FvH4_7g15490

Late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0014279
Physical Location & Seq
Forward (+)
13410965 .. 13412466
1502 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g15490.t1

Sequence Viewer

Length: 660 bp
ATGGTGGAGAAGGAGCAGGCAAGACCGCTAGCCCCAGCCGGCTACCGCCCCAGCAGCGATGACAATGAAGCCGCCCTCCACATGAAAATAGCTCGACGAAAGAAGTTCATCAACTGCTGCGGGTGCATAACGGCCATAGTGCTAATCCAAGCCGTGGTGATCATCATCCTAGCTTTCACTGTGTTCCGAGTCAAGGAGCCGAAGATCATGATGAACAAAGTCACAGTCACGAAGCTCGAGCTCGTCAATGGCACCACCCCCAAGCCGGGCACCAACATCTCGCTAACGGCTGATGTTTCAGTGAAGAATCCGAACGTTGCTTCGTTCAAGTACAGCAACACCACCACCACGCTGTACTATCACGGCACGGTGGTTGGGGAAGCTAGGGGACCTCCGGGACGAGCTAAGGCCCGACGGACCATGCGGATGAACATCACGGTGGATATCATCACTGACATCCTCACCACAAACCCGAACCTGAAGACGGACGTGGGTTCGGGGCTATTGACGATGAGCAGCTATTCTAGGATTCCGGGAAGGGTGAACATGTTGAATATAGTGAAGAAGCATGTGGTGGTGAAGATGAACTGTACTATGACGGTTAATATTTCTAGCCAGGCGATTCAAGAACAAAAGTGCAAGAGGAAGGTTAGTCTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

220

Amino Acids

24.09

Weight (kDa)

10.09

Isoelectric Point (pI)

32.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LEA_2 PF03168 99 - 198 2.6e-11 Late embryogenesis abundant protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014279)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G46150
fragaria_vesca FvH4_7g15490
malus_domestica MD01G1072100.v1.1 MD07G1130600.v1.1
prunus_persica Prupe.2G178500_v2.0.a1
pyrus_communis pycom01g10140
rosa_chinensis RchiOBHm_Chr1g0357811
rosa_laevigata RLG00000027994
rosa_multiflora Rmu_co8384079.1_g000001 Rmu_sc0011109.1_g000008
rosa_roxburghii Rroxscaffold_4G00298480
rosa_rugosa Rorug01G0258800
rosa_samantha Rh1AG272700 Rh1BG240000 Rh1CG256600 Rh1DG268300
rosa_wichuraiana Rw1G024340

