RLG00000028503

Protein of unknown function (DUF1442)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0015006
Physical Location & Seq
Reverse (-)
23669518 .. 23670283
766 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000028503

Sequence Viewer

Length: 651 bp
ATGAAGCTCATTTGGTCCCCAGAAACAGCTTCTAAAGCTTACCTAGACACTGTCAAATCATGTGAGAAATTTAGAGAATCTGGTGTTGCCGAGCTGCTCTCTGCGATGGCCGCCGGCTGGAACGCGAAGCTGATCGTCGAGGCGTGGTCGCACGGCGATCCGATCGCCACCAGCCTCGGCCTGGCCACAGCTGCCCGCCACACGTGCGGACGGCATGTGTGCATAGTCCCGGACGAACGTTCAAGGATGGAGTACTTAAAGGCCATGCGTAACGCACCGATACAGCCCGAGGTGGTGGTCGGGGAGGCCGAGGCGGCTACGACAGGAGTTGATTTCTTGGTGGTTGACTGCAGCCGGAGGGAGTTCGCTAGGGTTTTAAGGAGAGCCAAGGTGAGCCCTAGAGGGGCGGTTTTTGCATGCAAGAATGCTTGGCAGAGAAACGTTTCGGGGTTCAGATGGCATGGTGTGGTGGAGAGGGGGACGCGTGTCGTGAGGTCGGTGTTTTTGCCGGTGGGAAAAGGGTTGGATATTGCCCATATAGGGTACGGCGGCGGAACTGTGGGGTCCATAGGCACAATTAGGAAGGGTCCTGGCCGTTGGATCAAGCATATTGACCACCGGTCCGGCGAGGAGCACTTGTTCCGGGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1442

Protein Analysis

217

Amino Acids

23.73

Weight (kDa)

9.71

Isoelectric Point (pI)

