Rmu_sc0003674.1_g000019

Protein of unknown function (DUF1442)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003674.1
OG0015006
Physical Location & Seq
Forward (+)
106878 .. 107634
757 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003674.1_g000019.1.cds

Sequence Viewer

Length: 642 bp
atgaagctcatttggtccccagaaacagcttctaaagcttacctagacactgtcaaatcatgtgagaaatttagagaatctggtgttgccgagctgctctctgcgatggcggccggctggaacgcgaagctgatcgttgaggcgtggtcctacggcgatccgatcgccaccagcctaggcctggccacggccgcccgccacacgtgcggacggcacgtgtgcatagtcccggatgaacgttcgaggatggagtacttaaaggccatgcgtaacgcaccaatacagcccgaggtggtggtcggggaggccgaggcggcgacgacaggagttgatttcttggtggttgactgcagccggagggagttcgctagggttttaaggagagccaaggtgagccctagaggggcggttttcgcatgcaagaatgctagaaacgtttcggggttcagatggcatggtgtggtggagagggggacgcgtgtggtgaggtcggtgtttttgccggtgggaaaagggttggatattgcccatatagggtacggcggtggaacggggtcgataggtacaattaggaagggtcctggccgttggatcaagcatattgaccaccggtccggcgaggagcacttgttccgggagtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1442

Protein Analysis

213

Amino Acids

23.34

Weight (kDa)

9.67

Isoelectric Point (pI)

