Rorug01G0208300

Protein of unknown function (DUF1442)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0015006
Physical Location & Seq
Reverse (-)
29392820 .. 29393362
543 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0208300.1

Sequence Viewer

Length: 543 bp
ATGTACTCTGCCACAAACATGATGACTTCCGAAGATCCCAATAGTTGTGCCATGAGAATGCTCGCGGATGGCACAGGACAAGTTACACCACATCAAAAACCACAAGTGTATCTCCAGTGCAGCCCTCCCCACCCTCCGGATGCCTTGGGATATTCGTTGGACCAGTGCCCGATTTGCTTGCAGCCGTGTCCCTACGAAGGCAACCATGAAAGAGTCTGCCTAGTCTCTTGCGGGCATGTATACGGCCGGTCTTGCATAACTAGATGGATTGAACACAAAAAGGCCAACGCAAAGTGCCCGTCGTGCAACAAGAAATGCAAGTTGAGGGACATGAAAAGGATTTATGCATCACCCGCGGAGGATCAAAGTAGTGCACAAAGAATGAAAGAACTCGAGGCTGAGGTAGTTTCTCTGAGGGCTTCAAACGCTGCTTTAATCGATATAGGGAAGTTAAATGGCTATGTATATAATGCACAACAAAAAGAAAACAAGAAGTTGAAGGCAATGCGCATCAGGGAGACAGCAAGTTATAGTATGTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1442

Protein Analysis

180

Amino Acids

20.2

Weight (kDa)

8.84

Isoelectric Point (pI)

