAGC 1 cut(s) 20
AvaI CYCGRG 1 cut(s) 461
AvaII GGWCC 4 cut(s) 189, 321, 761, 795
BalI TGGCCA 1 cut(s) 359
BauI CACGAG 1 cut(s) 657
BbrPI CACGTG 2 cut(s) 378, 391
Bbv12I GWGCWC 1 cut(s) 810
BbvCI CCTCAGC 1 cut(s) 65
BbvI GCAGC 3 cut(s) 255, 352, 444
BccI CCATC 1 cut(s) 624
BceAI ACGGC 4 cut(s) 378, 510, 736, 753
BciT130I CCWGG 2 cut(s) 356, 765
BclI TGATCA 1 cut(s) 787
BcnI CCSGG 1 cut(s) 818
BfaI CTAG 3 cut(s) 21, 543, 573
BfmI CTRYAG 1 cut(s) 523
BfrI CTTAAG 1 cut(s) 431
BglI GCCNNNNNGGC 1 cut(s) 284
BisI GCNGC 5 cut(s) 269, 285, 366, 458, 724
BlsI GCNGC 5 cut(s) 270, 286, 367, 459, 725
BmcAI AGTACT 1 cut(s) 93
Bme1390I CCNGG 3 cut(s) 356, 765, 818
Bme18I GGWCC 4 cut(s) 189, 321, 761, 795
BmeT110I CYCGRG 1 cut(s) 461
BmgT120I GGNCC 5 cut(s) 189, 321, 737, 761, 795
BmiI GGNNCC 3 cut(s) 191, 738, 762
BmrFI CCNGG 3 cut(s) 356, 765, 818
BmtI GCTAGC 1 cut(s) 24
BplI GAGNNNNNCTC 4 cut(s) 257, 289, 640, 672
Bpu10I CCTNAGC 1 cut(s) 65
BpuMI CCSGG 1 cut(s) 818
BsaAI YACGTR 2 cut(s) 378, 391
BsaHI GRCGYC 1 cut(s) 385
BsaJI CCNNGG 6 cut(s) 279, 349, 360, 462, 483, 561
BsaWI WCCGGW 3 cut(s) 403, 451, 792
BsaXI ACNNNNNCTCC 1 cut(s) 797
Bsc4I CCNNNNNNNGG 2 cut(s) 355, 361
Bse118I RCCGGY 4 cut(s) 287, 451, 682, 792
BseAI TCCGGA 1 cut(s) 403
BseBI CCWGG 2 cut(s) 356, 765
BseDI CCNNGG 6 cut(s) 279, 349, 360, 462, 483, 561
BseLI CCNNNNNNNGG 2 cut(s) 355, 361
BseMII CTCAG 2 cut(s) 79, 159
BseRI GAGGAG 2 cut(s) 591, 818
BseX3I CGGCCG 1 cut(s) 285
BseXI GCAGC 3 cut(s) 255, 352, 444
Bsh1285I CGRYCG 2 cut(s) 288, 339
BshFI GGCC 6 cut(s) 287, 354, 359, 437, 739, 768
BshTI ACCGGT 2 cut(s) 451, 792
BsiEI CGRYCG 2 cut(s) 288, 339
BsiHKAI GWGCWC 1 cut(s) 810
BsiHKCI CYCGRG 1 cut(s) 461
BsiSI CCGG 8 cut(s) 288, 404, 452, 529, 683, 793, 798, 817
BslFI GGGAC 2 cut(s) 175, 667
BslI CCNNNNNNNGG 2 cut(s) 355, 361
BsmFI GGGAC 2 cut(s) 175, 667
BsmI GAATGC 1 cut(s) 604
BsnI GGCC 6 cut(s) 287, 354, 359, 437, 739, 768
BsoBI CYCGRG 1 cut(s) 461
Bsp1286I GDGCHC 1 cut(s) 810
Bsp13I TCCGGA 1 cut(s) 403
Bsp143I GATC 4 cut(s) 331, 336, 774, 787
Bsp19I CCATGG 1 cut(s) 279
BspACI CCGC 6 cut(s) 284, 370, 381, 497, 723, 726
BspANI GGCC 6 cut(s) 287, 354, 359, 437, 739, 768
BspCNI CTCAG 2 cut(s) 78, 160
BspEI TCCGGA 1 cut(s) 403
BspLI GGNNCC 3 cut(s) 191, 738, 762
BspOI GCTAGC 1 cut(s) 24