41.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015006)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G45360 AT3G60780
fragaria_vesca FvH4_7g11620
malus_domestica MD07G1120900.v1.1
prunus_persica Prupe.2G144100_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0350051
rosa_laevigata RLG00000028503
rosa_multiflora Rmu_sc0003674.1_g000019
rosa_roxburghii Rroxscaffold_4G00305080
rosa_rugosa Rorug01G0208300
rosa_samantha Rh1AG224600 Rh1BG191900 Rh1CG209300 Rh1DG220400
rosa_wichuraiana Rw1G019190 Rw1G019310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 125, 478
AciI CCGC 7 cut(s) 110, 192, 196, 207, 314, 407, 543
AclI AACGTT 2 cut(s) 238, 435
AclWI GGATC 2 cut(s) 152, 599
AcoI YGGCCR 4 cut(s) 111, 183, 189, 583
AcsI RAATTY 1 cut(s) 68
AcvI CACGTG 2 cut(s) 204, 217
AfaI GTAC 3 cut(s) 254, 539, 565
AfiI CCNNNNNNNGG 4 cut(s) 181, 187, 403, 534
AflIII ACRYGT 3 cut(s) 201, 216, 476
AgeI ACCGGT 1 cut(s) 609
AhdI GACNNNNNGTC 1 cut(s) 610
AjnI CCWGG 2 cut(s) 180, 580
AloI GAACNNNNNNTCC 1 cut(s) 614
AluBI AGCT 5 cut(s) 7, 29, 38, 94, 130
AluI AGCT 5 cut(s) 7, 29, 38, 94, 130
Alw21I GWGCWC 1 cut(s) 627
AlwI GGATC 2 cut(s) 152, 599
Ama87I CYCGRG 1 cut(s) 287
AoxI GGCC 7 cut(s) 111, 178, 183, 189, 261, 306, 583
ApeKI GCWGC 2 cut(s) 94, 351
ApoI RAATTY 1 cut(s) 68
AsiGI ACCGGT 1 cut(s) 609
Asp700I GAANNNNTTC 1 cut(s) 436
AspA2I CCTAGG 1 cut(s) 175
AspS9I GGNCC 4 cut(s) 15, 147, 578, 612
AsuC2I CCSGG 2 cut(s) 230, 635
AsuHPI GGTGA 2 cut(s) 403, 496
AvaI CYCGRG 1 cut(s) 287
AvaII GGWCC 4 cut(s) 15, 147, 578, 612
AvrII CCTAGG 1 cut(s) 175
BaeI ACNNNNGTAYC 2 cut(s) 529, 562
BalI TGGCCA 1 cut(s) 185
BanII GRGCYC 1 cut(s) 398
BbrPI CACGTG 2 cut(s) 204, 217
Bbv12I GWGCWC 1 cut(s) 627
BbvI GCAGC 2 cut(s) 81, 363
BccI CCATC 3 cut(s) 100, 241, 444
BceAI ACGGC 5 cut(s) 169, 204, 227, 556, 570
BciT130I CCWGG 2 cut(s) 182, 582
BcnI CCSGG 2 cut(s) 230, 635
BfaI CTAG 5 cut(s) 44, 176, 369, 399, 429
BfmI CTRYAG 1 cut(s) 349
BglI GCCNNNNNGGC 1 cut(s) 314
BisI GCNGC 5 cut(s) 95, 111, 192, 315, 352
BlnI CCTAGG 1 cut(s) 175
BlsI GCNGC 5 cut(s) 96, 112, 193, 316, 353
BmcAI AGTACT 1 cut(s) 254
Bme1390I CCNGG 4 cut(s) 182, 230, 582, 635
Bme18I GGWCC 4 cut(s) 15, 147, 578, 612
BmeRI GACNNNNNGTC 1 cut(s) 610
BmeT110I CYCGRG 1 cut(s) 287
BmgT120I GGNCC 4 cut(s) 15, 147, 578, 612
BmiI GGNNCC 2 cut(s) 17, 579
BmrFI CCNGG 4 cut(s) 182, 230, 582, 635
BplI GAGNNNNNCTC 2 cut(s) 83, 115
BpuMI CCSGG 2 cut(s) 230, 635
BsaAI YACGTR 2 cut(s) 204, 217
BsaJI CCNNGG 5 cut(s) 175, 186, 288, 309, 387