41.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1442 PF07279 1 - 215 7.1e-95 Protein of unknown function (DUF1442)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015006)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G45360 AT3G60780
fragaria_vesca FvH4_7g11620
malus_domestica MD07G1120900.v1.1
prunus_persica Prupe.2G144100_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0350051
rosa_laevigata RLG00000028503
rosa_multiflora Rmu_sc0003674.1_g000019
rosa_roxburghii Rroxscaffold_4G00305080
rosa_rugosa Rorug01G0208300
rosa_samantha Rh1AG224600 Rh1BG191900 Rh1CG209300 Rh1DG220400
rosa_wichuraiana Rw1G019190 Rw1G019310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 125, 484
AciI CCGC 7 cut(s) 111, 196, 207, 314, 407, 549, 552
AclI AACGTT 2 cut(s) 238, 441
AclWI GGATC 2 cut(s) 152, 608
AcoI YGGCCR 3 cut(s) 108, 183, 592
AcsI RAATTY 1 cut(s) 68
AcvI CACGTG 1 cut(s) 204
AfaI GTAC 2 cut(s) 254, 545
AfiI CCNNNNNNNGG 4 cut(s) 117, 181, 403, 540
AflIII ACRYGT 2 cut(s) 201, 482
AgeI ACCGGT 1 cut(s) 618
AgsI TTSAA 1 cut(s) 243
AhdI GACNNNNNGTC 1 cut(s) 619
AjnI CCWGG 2 cut(s) 180, 589
AloI GAACNNNNNNTCC 1 cut(s) 623
AluBI AGCT 6 cut(s) 7, 29, 38, 94, 130, 191
AluI AGCT 6 cut(s) 7, 29, 38, 94, 130, 191
Alw21I GWGCWC 1 cut(s) 636
AlwI GGATC 2 cut(s) 152, 608
Ama87I CYCGRG 1 cut(s) 287
AoxI GGCC 6 cut(s) 108, 178, 183, 261, 306, 592
ApeKI GCWGC 3 cut(s) 94, 191, 351
ApoI RAATTY 1 cut(s) 68
AsiGI ACCGGT 1 cut(s) 618
Asp700I GAANNNNTTC 1 cut(s) 442
AspS9I GGNCC 4 cut(s) 15, 564, 587, 621
AsuC2I CCSGG 2 cut(s) 230, 644
AsuHPI GGTGA 1 cut(s) 403
AvaI CYCGRG 1 cut(s) 287
AvaII GGWCC 4 cut(s) 15, 564, 587, 621
BalI TGGCCA 1 cut(s) 185
BanII GRGCYC 1 cut(s) 398
BbrPI CACGTG 1 cut(s) 204
Bbv12I GWGCWC 1 cut(s) 636
BbvI GCAGC 3 cut(s) 81, 178, 363
BccI CCATC 3 cut(s) 100, 241, 450
BceAI ACGGC 4 cut(s) 169, 227, 562, 579
BciT130I CCWGG 2 cut(s) 182, 591
BcnI CCSGG 2 cut(s) 230, 644
BfaI CTAG 3 cut(s) 44, 369, 399
BfmI CTRYAG 1 cut(s) 349
BglI GCCNNNNNGGC 1 cut(s) 314
BisI GCNGC 6 cut(s) 95, 111, 192, 315, 352, 550
BlsI GCNGC 6 cut(s) 96, 112, 193, 316, 353, 551
BmcAI AGTACT 1 cut(s) 254
Bme1390I CCNGG 4 cut(s) 182, 230, 591, 644
Bme18I GGWCC 4 cut(s) 15, 564, 587, 621
BmeRI GACNNNNNGTC 1 cut(s) 619
BmeT110I CYCGRG 1 cut(s) 287
BmgT120I GGNCC 4 cut(s) 15, 564, 587, 621
BmiI GGNNCC 3 cut(s) 17, 565, 588
BmrFI CCNGG 4 cut(s) 182, 230, 591, 644
BoxI GACNNNNGTC 1 cut(s) 485
BplI GAGNNNNNCTC 2 cut(s) 83, 115
