AT2G46150

Late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0014279
Physical Location & Seq
Forward (+)
18961283 .. 18962423
1141 bp
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UTR
Exon/CDS
Intron
AT2G46150.1

Sequence Viewer

Length: 666 bp
ATGGCAGATTCTGAACATGTACGGCCGCTAGCTCCGGCGACCATACTTCCGGTGAGCGATGAATCCGCCTCCAACATCAAGAACACACACCGTAGTAGAAACAGAATCAAATGCTCAATCTGCGTCACTGCAACATCTCTAATTCTAACCACGATCGTGTTGACTTTAGTTTTCACGGTGTTCAGAGTCAAAGACCCGATCATAAAAATGAACGGCGTAATGGTCAACGGCCTAGATTCAGTCACGGGGACTAATCAAGTCCAACTGTTGGGGACAAACATCTCGATGATCGTTGACGTATCGGTCAAGAATCCGAATACGGCGTCGTTTAAGTACTCCAACACCACGACGGATATATACTACAAAGGAACGTTGGTGGGTGAAGCGCATGGGCTACCGGGGAAGGCGAGACCGCATCGGACTTCGAGGATGAACGTGACGGTTGATATTATGCTTGATCGGATATTATCGGATCCGGGTTTGGGTCGAGAAATAAGTAGGTCGGGTCTTGTGAACGTGTGGAGTTACACTAGGGTTGGTGGTAAGGTGAAGATTATGGGGATCGTGAAGAAGCACGTGACCGTTAAGATGAATTGCACGATGGCTGTGAACATTACGGGACAGGCGATTCAAGATGTTGACTGCAAGAAAAAAATCGATCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

221

Amino Acids

24.1

Weight (kDa)

9.78

Isoelectric Point (pI)

23.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LEA_2 PF03168 100 - 200 9.8e-13 Late embryogenesis abundant protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014279)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G46150
fragaria_vesca FvH4_7g15490
malus_domestica MD01G1072100.v1.1 MD07G1130600.v1.1
prunus_persica Prupe.2G178500_v2.0.a1
pyrus_communis pycom01g10140
rosa_chinensis RchiOBHm_Chr1g0357811
rosa_laevigata RLG00000027994
rosa_multiflora Rmu_co8384079.1_g000001 Rmu_sc0011109.1_g000008
rosa_roxburghii Rroxscaffold_4G00298480
rosa_rugosa Rorug01G0258800
rosa_samantha Rh1AG272700 Rh1BG240000 Rh1CG256600 Rh1DG268300
rosa_wichuraiana Rw1G024340