BspPI GGATC 2 cut(s) 326, 782
BspTI CTTAAG 1 cut(s) 431
BsrFI RCCGGY 4 cut(s) 287, 451, 682, 792
BssAI RCCGGY 4 cut(s) 287, 451, 682, 792
BssECI CCNNGG 6 cut(s) 279, 349, 360, 462, 483, 561
BssMI GATC 4 cut(s) 331, 336, 774, 787
BssNI GRCGYC 1 cut(s) 385
BssSI CACGAG 1 cut(s) 657
BssT1I CCWWGG 2 cut(s) 279, 561
Bst2BI CACGAG 1 cut(s) 657
Bst2UI CCWGG 2 cut(s) 356, 765
Bst4CI ACNGT 4 cut(s) 226, 329, 524, 733
Bst6I CTCTTC 1 cut(s) 139
BstACI GRCGYC 1 cut(s) 385
BstAFI CTTAAG 1 cut(s) 431
BstBAI YACGTR 2 cut(s) 378, 391
BstC8I GCNNGC 4 cut(s) 22, 289, 370, 592
BstDEI CTNAG 3 cut(s) 65, 168, 217
BstDSI CCRYGG 2 cut(s) 279, 360
BstKTI GATC 4 cut(s) 334, 339, 777, 790
BstMBI GATC 4 cut(s) 331, 336, 774, 787
BstMCI CGRYCG 2 cut(s) 288, 339
BstMWI GCNNNNNNNGC 5 cut(s) 209, 284, 365, 378, 587
BstNI CCWGG 2 cut(s) 356, 765
BstNSI RCATGY 1 cut(s) 594
BstSCI CCNGG 3 cut(s) 354, 763, 816
BstSFI CTRYAG 1 cut(s) 523
BstV1I GCAGC 3 cut(s) 255, 352, 444
BstZI CGGCCG 1 cut(s) 285
BsuRI GGCC 6 cut(s) 287, 354, 359, 437, 739, 768
BtgI CCRYGG 2 cut(s) 279, 360
BtsIMutI CAGTG 1 cut(s) 222
Cac8I GCNNGC 4 cut(s) 22, 289, 370, 592
Cfr10I RCCGGY 4 cut(s) 287, 451, 682, 792
Cfr13I GGNCC 5 cut(s) 189, 321, 737, 761, 795
CpoI CGGWCCG 1 cut(s) 795
Csp6I GTAC 4 cut(s) 92, 427, 718, 747
CspAI ACCGGT 2 cut(s) 451, 792
CspI CGGWCCG 1 cut(s) 795
CviAII CATG 5 cut(s) 234, 280, 439, 591, 635
CviQI GTAC 4 cut(s) 92, 427, 718, 747
DdeI CTNAG 3 cut(s) 65, 168, 217
DpnI GATC 4 cut(s) 333, 338, 776, 789
DpnII GATC 4 cut(s) 331, 336, 774, 787
EaeI YGGCCR 3 cut(s) 285, 357, 766
EagI CGGCCG 1 cut(s) 285
Eam1104I CTCTTC 1 cut(s) 139
EarI CTCTTC 1 cut(s) 139
EciI GGCGGA 1 cut(s) 741
EclXI CGGCCG 1 cut(s) 285
Eco130I CCWWGG 2 cut(s) 279, 561
Eco47I GGWCC 4 cut(s) 189, 321, 761, 795
Eco52I CGGCCG 1 cut(s) 285
Eco57I CTGAAG 1 cut(s) 72
Eco72I CACGTG 2 cut(s) 378, 391
Eco88I CYCGRG 1 cut(s) 461
EcoO109I RGGNCCY 1 cut(s) 761
EcoRII CCWGG 2 cut(s) 354, 763
EcoT14I CCWWGG 2 cut(s) 279, 561
ErhI CCWWGG 2 cut(s) 279, 561
FaeI CATG 5 cut(s) 237, 283, 442, 594, 638
FaqI GGGAC 2 cut(s) 175, 667
FatI CATG 5 cut(s) 233, 279, 438, 590, 634
FauI CCCGC 2 cut(s) 377, 490
FbaI TGATCA 1 cut(s) 787
Fnu4HI GCNGC 5 cut(s) 269, 285, 366, 458, 724
Fsp4HI GCNGC 5 cut(s) 269, 285, 366, 458, 724