BsaWI WCCGGW 1 cut(s) 609
BsaXI ACNNNNNCTCC 1 cut(s) 614
Bsc4I CCNNNNNNNGG 4 cut(s) 181, 187, 403, 534
Bse118I RCCGGY 3 cut(s) 113, 502, 609
BseBI CCWGG 2 cut(s) 182, 582
BseDI CCNNGG 5 cut(s) 175, 186, 288, 309, 387
BseGI GGATG 2 cut(s) 238, 252
BseLI CCNNNNNNNGG 4 cut(s) 181, 187, 403, 534
BseRI GAGGAG 1 cut(s) 635
BseX3I CGGCCG 2 cut(s) 111, 189
BseXI GCAGC 2 cut(s) 81, 363
Bsh1236I CGCG 2 cut(s) 125, 478
Bsh1285I CGRYCG 3 cut(s) 114, 165, 192
BshFI GGCC 7 cut(s) 113, 180, 185, 191, 263, 308, 585
BshTI ACCGGT 1 cut(s) 609
BsiEI CGRYCG 3 cut(s) 114, 165, 192
BsiHKAI GWGCWC 1 cut(s) 627
BsiHKCI CYCGRG 1 cut(s) 287
BsiSI CCGG 7 cut(s) 114, 230, 355, 503, 610, 615, 634
BslFI GGGAC 2 cut(s) 212, 487
BslI CCNNNNNNNGG 4 cut(s) 181, 187, 403, 534
BsmFI GGGAC 2 cut(s) 212, 487
BsmI GAATGC 1 cut(s) 430
BsnI GGCC 7 cut(s) 113, 180, 185, 191, 263, 308, 585
BsoBI CYCGRG 1 cut(s) 287
Bsp1286I GDGCHC 2 cut(s) 398, 627
Bsp143I GATC 4 cut(s) 132, 157, 162, 591
BspACI CCGC 7 cut(s) 110, 192, 196, 207, 314, 407, 543
BspANI GGCC 7 cut(s) 113, 180, 185, 191, 263, 308, 585
BspFNI CGCG 2 cut(s) 125, 478
BspLI GGNNCC 2 cut(s) 17, 579
BspMAI CTGCAG 1 cut(s) 353
BspPI GGATC 2 cut(s) 152, 599
BsrFI RCCGGY 3 cut(s) 113, 502, 609
BssAI RCCGGY 3 cut(s) 113, 502, 609
BssECI CCNNGG 5 cut(s) 175, 186, 288, 309, 387
BssMI GATC 4 cut(s) 132, 157, 162, 591
BssT1I CCWWGG 2 cut(s) 175, 387
Bst2UI CCWGG 2 cut(s) 182, 582
Bst4CI ACNGT 1 cut(s) 52
BstBAI YACGTR 2 cut(s) 204, 217
BstC8I GCNNGC 3 cut(s) 115, 196, 418
BstDSI CCRYGG 1 cut(s) 186
BstF5I GGATG 2 cut(s) 238, 252
BstFNI CGCG 2 cut(s) 125, 478
BstKTI GATC 4 cut(s) 135, 160, 165, 594
BstMBI GATC 4 cut(s) 132, 157, 162, 591
BstMCI CGRYCG 3 cut(s) 114, 165, 192
BstMWI GCNNNNNNNGC 6 cut(s) 35, 110, 191, 204, 314, 413
BstNI CCWGG 2 cut(s) 182, 582
BstNSI RCATGY 1 cut(s) 420
BstSCI CCNGG 4 cut(s) 180, 228, 580, 633
BstSFI CTRYAG 1 cut(s) 349
BstUI CGCG 2 cut(s) 125, 478
BstV1I GCAGC 2 cut(s) 81, 363
BstZI CGGCCG 2 cut(s) 111, 189
BsuRI GGCC 7 cut(s) 113, 180, 185, 191, 263, 308, 585
BtgI CCRYGG 1 cut(s) 186
BtgZI GCGATG 1 cut(s) 119
BtsCI GGATG 2 cut(s) 238, 252
BtsIMutI CAGTG 1 cut(s) 48
Cac8I GCNNGC 3 cut(s) 115, 196, 418
Cfr10I RCCGGY 3 cut(s) 113, 502, 609
Cfr13I GGNCC 4 cut(s) 15, 147, 578, 612
CpoI CGGWCCG 1 cut(s) 612
CseI GACGC 1 cut(s) 484
Csp6I GTAC 3 cut(s) 253, 538, 564
CspAI ACCGGT 1 cut(s) 609
CspI CGGWCCG 1 cut(s) 612
CviAII CATG 4 cut(s) 60, 265, 417, 455
CviQI GTAC 3 cut(s) 253, 538, 564
DpnI GATC 4 cut(s) 134, 159, 164, 593
DpnII GATC 4 cut(s) 132, 157, 162, 591