49.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RING_2 PF13639 54 - 103 1.7e-08 Ring finger domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015006)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G45360 AT3G60780
fragaria_vesca FvH4_7g11620
malus_domestica MD07G1120900.v1.1
prunus_persica Prupe.2G144100_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0350051
rosa_laevigata RLG00000028503
rosa_multiflora Rmu_sc0003674.1_g000019
rosa_roxburghii Rroxscaffold_4G00305080
rosa_rugosa Rorug01G0208300
rosa_samantha Rh1AG224600 Rh1BG191900 Rh1CG209300 Rh1DG220400
rosa_wichuraiana Rw1G019190 Rw1G019310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 509
AccI GTMKAC 1 cut(s) 240
AccII CGCG 2 cut(s) 65, 356
AccIII TCCGGA 1 cut(s) 136
AciI CCGC 4 cut(s) 65, 231, 354, 356
AclWI GGATC 2 cut(s) 29, 369
AcoI YGGCCR 1 cut(s) 244
AfaI GTAC 1 cut(s) 5
AfiI CCNNNNNNNGG 2 cut(s) 136, 197
AgsI TTSAA 3 cut(s) 272, 423, 499
Alw21I GWGCWC 1 cut(s) 376
Alw26I GTCTC 2 cut(s) 229, 512
Alw44I GTGCAC 1 cut(s) 372
AlwI GGATC 2 cut(s) 29, 369
Ama87I CYCGRG 1 cut(s) 392
Aor13HI TCCGGA 1 cut(s) 136
AoxI GGCC 2 cut(s) 244, 282
ApaLI GTGCAC 1 cut(s) 372
ApeKI GCWGC 3 cut(s) 120, 181, 428
ArsI GACNNNNNNTTYG 2 cut(s) 284, 316
AspLEI GCGC 1 cut(s) 510
AspS9I GGNCC 1 cut(s) 160
AsuHPI GGTGA 1 cut(s) 342
AvaI CYCGRG 1 cut(s) 392
AvaII GGWCC 1 cut(s) 160
BaeGI GKGCMC 3 cut(s) 170, 299, 376
BaeI ACNNNNGTAYC 2 cut(s) 92, 125
Bbv12I GWGCWC 1 cut(s) 376
BbvCI CCTCAGC 1 cut(s) 399
BbvI GCAGC 3 cut(s) 132, 193, 415
BccI CCATC 2 cut(s) 62, 258
BceAI ACGGC 2 cut(s) 169, 259
BcgI CGANNNNNNTGC 2 cut(s) 160, 194
BcoDI GTCTC 2 cut(s) 229, 512
BfaI CTAG 2 cut(s) 221, 261
BisI GCNGC 3 cut(s) 121, 182, 429
BlsI GCNGC 3 cut(s) 122, 183, 430
Bme18I GGWCC 1 cut(s) 160
BmeT110I CYCGRG 1 cut(s) 392
BmgT120I GGNCC 1 cut(s) 160
BmsI GCATC 3 cut(s) 130, 356, 519
BpmI CTGGAG 1 cut(s) 98
Bpu10I CCTNAGC 1 cut(s) 399
Bsa29I ATCGAT 1 cut(s) 438
BsaJI CCNNGG 2 cut(s) 144, 354
BsaWI WCCGGW 1 cut(s) 136
Bsc4I CCNNNNNNNGG 2 cut(s) 136, 197
Bse118I RCCGGY 1 cut(s) 246
Bse1I ACTGG 2 cut(s) 115, 163
Bse3DI GCAATG 1 cut(s) 510
BseAI TCCGGA 1 cut(s) 136
BseCI ATCGAT 1 cut(s) 438
BseDI CCNNGG 2 cut(s) 144, 354
BseGI GGATG 2 cut(s) 73, 145
BseLI CCNNNNNNNGG 2 cut(s) 136, 197
BseMI GCAATG 1 cut(s) 510
BseMII CTCAG 2 cut(s) 390, 404
BseNI ACTGG 2 cut(s) 115, 163
BseSI GKGCMC 3 cut(s) 170, 299, 376
BseX3I CGGCCG 1 cut(s) 244
BseXI GCAGC 3 cut(s) 132, 193, 415
BsgI GTGCAG 1 cut(s) 139
Bsh1236I CGCG 2 cut(s) 65, 356
Bsh1285I CGRYCG 1 cut(s) 247
BshFI GGCC 2 cut(s) 246, 284
BshVI ATCGAT 1 cut(s) 438
BsiEI CGRYCG 1 cut(s) 247
BsiHKAI GWGCWC 1 cut(s) 376
BsiHKCI CYCGRG 1 cut(s) 392
BsiSI CCGG 2 cut(s) 137, 247
BslFI GGGAC 2 cut(s) 174, 341
BslI CCNNNNNNNGG 2 cut(s) 136, 197