FspBI CTAG 3 cut(s) 21, 543, 573
GluI GCNGC 5 cut(s) 269, 285, 366, 458, 724
HaeIII GGCC 6 cut(s) 287, 354, 359, 437, 739, 768
HapII CCGG 8 cut(s) 288, 404, 452, 529, 683, 793, 798, 817
Hin1I GRCGYC 1 cut(s) 385
Hin1II CATG 5 cut(s) 237, 283, 442, 594, 638
HincII GTYRAC 2 cut(s) 6, 520
HindII GTYRAC 2 cut(s) 6, 520
HindIII AAGCTT 1 cut(s) 210
HinfI GANTC 3 cut(s) 251, 479, 655
HpaII CCGG 8 cut(s) 288, 404, 452, 529, 683, 793, 798, 817
HphI GGTGA 4 cut(s) 39, 341, 676, 782
Hpy166II GTNNAC 2 cut(s) 6, 520
Hpy188I TCNGA 3 cut(s) 336, 484, 629
Hpy188III TCNNGA 1 cut(s) 404
Hpy8I GTNNAC 2 cut(s) 6, 520
Hpy99I CGWCG 1 cut(s) 496
HpyAV CCTTC 1 cut(s) 751
HpyCH4III ACNGT 4 cut(s) 226, 329, 524, 733
HpyCH4IV ACGT 5 cut(s) 377, 385, 390, 412, 615
HpyCH4V TGCA 3 cut(s) 396, 590, 594
HpyF10VI GCNNNNNNNGC 5 cut(s) 209, 284, 365, 378, 587
HpyF3I CTNAG 3 cut(s) 65, 168, 217
HpySE526I ACGT 5 cut(s) 377, 385, 390, 412, 615
Hsp92I GRCGYC 1 cut(s) 385
Hsp92II CATG 5 cut(s) 237, 283, 442, 594, 638
Kpn2I TCCGGA 1 cut(s) 403
KroI GCCGGC 1 cut(s) 287
KroNI GCCGGC 1 cut(s) 289
Ksp22I TGATCA 1 cut(s) 787
Kzo9I GATC 4 cut(s) 331, 336, 774, 787
LmnI GCTCC 2 cut(s) 578, 805
Lsp1109I GCAGC 3 cut(s) 255, 352, 444
MaeI CTAG 3 cut(s) 21, 543, 573
MaeII ACGT 5 cut(s) 377, 385, 390, 412, 615
MaeIII GTNAC 2 cut(s) 386, 443
MalI GATC 4 cut(s) 333, 338, 776, 789
MboI GATC 4 cut(s) 331, 336, 774, 787
MboII GAAGA 1 cut(s) 126
MhlI GDGCHC 1 cut(s) 810
MlsI TGGCCA 1 cut(s) 359
MluCI AATT 2 cut(s) 242, 750
MluNI TGGCCA 1 cut(s) 359
MlyI GAGTC 2 cut(s) 488, 649
MmeI TCCRAC 3 cut(s) 454, 678, 752
Mox20I TGGCCA 1 cut(s) 359
MroI TCCGGA 1 cut(s) 403
MroNI GCCGGC 1 cut(s) 287
MscI TGGCCA 1 cut(s) 359
MseI TTAA 3 cut(s) 432, 551, 618
Msp20I TGGCCA 1 cut(s) 359
MspCI CTTAAG 1 cut(s) 431
MspI CCGG 8 cut(s) 288, 404, 452, 529, 683, 793, 798, 817
MspR9I CCNGG 3 cut(s) 356, 765, 818
Mva1269I GAATGC 1 cut(s) 604
MvaI CCWGG 2 cut(s) 356, 765
MwoI GCNNNNNNNGC 5 cut(s) 209, 284, 365, 378, 587
NaeI GCCGGC 1 cut(s) 289
NciI CCSGG 1 cut(s) 818
NcoI CCATGG 1 cut(s) 279
NdeII GATC 4 cut(s) 331, 336, 774, 787
NgoMIV GCCGGC 1 cut(s) 287
NheI GCTAGC 1 cut(s) 20
NlaIII CATG 5 cut(s) 237, 283, 442, 594, 638
NlaIV GGNNCC 3 cut(s) 191, 738, 762
NmeAIII GCCGAG 2 cut(s) 289, 330
NmuCI GTSAC 1 cut(s) 386