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 302
AccB7I CCANNNNNTGG 1 cut(s) 268
AciI CCGC 3 cut(s) 26, 66, 413
AclI AACGTT 1 cut(s) 371
AclWI GGATC 3 cut(s) 467, 480, 569
AcoI YGGCCR 1 cut(s) 23
AcvI CACGTG 1 cut(s) 577
AcyI GRCGYC 1 cut(s) 323
AfaI GTAC 2 cut(s) 21, 335
AfiI CCNNNNNNNGG 2 cut(s) 268, 482
AflIII ACRYGT 2 cut(s) 16, 516
AgsI TTSAA 1 cut(s) 632
AleI CACNNNNGTG 1 cut(s) 155
AluBI AGCT 1 cut(s) 32
AluI AGCT 1 cut(s) 32
Alw26I GTCTC 1 cut(s) 403
AlwI GGATC 3 cut(s) 467, 480, 569
AlwNI CAGNNNCTG 1 cut(s) 11
AoxI GGCC 2 cut(s) 23, 229
ArsI GACNNNNNNTTYG 2 cut(s) 308, 340
AspLEI GCGC 1 cut(s) 388
AsuC2I CCSGG 2 cut(s) 399, 477
AsuHPI GGTGA 3 cut(s) 64, 392, 559
AsuNHI GCTAGC 1 cut(s) 28
BamHI GGATCC 1 cut(s) 472
BbrPI CACGTG 1 cut(s) 577
BccI CCATC 1 cut(s) 595
BceAI ACGGC 4 cut(s) 38, 229, 244, 336
BcnI CCSGG 2 cut(s) 399, 477
BcoDI GTCTC 1 cut(s) 403
BfaI CTAG 3 cut(s) 29, 233, 531
BisI GCNGC 1 cut(s) 26
BlsI GCNGC 1 cut(s) 27
BmcAI AGTACT 1 cut(s) 335
Bme1390I CCNGG 2 cut(s) 399, 477
BmiI GGNNCC 1 cut(s) 474
BmrFI CCNGG 2 cut(s) 399, 477
BmsI GCATC 1 cut(s) 424
BmtI GCTAGC 1 cut(s) 32
BpuMI CCSGG 2 cut(s) 399, 477
Bsa29I ATCGAT 1 cut(s) 657
BsaAI YACGTR 1 cut(s) 577
BsaHI GRCGYC 1 cut(s) 323
BsaI GGTCTC 1 cut(s) 403
BsaJI CCNNGG 1 cut(s) 398
BsaWI WCCGGW 1 cut(s) 49
Bsc4I CCNNNNNNNGG 2 cut(s) 268, 482
BseCI ATCGAT 1 cut(s) 657
BseDI CCNNGG 1 cut(s) 398
BseGI GGATG 1 cut(s) 435
BseLI CCNNNNNNNGG 2 cut(s) 268, 482
BseX3I CGGCCG 1 cut(s) 23
Bsh1285I CGRYCG 2 cut(s) 26, 156
BshFI GGCC 2 cut(s) 25, 231
BshVI ATCGAT 1 cut(s) 657
BsiEI CGRYCG 2 cut(s) 26, 156
BsiSI CCGG 4 cut(s) 35, 50, 398, 476
BslFI GGGAC 3 cut(s) 262, 286, 633
BslI CCNNNNNNNGG 2 cut(s) 268, 482
BsmAI GTCTC 1 cut(s) 403
BsmFI GGGAC 3 cut(s) 262, 286, 633
BsnI GGCC 2 cut(s) 25, 231
Bso31I GGTCTC 1 cut(s) 403
Bsp143I GATC 7 cut(s) 153, 198, 288, 457, 472, 561, 658
BspACI CCGC 3 cut(s) 26, 66, 413
BspANI GGCC 2 cut(s) 25, 231
BspDI ATCGAT 1 cut(s) 657
BspLI GGNNCC 1 cut(s) 474
BspOI GCTAGC 1 cut(s) 32
BspPI GGATC 3 cut(s) 467, 480, 569
BspTNI GGTCTC 1 cut(s) 403
BssECI CCNNGG 1 cut(s) 398
BssMI GATC 7 cut(s) 153, 198, 288, 457, 472, 561, 658
BssNI GRCGYC 1 cut(s) 323
Bst4CI ACNGT 5 cut(s) 92, 178, 267, 442, 583
BstACI GRCGYC 1 cut(s) 323
BstBAI YACGTR 1 cut(s) 577
BstC8I GCNNGC 1 cut(s) 30
BstF5I GGATG 1 cut(s) 435
BstHHI GCGC 1 cut(s) 388
BstKTI GATC 7 cut(s) 156, 201, 291, 460, 475, 564, 661
BstMAI GTCTC 1 cut(s) 403
BstMBI GATC 7 cut(s) 153, 198, 288, 457, 472, 561, 658