BsmAI GTCTC 2 cut(s) 229, 512
BsmFI GGGAC 2 cut(s) 174, 341
BsmI GAATGC 1 cut(s) 63
BsnI GGCC 2 cut(s) 246, 284
BsoBI CYCGRG 1 cut(s) 392
Bsp1286I GDGCHC 3 cut(s) 170, 299, 376
Bsp13I TCCGGA 1 cut(s) 136
Bsp143I GATC 2 cut(s) 34, 361
BspACI CCGC 4 cut(s) 65, 231, 354, 356
BspANI GGCC 2 cut(s) 246, 284
BspCNI CTCAG 2 cut(s) 391, 405
BspDI ATCGAT 1 cut(s) 438
BspEI TCCGGA 1 cut(s) 136
BspFNI CGCG 2 cut(s) 65, 356
BspPI GGATC 2 cut(s) 29, 369
BsrDI GCAATG 1 cut(s) 510
BsrFI RCCGGY 1 cut(s) 246
BsrI ACTGG 2 cut(s) 115, 163
BssAI RCCGGY 1 cut(s) 246
BssECI CCNNGG 2 cut(s) 144, 354
BssMI GATC 2 cut(s) 34, 361
BssNAI GTATAC 1 cut(s) 241
BssT1I CCWWGG 1 cut(s) 144
Bst1107I GTATAC 1 cut(s) 241
BstC8I GCNNGC 3 cut(s) 63, 179, 233
BstDEI CTNAG 2 cut(s) 399, 413
BstDSI CCRYGG 1 cut(s) 354
BstF5I GGATG 2 cut(s) 73, 145
BstFNI CGCG 2 cut(s) 65, 356
BstHHI GCGC 1 cut(s) 510
BstKTI GATC 2 cut(s) 37, 364
BstMAI GTCTC 2 cut(s) 229, 512
BstMBI GATC 2 cut(s) 34, 361
BstMCI CGRYCG 1 cut(s) 247
BstMWI GCNNNNNNNGC 5 cut(s) 174, 252, 303, 353, 425
BstNSI RCATGY 1 cut(s) 239
BstSLI GKGCMC 3 cut(s) 170, 299, 376
BstUI CGCG 2 cut(s) 65, 356
BstV1I GCAGC 3 cut(s) 132, 193, 415
BstX2I RGATCY 1 cut(s) 34
BstYI RGATCY 1 cut(s) 34
BstZ17I GTATAC 1 cut(s) 241
BstZI CGGCCG 1 cut(s) 244
Bsu15I ATCGAT 1 cut(s) 438
BsuRI GGCC 2 cut(s) 246, 284
BsuTUI ATCGAT 1 cut(s) 438
BtgI CCRYGG 1 cut(s) 354
BtsCI GGATG 2 cut(s) 73, 145
BtsIMutI CAGTG 2 cut(s) 122, 170
Cac8I GCNNGC 3 cut(s) 63, 179, 233
CfoI GCGC 1 cut(s) 510
Cfr10I RCCGGY 1 cut(s) 246
Cfr13I GGNCC 1 cut(s) 160
Cfr42I CCGCGG 1 cut(s) 357
ClaI ATCGAT 1 cut(s) 438
Csp6I GTAC 1 cut(s) 4
CviAII CATG 5 cut(s) 19, 52, 206, 236, 331
CviJI RGCY 7 cut(s) 123, 184, 246, 284, 398, 419, 459
CviKI_1 RGCY 7 cut(s) 123, 184, 246, 284, 398, 419, 459
CviQI GTAC 1 cut(s) 4
DdeI CTNAG 2 cut(s) 399, 413
DpnI GATC 2 cut(s) 36, 363
DpnII GATC 2 cut(s) 34, 361
EaeI YGGCCR 1 cut(s) 244
EagI CGGCCG 1 cut(s) 244
EclXI CGGCCG 1 cut(s) 244
Eco130I CCWWGG 1 cut(s) 144
Eco47I GGWCC 1 cut(s) 160
Eco52I CGGCCG 1 cut(s) 244
Eco88I CYCGRG 1 cut(s) 392
EcoT14I CCWWGG 1 cut(s) 144
EcoT22I ATGCAT 1 cut(s) 349
ErhI CCWWGG 1 cut(s) 144
FaeI CATG 5 cut(s) 22, 55, 209, 239, 334
FaqI GGGAC 2 cut(s) 174, 341
FatI CATG 5 cut(s) 18, 51, 205, 235, 330
FauI CCCGC 2 cut(s) 224, 361
FblI GTMKAC 1 cut(s) 240
Fnu4HI GCNGC 3 cut(s) 121, 182, 429
FokI GGATG 2 cut(s) 80, 152
Fsp4HI GCNGC 3 cut(s) 121, 182, 429
FspAI RTGCGCAY 1 cut(s) 509
FspBI CTAG 2 cut(s) 221, 261
FspI TGCGCA 1 cut(s) 509
GlaI GCGC 1 cut(s) 509
GluI GCNGC 3 cut(s) 121, 182, 429
GsuI CTGGAG 1 cut(s) 98
HaeIII GGCC 2 cut(s) 246, 284
HapII CCGG 2 cut(s) 137, 247
HhaI GCGC 1 cut(s) 510
Hin1II CATG 5 cut(s) 22, 55, 209, 239, 334
Hin6I GCGC 1 cut(s) 508