NspI RCATGY 1 cut(s) 594
PaeI GCATGC 1 cut(s) 594
PctI GAATGC 1 cut(s) 604
PdiI GCCGGC 1 cut(s) 289
PfeI GAWTC 1 cut(s) 251
PflFI GACNNNGTC 1 cut(s) 224
PfoI TCCNGGA 1 cut(s) 816
PinAI ACCGGT 2 cut(s) 451, 792
PkrI GCNGC 5 cut(s) 270, 286, 367, 459, 725
Ple19I CGATCG 1 cut(s) 339
PleI GAGTC 2 cut(s) 487, 649
PmaCI CACGTG 2 cut(s) 378, 391
PmlI CACGTG 2 cut(s) 378, 391
PpsI GAGTC 2 cut(s) 487, 649
Ppu21I YACGTR 2 cut(s) 378, 391
PpuMI RGGWCCY 1 cut(s) 761
PsiI TTATAA 1 cut(s) 56
Psp1406I AACGTT 2 cut(s) 412, 615
Psp5II RGGWCCY 1 cut(s) 761
Psp6I CCWGG 2 cut(s) 354, 763
PspCI CACGTG 2 cut(s) 378, 391
PspGI CCWGG 2 cut(s) 354, 763
PspN4I GGNNCC 3 cut(s) 191, 738, 762
PspPI GGNCC 5 cut(s) 189, 321, 737, 761, 795
PspPPI RGGWCCY 1 cut(s) 761
PsyI GACNNNGTC 1 cut(s) 224
PvuI CGATCG 1 cut(s) 339
RsaI GTAC 4 cut(s) 93, 428, 719, 748
RsaNI GTAC 4 cut(s) 92, 427, 718, 747
Rsr2I CGGWCCG 1 cut(s) 795
RsrII CGGWCCG 1 cut(s) 795
SaqAI TTAA 3 cut(s) 432, 551, 618
SatI GCNGC 5 cut(s) 269, 285, 366, 458, 724
Sau3AI GATC 4 cut(s) 331, 336, 774, 787
Sau96I GGNCC 5 cut(s) 189, 321, 737, 761, 795
ScaI AGTACT 1 cut(s) 93
SchI GAGTC 2 cut(s) 488, 649
ScrFI CCNGG 3 cut(s) 356, 765, 818
SduI GDGCHC 1 cut(s) 810
SfcI CTRYAG 1 cut(s) 523
SgrAI CRCCGGYG 1 cut(s) 451
SinI GGWCC 4 cut(s) 189, 321, 761, 795
SmlI CTYRAG 1 cut(s) 431
SmoI CTYRAG 1 cut(s) 431
SphI GCATGC 1 cut(s) 594
Sse9I AATT 2 cut(s) 242, 750
SsiI CCGC 6 cut(s) 284, 370, 381, 497, 723, 726
SspMI CTAG 3 cut(s) 21, 543, 573
StyD4I CCNGG 3 cut(s) 354, 763, 816
StyI CCWWGG 2 cut(s) 279, 561
TaaI ACNGT 4 cut(s) 226, 329, 524, 733
TaiI ACGT 5 cut(s) 380, 388, 393, 415, 618
TaqI TCGA 1 cut(s) 416
TasI AATT 2 cut(s) 242, 750
TatI WGTACW 2 cut(s) 91, 746
TauI GCSGC 2 cut(s) 287, 726
TfiI GAWTC 1 cut(s) 251
Tru1I TTAA 3 cut(s) 432, 551, 618
Tru9I TTAA 3 cut(s) 432, 551, 618
TscAI CASTG 1 cut(s) 229
TseFI GTSAC 1 cut(s) 386
TseI GCWGC 3 cut(s) 268, 365, 457
Tsp45I GTSAC 1 cut(s) 386
TspDTI ATGAA 1 cut(s) 191
TspRI CASTG 1 cut(s) 229
Tth111I GACNNNGTC 1 cut(s) 224
Vha464I CTTAAG 1 cut(s) 431
VpaK11BI GGWCC 4 cut(s) 189, 321, 761, 795
XceI RCATGY 1 cut(s) 594
XcmI CCANNNNNNNNNTGG 1 cut(s) 352
XspI CTAG 3 cut(s) 21, 543, 573
ZraI GACGTC 1 cut(s) 386
ZrmI AGTACT 1 cut(s) 93
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.