BstMCI CGRYCG 2 cut(s) 26, 156
BstMWI GCNNNNNNNGC 1 cut(s) 120
BstNSI RCATGY 1 cut(s) 20
BstSCI CCNGG 2 cut(s) 397, 475
BstX2I RGATCY 1 cut(s) 472
BstYI RGATCY 1 cut(s) 472
BstZI CGGCCG 1 cut(s) 23
Bsu15I ATCGAT 1 cut(s) 657
BsuRI GGCC 2 cut(s) 25, 231
BsuTUI ATCGAT 1 cut(s) 657
BtgZI GCGATG 1 cut(s) 72
BtsCI GGATG 1 cut(s) 435
BtsI GCAGTG 1 cut(s) 126
BtsIMutI CAGTG 1 cut(s) 126
Cac8I GCNNGC 1 cut(s) 30
CaiI CAGNNNCTG 1 cut(s) 11
CfoI GCGC 1 cut(s) 388
ClaI ATCGAT 1 cut(s) 657
CseI GACGC 2 cut(s) 112, 312
Csp6I GTAC 2 cut(s) 20, 334
CviAII CATG 2 cut(s) 17, 389
CviJI RGCY 5 cut(s) 25, 32, 231, 394, 605
CviKI_1 RGCY 5 cut(s) 25, 32, 231, 394, 605
CviQI GTAC 2 cut(s) 20, 334
DpnI GATC 7 cut(s) 155, 200, 290, 459, 474, 563, 660
DpnII GATC 7 cut(s) 153, 198, 288, 457, 472, 561, 658
DrdI GACNNNNNNGTC 1 cut(s) 302
DseDI GACNNNNNNGTC 1 cut(s) 302
EaeI YGGCCR 1 cut(s) 23
EagI CGGCCG 1 cut(s) 23
EciI GGCGGA 1 cut(s) 55
EclXI CGGCCG 1 cut(s) 23
Eco31I GGTCTC 1 cut(s) 403
Eco52I CGGCCG 1 cut(s) 23
Eco72I CACGTG 1 cut(s) 577
FaeI CATG 2 cut(s) 20, 392
FaiI YATR 8 cut(s) 18, 44, 203, 356, 358, 390, 452, 557
FaqI GGGAC 3 cut(s) 262, 286, 633
FatI CATG 2 cut(s) 16, 388
Fnu4HI GCNGC 1 cut(s) 26
FokI GGATG 1 cut(s) 442
Fsp4HI GCNGC 1 cut(s) 26
FspBI CTAG 3 cut(s) 29, 233, 531
GlaI GCGC 1 cut(s) 387
GluI GCNGC 1 cut(s) 26
HaeIII GGCC 2 cut(s) 25, 231
HapII CCGG 4 cut(s) 35, 50, 398, 476
HgaI GACGC 2 cut(s) 112, 312
HhaI GCGC 1 cut(s) 388
Hin1I GRCGYC 1 cut(s) 323
Hin1II CATG 2 cut(s) 20, 392
Hin6I GCGC 1 cut(s) 386
HinP1I GCGC 1 cut(s) 386
HincII GTYRAC 4 cut(s) 162, 226, 295, 640
HindII GTYRAC 4 cut(s) 162, 226, 295, 640
HinfI GANTC 7 cut(s) 8, 62, 105, 186, 236, 310, 628
HpaII CCGG 4 cut(s) 35, 50, 398, 476
HphI GGTGA 3 cut(s) 64, 392, 559
Hpy166II GTNNAC 6 cut(s) 162, 226, 295, 514, 610, 640
Hpy188I TCNGA 6 cut(s) 13, 185, 315, 420, 462, 472
Hpy188III TCNNGA 6 cut(s) 79, 283, 307, 488, 565, 632
Hpy8I GTNNAC 6 cut(s) 162, 226, 295, 514, 610, 640
Hpy99I CGWCG 2 cut(s) 328, 352
HpyAV CCTTC 1 cut(s) 397
HpyCH4III ACNGT 5 cut(s) 92, 178, 267, 442, 583
HpyCH4IV ACGT 5 cut(s) 297, 371, 435, 516, 576
HpyCH4V TGCA 3 cut(s) 131, 597, 645
HpyF10VI GCNNNNNNNGC 1 cut(s) 120
HpySE526I ACGT 5 cut(s) 297, 371, 435, 516, 576
Hsp92I GRCGYC 1 cut(s) 323
Hsp92II CATG 2 cut(s) 20, 392
HspAI GCGC 1 cut(s) 386
Kzo9I GATC 7 cut(s) 153, 198, 288, 457, 472, 561, 658
LmnI GCTCC 1 cut(s) 37
LpnPI CCDG 5 cut(s) 48, 63, 411, 489, 608
LweI GCATC 1 cut(s) 424
MaeI CTAG 3 cut(s) 29, 233, 531