DriI GACNNNNNGTC 1 cut(s) 610
EaeI YGGCCR 4 cut(s) 111, 183, 189, 583
EagI CGGCCG 2 cut(s) 111, 189
Eam1105I GACNNNNNGTC 1 cut(s) 610
EclXI CGGCCG 2 cut(s) 111, 189
Eco130I CCWWGG 2 cut(s) 175, 387
Eco147I AGGCCT 1 cut(s) 180
Eco24I GRGCYC 1 cut(s) 398
Eco47I GGWCC 4 cut(s) 15, 147, 578, 612
Eco52I CGGCCG 2 cut(s) 111, 189
Eco72I CACGTG 2 cut(s) 204, 217
Eco88I CYCGRG 1 cut(s) 287
EcoO109I RGGNCCY 1 cut(s) 578
EcoRII CCWGG 2 cut(s) 180, 580
EcoT14I CCWWGG 2 cut(s) 175, 387
EcoT38I GRGCYC 1 cut(s) 398
ErhI CCWWGG 2 cut(s) 175, 387
FaeI CATG 4 cut(s) 63, 268, 420, 458
FaiI YATR 8 cut(s) 61, 224, 266, 418, 456, 531, 533, 600
FaqI GGGAC 2 cut(s) 212, 487
FatI CATG 4 cut(s) 59, 264, 416, 454
FauI CCCGC 1 cut(s) 203
Fnu4HI GCNGC 5 cut(s) 95, 111, 192, 315, 352
FokI GGATG 2 cut(s) 245, 259
FriOI GRGCYC 1 cut(s) 398
Fsp4HI GCNGC 5 cut(s) 95, 111, 192, 315, 352
FspBI CTAG 5 cut(s) 44, 176, 369, 399, 429
GluI GCNGC 5 cut(s) 95, 111, 192, 315, 352
HaeIII GGCC 7 cut(s) 113, 180, 185, 191, 263, 308, 585
HapII CCGG 7 cut(s) 114, 230, 355, 503, 610, 615, 634
HgaI GACGC 1 cut(s) 484
Hin1II CATG 4 cut(s) 63, 268, 420, 458
HincII GTYRAC 1 cut(s) 346
HindII GTYRAC 1 cut(s) 346
HindIII AAGCTT 1 cut(s) 36
HinfI GANTC 1 cut(s) 77
HpaII CCGG 7 cut(s) 114, 230, 355, 503, 610, 615, 634
HphI GGTGA 2 cut(s) 403, 496
Hpy166II GTNNAC 1 cut(s) 346
Hpy188I TCNGA 2 cut(s) 162, 449
Hpy8I GTNNAC 1 cut(s) 346
Hpy99I CGWCG 1 cut(s) 322
HpyAV CCTTC 1 cut(s) 568
HpyCH4III ACNGT 1 cut(s) 52
HpyCH4IV ACGT 4 cut(s) 203, 216, 238, 435
HpyCH4V TGCA 3 cut(s) 222, 351, 420
HpyF10VI GCNNNNNNNGC 6 cut(s) 35, 110, 191, 204, 314, 413
HpySE526I ACGT 4 cut(s) 203, 216, 238, 435
Hsp92II CATG 4 cut(s) 63, 268, 420, 458
KroI GCCGGC 1 cut(s) 113
KroNI GCCGGC 1 cut(s) 115
Kzo9I GATC 4 cut(s) 132, 157, 162, 591
LmnI GCTCC 1 cut(s) 622
Lsp1109I GCAGC 2 cut(s) 81, 363
MaeI CTAG 5 cut(s) 44, 176, 369, 399, 429
MaeII ACGT 4 cut(s) 203, 216, 238, 435
MaeIII GTNAC 1 cut(s) 269
MalI GATC 4 cut(s) 134, 159, 164, 593
MboI GATC 4 cut(s) 132, 157, 162, 591
MhlI GDGCHC 2 cut(s) 398, 627
MlsI TGGCCA 1 cut(s) 185
MluCI AATT 2 cut(s) 68, 567
MluI ACGCGT 1 cut(s) 476
MluNI TGGCCA 1 cut(s) 185
MmeI TCCRAC 2 cut(s) 498, 569
Mox20I TGGCCA 1 cut(s) 185
MroNI GCCGGC 1 cut(s) 113
MroXI GAANNNNTTC 1 cut(s) 436
MscI TGGCCA 1 cut(s) 185
MseI TTAA 2 cut(s) 257, 377
Msp20I TGGCCA 1 cut(s) 185
MspI CCGG 7 cut(s) 114, 230, 355, 503, 610, 615, 634
MspR9I CCNGG 4 cut(s) 182, 230, 582, 635
Mva1269I GAATGC 1 cut(s) 430
MvaI CCWGG 2 cut(s) 182, 582