BpuMI CCSGG 2 cut(s) 230, 644
BsaAI YACGTR 1 cut(s) 204
BsaJI CCNNGG 4 cut(s) 175, 288, 309, 387
BsaWI WCCGGW 1 cut(s) 618
BsaXI ACNNNNNCTCC 1 cut(s) 623
Bsc4I CCNNNNNNNGG 4 cut(s) 117, 181, 403, 540
Bse118I RCCGGY 3 cut(s) 113, 508, 618
BseBI CCWGG 2 cut(s) 182, 591
BseDI CCNNGG 4 cut(s) 175, 288, 309, 387
BseGI GGATG 1 cut(s) 252
BseLI CCNNNNNNNGG 4 cut(s) 117, 181, 403, 540
BseRI GAGGAG 1 cut(s) 644
BseXI GCAGC 3 cut(s) 81, 178, 363
Bsh1236I CGCG 2 cut(s) 125, 484
Bsh1285I CGRYCG 1 cut(s) 165
BshFI GGCC 6 cut(s) 110, 180, 185, 263, 308, 594
BshTI ACCGGT 1 cut(s) 618
BsiEI CGRYCG 1 cut(s) 165
BsiHKAI GWGCWC 1 cut(s) 636
BsiHKCI CYCGRG 1 cut(s) 287
BsiSI CCGG 7 cut(s) 114, 230, 355, 509, 619, 624, 643
BslFI GGGAC 2 cut(s) 212, 493
BslI CCNNNNNNNGG 4 cut(s) 117, 181, 403, 540
BsmFI GGGAC 2 cut(s) 212, 493
BsmI GAATGC 1 cut(s) 430
BsnI GGCC 6 cut(s) 110, 180, 185, 263, 308, 594
BsoBI CYCGRG 1 cut(s) 287
Bsp1286I GDGCHC 2 cut(s) 398, 636
Bsp143I GATC 4 cut(s) 132, 157, 162, 600
BspACI CCGC 7 cut(s) 111, 196, 207, 314, 407, 549, 552
BspANI GGCC 6 cut(s) 110, 180, 185, 263, 308, 594
BspFNI CGCG 2 cut(s) 125, 484
BspLI GGNNCC 3 cut(s) 17, 565, 588
BspMAI CTGCAG 1 cut(s) 353
BspPI GGATC 2 cut(s) 152, 608
BsrFI RCCGGY 3 cut(s) 113, 508, 618
BssAI RCCGGY 3 cut(s) 113, 508, 618
BssECI CCNNGG 4 cut(s) 175, 288, 309, 387
BssMI GATC 4 cut(s) 132, 157, 162, 600
BssT1I CCWWGG 1 cut(s) 387
Bst2UI CCWGG 2 cut(s) 182, 591
Bst4CI ACNGT 2 cut(s) 52, 559
BstBAI YACGTR 1 cut(s) 204
BstC8I GCNNGC 3 cut(s) 115, 196, 418
BstF5I GGATG 1 cut(s) 252
BstFNI CGCG 2 cut(s) 125, 484
BstKTI GATC 4 cut(s) 135, 160, 165, 603
BstMBI GATC 4 cut(s) 132, 157, 162, 600
BstMCI CGRYCG 1 cut(s) 165
BstMWI GCNNNNNNNGC 6 cut(s) 35, 110, 191, 204, 314, 413
BstNI CCWGG 2 cut(s) 182, 591
BstNSI RCATGY 2 cut(s) 218, 420
BstPAI GACNNNNGTC 1 cut(s) 485
BstSCI CCNGG 4 cut(s) 180, 228, 589, 642
BstSFI CTRYAG 1 cut(s) 349
BstUI CGCG 2 cut(s) 125, 484
BstV1I GCAGC 3 cut(s) 81, 178, 363
BsuRI GGCC 6 cut(s) 110, 180, 185, 263, 308, 594
BtgZI GCGATG 1 cut(s) 119
BtsCI GGATG 1 cut(s) 252
BtsIMutI CAGTG 1 cut(s) 48
Cac8I GCNNGC 3 cut(s) 115, 196, 418
Cfr10I RCCGGY 3 cut(s) 113, 508, 618
Cfr13I GGNCC 4 cut(s) 15, 564, 587, 621
CpoI CGGWCCG 1 cut(s) 621
CseI GACGC 1 cut(s) 490
Csp6I GTAC 2 cut(s) 253, 544
CspAI ACCGGT 1 cut(s) 618
CspI CGGWCCG 1 cut(s) 621
CviAII CATG 5 cut(s) 60, 215, 265, 417, 461
CviQI GTAC 2 cut(s) 253, 544
DpnI GATC 4 cut(s) 134, 159, 164, 602