MaeII ACGT 5 cut(s) 297, 371, 435, 516, 576
MaeIII GTNAC 5 cut(s) 124, 241, 436, 524, 577
MalI GATC 7 cut(s) 155, 200, 290, 459, 474, 563, 660
MboI GATC 7 cut(s) 153, 198, 288, 457, 472, 561, 658
MboII GAAGA 2 cut(s) 562, 580
MflI RGATCY 1 cut(s) 472
MluCI AATT 2 cut(s) 141, 592
MlyI GAGTC 1 cut(s) 195
MmeI TCCRAC 3 cut(s) 96, 286, 363
MnlI CCTC 2 cut(s) 79, 420
MseI TTAA 2 cut(s) 330, 585
MslI CAYNNNNRTG 3 cut(s) 155, 206, 284
MspI CCGG 4 cut(s) 35, 50, 398, 476
MspR9I CCNGG 2 cut(s) 399, 477
MwoI GCNNNNNNNGC 1 cut(s) 120
NciI CCSGG 2 cut(s) 399, 477
NdeII GATC 7 cut(s) 153, 198, 288, 457, 472, 561, 658
NheI GCTAGC 1 cut(s) 28
NlaIII CATG 2 cut(s) 20, 392
NlaIV GGNNCC 1 cut(s) 474
NmuCI GTSAC 4 cut(s) 124, 241, 436, 577
NspI RCATGY 1 cut(s) 20
OliI CACNNNNGTG 1 cut(s) 155
PciI ACATGT 1 cut(s) 16
PcsI WCGNNNNNNNCGW 1 cut(s) 623
PfeI GAWTC 6 cut(s) 8, 62, 105, 236, 310, 628
PflMI CCANNNNNTGG 1 cut(s) 268
PkrI GCNGC 1 cut(s) 27
Ple19I CGATCG 1 cut(s) 156
PleI GAGTC 1 cut(s) 194
PmaCI CACGTG 1 cut(s) 577
PmlI CACGTG 1 cut(s) 577
PpsI GAGTC 1 cut(s) 194
Ppu21I YACGTR 1 cut(s) 577
PscI ACATGT 1 cut(s) 16
Psp1406I AACGTT 1 cut(s) 371
PspCI CACGTG 1 cut(s) 577
PspN4I GGNNCC 1 cut(s) 474
PstNI CAGNNNCTG 1 cut(s) 11
PsuI RGATCY 1 cut(s) 472
PvuI CGATCG 1 cut(s) 156
RsaI GTAC 2 cut(s) 21, 335
RsaNI GTAC 2 cut(s) 20, 334
RseI CAYNNNNRTG 3 cut(s) 155, 206, 284
SaqAI TTAA 2 cut(s) 330, 585
SatI GCNGC 1 cut(s) 26
Sau3AI GATC 7 cut(s) 153, 198, 288, 457, 472, 561, 658
ScaI AGTACT 1 cut(s) 335
SchI GAGTC 1 cut(s) 195
ScrFI CCNGG 2 cut(s) 399, 477
SetI ASST 8 cut(s) 34, 300, 374, 438, 503, 519, 549, 579
SfaNI GCATC 1 cut(s) 424
SmiMI CAYNNNNRTG 3 cut(s) 155, 206, 284
Sse9I AATT 2 cut(s) 141, 592
SsiI CCGC 3 cut(s) 26, 66, 413
SspMI CTAG 3 cut(s) 29, 233, 531
StyD4I CCNGG 2 cut(s) 397, 475
TaaI ACNGT 5 cut(s) 92, 178, 267, 442, 583
TaiI ACGT 5 cut(s) 300, 374, 438, 519, 579
TaqI TCGA 4 cut(s) 284, 425, 487, 657
TaqII GACCGA 1 cut(s) 292
TasI AATT 2 cut(s) 141, 592
TatI WGTACW 1 cut(s) 333
TauI GCSGC 1 cut(s) 28
TfiI GAWTC 6 cut(s) 8, 62, 105, 236, 310, 628
Tru1I TTAA 2 cut(s) 330, 585
Tru9I TTAA 2 cut(s) 330, 585
TscAI CASTG 1 cut(s) 133
TseFI GTSAC 4 cut(s) 124, 241, 436, 577
Tsp45I GTSAC 4 cut(s) 124, 241, 436, 577
TspDTI ATGAA 4 cut(s) 75, 224, 446, 605
TspGWI ACGGA 1 cut(s) 365
TspRI CASTG 1 cut(s) 133
Van91I CCANNNNNTGG 1 cut(s) 268
XceI RCATGY 1 cut(s) 20
XspI CTAG 3 cut(s) 29, 233, 531
ZrmI AGTACT 1 cut(s) 335
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.