HinP1I GCGC 1 cut(s) 508
HinfI GANTC 1 cut(s) 213
HpaII CCGG 2 cut(s) 137, 247
HphI GGTGA 1 cut(s) 342
Hpy166II GTNNAC 2 cut(s) 241, 374
Hpy188I TCNGA 2 cut(s) 31, 414
Hpy188III TCNNGA 1 cut(s) 137
Hpy8I GTNNAC 2 cut(s) 241, 374
Hpy99I CGWCG 1 cut(s) 304
HpyAV CCTTC 2 cut(s) 191, 493
HpyCH4V TGCA 8 cut(s) 120, 181, 255, 306, 318, 347, 374, 473
HpyF10VI GCNNNNNNNGC 5 cut(s) 174, 252, 303, 353, 425
HpyF3I CTNAG 2 cut(s) 399, 413
Hsp92II CATG 5 cut(s) 22, 55, 209, 239, 334
HspAI GCGC 1 cut(s) 508
Kpn2I TCCGGA 1 cut(s) 136
KspI CCGCGG 1 cut(s) 357
Kzo9I GATC 2 cut(s) 34, 361
LpnPI CCDG 6 cut(s) 60, 128, 150, 176, 260, 499
Lsp1109I GCAGC 3 cut(s) 132, 193, 415
LweI GCATC 3 cut(s) 130, 356, 519
MaeI CTAG 2 cut(s) 221, 261
MaeIII GTNAC 1 cut(s) 82
MalI GATC 2 cut(s) 36, 363
MboI GATC 2 cut(s) 34, 361
MboII GAAGA 1 cut(s) 44
MflI RGATCY 1 cut(s) 34
MhlI GDGCHC 3 cut(s) 170, 299, 376
MlyI GAGTC 1 cut(s) 222
MmeI TCCRAC 1 cut(s) 138
MnlI CCTC 7 cut(s) 135, 144, 318, 352, 388, 394, 408
Mph1103I ATGCAT 1 cut(s) 349
MroI TCCGGA 1 cut(s) 136
MseI TTAA 3 cut(s) 434, 452, 541
MslI CAYNNNNRTG 2 cut(s) 17, 56
MspA1I CMGCKG 1 cut(s) 356
MspI CCGG 2 cut(s) 137, 247
Mva1269I GAATGC 1 cut(s) 63
MvnI CGCG 2 cut(s) 65, 356
MwoI GCNNNNNNNGC 5 cut(s) 174, 252, 303, 353, 425
NdeII GATC 2 cut(s) 34, 361
NlaIII CATG 5 cut(s) 22, 55, 209, 239, 334
NsbI TGCGCA 1 cut(s) 509
NsiI ATGCAT 1 cut(s) 349
NspI RCATGY 1 cut(s) 239
PaeR7I CTCGAG 1 cut(s) 392
PctI GAATGC 1 cut(s) 63
PkrI GCNGC 3 cut(s) 122, 183, 430
PleI GAGTC 1 cut(s) 221
PpsI GAGTC 1 cut(s) 221
PspPI GGNCC 1 cut(s) 160
PspXI VCTCGAGB 1 cut(s) 392
PsuI RGATCY 1 cut(s) 34
RsaI GTAC 1 cut(s) 5
RsaNI GTAC 1 cut(s) 4
RseI CAYNNNNRTG 2 cut(s) 17, 56
SacII CCGCGG 1 cut(s) 357
SaqAI TTAA 3 cut(s) 434, 452, 541
SatI GCNGC 3 cut(s) 121, 182, 429
Sau3AI GATC 2 cut(s) 34, 361
Sau96I GGNCC 1 cut(s) 160
SchI GAGTC 1 cut(s) 222
SduI GDGCHC 3 cut(s) 170, 299, 376
SetI ASST 1 cut(s) 405
SfaNI GCATC 3 cut(s) 130, 356, 519
Sfr274I CTCGAG 1 cut(s) 392
Sfr303I CCGCGG 1 cut(s) 357
SgrBI CCGCGG 1 cut(s) 357
SinI GGWCC 1 cut(s) 160
SlaI CTCGAG 1 cut(s) 392
SmiMI CAYNNNNRTG 2 cut(s) 17, 56
SmlI CTYRAG 1 cut(s) 392
SmoI CTYRAG 1 cut(s) 392
SsiI CCGC 4 cut(s) 65, 231, 354, 356
SspMI CTAG 2 cut(s) 221, 261
StyI CCWWGG 1 cut(s) 144
TaqI TCGA 2 cut(s) 393, 438
TatI WGTACW 1 cut(s) 3
Tru1I TTAA 3 cut(s) 434, 452, 541
Tru9I TTAA 3 cut(s) 434, 452, 541
TscAI CASTG 2 cut(s) 122, 170
TseI GCWGC 3 cut(s) 120, 181, 428
TspDTI ATGAA 3 cut(s) 222, 347, 398
TspRI CASTG 2 cut(s) 122, 170
VneI GTGCAC 1 cut(s) 372
VpaK11BI GGWCC 1 cut(s) 160
XceI RCATGY 1 cut(s) 239
XhoI CTCGAG 1 cut(s) 392
XmiI GTMKAC 1 cut(s) 240
XspI CTAG 2 cut(s) 221, 261
Zsp2I ATGCAT 1 cut(s) 349
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.