DpnII GATC 4 cut(s) 132, 157, 162, 600
DriI GACNNNNNGTC 1 cut(s) 619
EaeI YGGCCR 3 cut(s) 108, 183, 592
Eam1105I GACNNNNNGTC 1 cut(s) 619
EciI GGCGGA 1 cut(s) 567
Eco130I CCWWGG 1 cut(s) 387
Eco24I GRGCYC 1 cut(s) 398
Eco47I GGWCC 4 cut(s) 15, 564, 587, 621
Eco72I CACGTG 1 cut(s) 204
Eco88I CYCGRG 1 cut(s) 287
EcoO109I RGGNCCY 1 cut(s) 587
EcoRII CCWGG 2 cut(s) 180, 589
EcoT14I CCWWGG 1 cut(s) 387
EcoT38I GRGCYC 1 cut(s) 398
ErhI CCWWGG 1 cut(s) 387
FaeI CATG 5 cut(s) 63, 218, 268, 420, 464
FaqI GGGAC 2 cut(s) 212, 493
FatI CATG 5 cut(s) 59, 214, 264, 416, 460
FauI CCCGC 1 cut(s) 203
Fnu4HI GCNGC 6 cut(s) 95, 111, 192, 315, 352, 550
FokI GGATG 1 cut(s) 259
FriOI GRGCYC 1 cut(s) 398
Fsp4HI GCNGC 6 cut(s) 95, 111, 192, 315, 352, 550
FspBI CTAG 3 cut(s) 44, 369, 399
GluI GCNGC 6 cut(s) 95, 111, 192, 315, 352, 550
HaeIII GGCC 6 cut(s) 110, 180, 185, 263, 308, 594
HapII CCGG 7 cut(s) 114, 230, 355, 509, 619, 624, 643
HgaI GACGC 1 cut(s) 490
Hin1II CATG 5 cut(s) 63, 218, 268, 420, 464
HincII GTYRAC 1 cut(s) 346
HindII GTYRAC 1 cut(s) 346
HindIII AAGCTT 1 cut(s) 36
HinfI GANTC 1 cut(s) 77
HpaII CCGG 7 cut(s) 114, 230, 355, 509, 619, 624, 643
HphI GGTGA 1 cut(s) 403
Hpy166II GTNNAC 1 cut(s) 346
Hpy188I TCNGA 2 cut(s) 162, 455
Hpy188III TCNNGA 1 cut(s) 490
Hpy8I GTNNAC 1 cut(s) 346
Hpy99I CGWCG 1 cut(s) 140
HpyAV CCTTC 1 cut(s) 577
HpyCH4III ACNGT 2 cut(s) 52, 559
HpyCH4IV ACGT 3 cut(s) 203, 238, 441
HpyCH4V TGCA 4 cut(s) 222, 351, 416, 420
HpyF10VI GCNNNNNNNGC 6 cut(s) 35, 110, 191, 204, 314, 413
HpySE526I ACGT 3 cut(s) 203, 238, 441
Hsp92II CATG 5 cut(s) 63, 218, 268, 420, 464
KroI GCCGGC 1 cut(s) 113
KroNI GCCGGC 1 cut(s) 115
Kzo9I GATC 4 cut(s) 132, 157, 162, 600
LmnI GCTCC 1 cut(s) 631
Lsp1109I GCAGC 3 cut(s) 81, 178, 363
MaeI CTAG 3 cut(s) 44, 369, 399
MaeII ACGT 3 cut(s) 203, 238, 441
MaeIII GTNAC 1 cut(s) 269
MalI GATC 4 cut(s) 134, 159, 164, 602
MboI GATC 4 cut(s) 132, 157, 162, 600
MhlI GDGCHC 2 cut(s) 398, 636
MlsI TGGCCA 1 cut(s) 185
MluCI AATT 2 cut(s) 68, 576
MluI ACGCGT 1 cut(s) 482
MluNI TGGCCA 1 cut(s) 185
MmeI TCCRAC 2 cut(s) 504, 578
Mox20I TGGCCA 1 cut(s) 185
MroNI GCCGGC 1 cut(s) 113
MroXI GAANNNNTTC 1 cut(s) 442
MscI TGGCCA 1 cut(s) 185
MseI TTAA 2 cut(s) 257, 377
Msp20I TGGCCA 1 cut(s) 185
MspA1I CMGCKG 1 cut(s) 191
MspI CCGG 7 cut(s) 114, 230, 355, 509, 619, 624, 643
MspR9I CCNGG 4 cut(s) 182, 230, 591, 644
Mva1269I GAATGC 1 cut(s) 430
MvaI CCWGG 2 cut(s) 182, 591
MvnI CGCG 2 cut(s) 125, 484