MvnI CGCG 2 cut(s) 125, 478
MwoI GCNNNNNNNGC 6 cut(s) 35, 110, 191, 204, 314, 413
NaeI GCCGGC 1 cut(s) 115
NciI CCSGG 2 cut(s) 230, 635
NdeII GATC 4 cut(s) 132, 157, 162, 591
NgoMIV GCCGGC 1 cut(s) 113
NlaIII CATG 4 cut(s) 63, 268, 420, 458
NlaIV GGNNCC 2 cut(s) 17, 579
NmeAIII GCCGAG 2 cut(s) 115, 334
NspI RCATGY 1 cut(s) 420
PaeI GCATGC 1 cut(s) 420
PceI AGGCCT 1 cut(s) 180
PcsI WCGNNNNNNNCGW 1 cut(s) 306
PctI GAATGC 1 cut(s) 430
PdiI GCCGGC 1 cut(s) 115
PdmI GAANNNNTTC 1 cut(s) 436
PfeI GAWTC 1 cut(s) 77
PflFI GACNNNGTC 1 cut(s) 50
PfoI TCCNGGA 2 cut(s) 228, 633
PinAI ACCGGT 1 cut(s) 609
PkrI GCNGC 5 cut(s) 96, 112, 193, 316, 353
Ple19I CGATCG 1 cut(s) 165
PmaCI CACGTG 2 cut(s) 204, 217
PmlI CACGTG 2 cut(s) 204, 217
Ppu21I YACGTR 2 cut(s) 204, 217
PpuMI RGGWCCY 1 cut(s) 578
Psp1406I AACGTT 2 cut(s) 238, 435
Psp5II RGGWCCY 1 cut(s) 578
Psp6I CCWGG 2 cut(s) 180, 580
PspCI CACGTG 2 cut(s) 204, 217
PspGI CCWGG 2 cut(s) 180, 580
PspN4I GGNNCC 2 cut(s) 17, 579
PspPI GGNCC 4 cut(s) 15, 147, 578, 612
PspPPI RGGWCCY 1 cut(s) 578
PstI CTGCAG 1 cut(s) 353
PsyI GACNNNGTC 1 cut(s) 50
PvuI CGATCG 1 cut(s) 165
RsaI GTAC 3 cut(s) 254, 539, 565
RsaNI GTAC 3 cut(s) 253, 538, 564
Rsr2I CGGWCCG 1 cut(s) 612
RsrII CGGWCCG 1 cut(s) 612
SaqAI TTAA 2 cut(s) 257, 377
SatI GCNGC 5 cut(s) 95, 111, 192, 315, 352
Sau3AI GATC 4 cut(s) 132, 157, 162, 591
Sau96I GGNCC 4 cut(s) 15, 147, 578, 612
ScaI AGTACT 1 cut(s) 254
ScrFI CCNGG 4 cut(s) 182, 230, 582, 635
SduI GDGCHC 2 cut(s) 398, 627
SfcI CTRYAG 1 cut(s) 349
SinI GGWCC 4 cut(s) 15, 147, 578, 612
SphI GCATGC 1 cut(s) 420
Sse9I AATT 2 cut(s) 68, 567
SseBI AGGCCT 1 cut(s) 180
SsiI CCGC 7 cut(s) 110, 192, 196, 207, 314, 407, 543
SspMI CTAG 5 cut(s) 44, 176, 369, 399, 429
StuI AGGCCT 1 cut(s) 180
StyD4I CCNGG 4 cut(s) 180, 228, 580, 633
StyI CCWWGG 2 cut(s) 175, 387
TaaI ACNGT 1 cut(s) 52
TaiI ACGT 4 cut(s) 206, 219, 241, 438
TaqI TCGA 2 cut(s) 242, 557
TasI AATT 2 cut(s) 68, 567
TatI WGTACW 1 cut(s) 252
TauI GCSGC 3 cut(s) 113, 194, 317
TfiI GAWTC 1 cut(s) 77
Tru1I TTAA 2 cut(s) 257, 377
Tru9I TTAA 2 cut(s) 257, 377
TscAI CASTG 1 cut(s) 55
TseI GCWGC 2 cut(s) 94, 351
TspDTI ATGAA 2 cut(s) 17, 249
TspRI CASTG 1 cut(s) 55
Tth111I GACNNNGTC 1 cut(s) 50
VpaK11BI GGWCC 4 cut(s) 15, 147, 578, 612
XapI RAATTY 1 cut(s) 68
XceI RCATGY 1 cut(s) 420
XcmI CCANNNNNNNNNTGG 1 cut(s) 178
XmaJI CCTAGG 1 cut(s) 175
XmnI GAANNNNTTC 1 cut(s) 436
XspI CTAG 5 cut(s) 44, 176, 369, 399, 429
ZrmI AGTACT 1 cut(s) 254
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.