MwoI GCNNNNNNNGC 6 cut(s) 35, 110, 191, 204, 314, 413
NaeI GCCGGC 1 cut(s) 115
NciI CCSGG 2 cut(s) 230, 644
NdeII GATC 4 cut(s) 132, 157, 162, 600
NgoMIV GCCGGC 1 cut(s) 113
NlaIII CATG 5 cut(s) 63, 218, 268, 420, 464
NlaIV GGNNCC 3 cut(s) 17, 565, 588
NmeAIII GCCGAG 3 cut(s) 115, 156, 334
NspI RCATGY 2 cut(s) 218, 420
PaeI GCATGC 1 cut(s) 420
PcsI WCGNNNNNNNCGW 1 cut(s) 306
PctI GAATGC 1 cut(s) 430
PdiI GCCGGC 1 cut(s) 115
PdmI GAANNNNTTC 1 cut(s) 442
PfeI GAWTC 1 cut(s) 77
PflFI GACNNNGTC 1 cut(s) 50
PfoI TCCNGGA 2 cut(s) 228, 642
PinAI ACCGGT 1 cut(s) 618
PkrI GCNGC 6 cut(s) 96, 112, 193, 316, 353, 551
Ple19I CGATCG 1 cut(s) 165
PmaCI CACGTG 1 cut(s) 204
PmlI CACGTG 1 cut(s) 204
Ppu21I YACGTR 1 cut(s) 204
PpuMI RGGWCCY 1 cut(s) 587
PshAI GACNNNNGTC 1 cut(s) 485
Psp1406I AACGTT 2 cut(s) 238, 441
Psp5II RGGWCCY 1 cut(s) 587
Psp6I CCWGG 2 cut(s) 180, 589
PspCI CACGTG 1 cut(s) 204
PspGI CCWGG 2 cut(s) 180, 589
PspN4I GGNNCC 3 cut(s) 17, 565, 588
PspPI GGNCC 4 cut(s) 15, 564, 587, 621
PspPPI RGGWCCY 1 cut(s) 587
PstI CTGCAG 1 cut(s) 353
PsyI GACNNNGTC 1 cut(s) 50
PvuI CGATCG 1 cut(s) 165
PvuII CAGCTG 1 cut(s) 191
RsaI GTAC 2 cut(s) 254, 545
RsaNI GTAC 2 cut(s) 253, 544
Rsr2I CGGWCCG 1 cut(s) 621
RsrII CGGWCCG 1 cut(s) 621
SaqAI TTAA 2 cut(s) 257, 377
SatI GCNGC 6 cut(s) 95, 111, 192, 315, 352, 550
Sau3AI GATC 4 cut(s) 132, 157, 162, 600
Sau96I GGNCC 4 cut(s) 15, 564, 587, 621
ScaI AGTACT 1 cut(s) 254
ScrFI CCNGG 4 cut(s) 182, 230, 591, 644
SduI GDGCHC 2 cut(s) 398, 636
SfcI CTRYAG 1 cut(s) 349
SinI GGWCC 4 cut(s) 15, 564, 587, 621
SphI GCATGC 1 cut(s) 420
Sse9I AATT 2 cut(s) 68, 576
SsiI CCGC 7 cut(s) 111, 196, 207, 314, 407, 549, 552
SspMI CTAG 3 cut(s) 44, 369, 399
StyD4I CCNGG 4 cut(s) 180, 228, 589, 642
StyI CCWWGG 1 cut(s) 387
TaaI ACNGT 2 cut(s) 52, 559
TaiI ACGT 3 cut(s) 206, 241, 444
TaqI TCGA 1 cut(s) 138
TasI AATT 2 cut(s) 68, 576
TatI WGTACW 1 cut(s) 252
TauI GCSGC 3 cut(s) 113, 317, 552
TfiI GAWTC 1 cut(s) 77
Tru1I TTAA 2 cut(s) 257, 377
Tru9I TTAA 2 cut(s) 257, 377
TscAI CASTG 1 cut(s) 55
TseI GCWGC 3 cut(s) 94, 191, 351
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 1 cut(s) 55
Tth111I GACNNNGTC 1 cut(s) 50
VpaK11BI GGWCC 4 cut(s) 15, 564, 587, 621
XapI RAATTY 1 cut(s) 68
XceI RCATGY 2 cut(s) 218, 420
XcmI CCANNNNNNNNNTGG 1 cut(s) 178
XmnI GAANNNNTTC 1 cut(s) 442
XspI CTAG 3 cut(s) 44, 369, 399
ZrmI AGTACT 1 cut(s) 254
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.