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 251, 269
AccB7I CCANNNNNTGG 1 cut(s) 154
AciI CCGC 5 cut(s) 26, 46, 72, 120, 424
AclI AACGTT 1 cut(s) 315
AcoI YGGCCR 1 cut(s) 132
AcuI CTGAAG 1 cut(s) 500
AfaI GTAC 3 cut(s) 332, 356, 592
AfiI CCNNNNNNNGG 5 cut(s) 154, 193, 265, 266, 484
AflIII ACRYGT 1 cut(s) 546
AgsI TTSAA 3 cut(s) 328, 553, 626
AjiI CACGTC 1 cut(s) 490
AjnI CCWGG 1 cut(s) 615
AluBI AGCT 7 cut(s) 92, 173, 235, 241, 383, 404, 519
AluI AGCT 7 cut(s) 92, 173, 235, 241, 383, 404, 519
Alw21I GWGCWC 1 cut(s) 243
Ama87I CYCGRG 1 cut(s) 236
AoxI GGCC 2 cut(s) 132, 408
ApeKI GCWGC 3 cut(s) 54, 117, 516
ArsI GACNNNNNNTTYG 2 cut(s) 210, 242
AspS9I GGNCC 3 cut(s) 389, 409, 417
AsuC2I CCSGG 3 cut(s) 267, 396, 534
AsuHPI GGTGA 4 cut(s) 169, 454, 553, 589
AsuNHI GCTAGC 1 cut(s) 28
AvaI CYCGRG 1 cut(s) 236
AvaII GGWCC 2 cut(s) 389, 417
BaeGI GKGCMC 1 cut(s) 272
BanI GGYRCC 2 cut(s) 251, 269
BanII GRGCYC 1 cut(s) 243
BbsI GAAGAC 1 cut(s) 488
Bbv12I GWGCWC 1 cut(s) 243
BbvI GCAGC 3 cut(s) 66, 104, 528
BceAI ACGGC 4 cut(s) 137, 147, 303, 379
BciT130I CCWGG 1 cut(s) 617
BclI TGATCA 1 cut(s) 159
BcnI CCSGG 3 cut(s) 267, 396, 534
BfaI CTAG 6 cut(s) 29, 170, 384, 525, 612, 658
BisI GCNGC 4 cut(s) 55, 72, 118, 517
BlsI GCNGC 4 cut(s) 56, 73, 119, 518
Bme1390I CCNGG 4 cut(s) 267, 396, 534, 617
Bme18I GGWCC 2 cut(s) 389, 417
BmeT110I CYCGRG 1 cut(s) 236
BmgBI CACGTC 1 cut(s) 490
BmgT120I GGNCC 3 cut(s) 389, 409, 417
BmiI GGNNCC 4 cut(s) 198, 253, 271, 390
BmrFI CCNGG 4 cut(s) 267, 396, 534, 617
BmtI GCTAGC 1 cut(s) 32
BpiI GAAGAC 1 cut(s) 488
Bpu10I CCTNAGC 1 cut(s) 405
BpuMI CCSGG 3 cut(s) 267, 396, 534
BsaBI GATNNNNATC 2 cut(s) 164, 431
BsaJI CCNNGG 1 cut(s) 153
Bsc4I CCNNNNNNNGG 5 cut(s) 154, 193, 265, 266, 484
Bse118I RCCGGY 1 cut(s) 38
Bse8I GATNNNNATC 2 cut(s) 164, 431
BseBI CCWGG 1 cut(s) 617
BseDI CCNNGG 1 cut(s) 153
BseGI GGATG 3 cut(s) 165, 432, 456
BseJI GATNNNNATC 2 cut(s) 164, 431
BseLI CCNNNNNNNGG 5 cut(s) 154, 193, 265, 266, 484
BseSI GKGCMC 1 cut(s) 272
BseXI GCAGC 3 cut(s) 66, 104, 528
BseYI CCCAGC 2 cut(s) 34, 50
BshFI GGCC 2 cut(s) 134, 410
BshNI GGYRCC 2 cut(s) 251, 269
BsiHKAI GWGCWC 1 cut(s) 243
BsiHKCI CYCGRG 1 cut(s) 236
BsiSI CCGG 4 cut(s) 39, 266, 395, 533
BslFI GGGAC 2 cut(s) 402, 411
BslI CCNNNNNNNGG 5 cut(s) 154, 193, 265, 266, 484
BsmFI GGGAC 2 cut(s) 402, 411
BsnI GGCC 2 cut(s) 134, 410
BsoBI CYCGRG 1 cut(s) 236
Bsp1286I GDGCHC 2 cut(s) 243, 272
Bsp143I GATC 2 cut(s) 159, 204
BspACI CCGC 5 cut(s) 26, 46, 72, 120, 424
BspANI GGCC 2 cut(s) 134, 410
BspHI TCATGA 1 cut(s) 207
BspLI GGNNCC 4 cut(s) 198, 253, 271, 390
BspOI GCTAGC 1 cut(s) 32
BspT107I GGYRCC 2 cut(s) 251, 269
BsrFI RCCGGY 1 cut(s) 38
BssAI RCCGGY 1 cut(s) 38
BssECI CCNNGG 1 cut(s) 153
BssMI GATC 2 cut(s) 159, 204
Bst2UI CCWGG 1 cut(s) 617
Bst4CI ACNGT 6 cut(s) 181, 226, 370, 439, 590, 601
BstC8I GCNNGC 3 cut(s) 18, 30, 40
BstDEI CTNAG 1 cut(s) 405
BstDSI CCRYGG 1 cut(s) 153
BstF5I GGATG 3 cut(s) 165, 432, 456
BstKTI GATC 2 cut(s) 162, 207
BstMBI GATC 2 cut(s) 159, 204
BstMWI GCNNNNNNNGC 2 cut(s) 54, 123
BstNI CCWGG 1 cut(s) 617
BstNSI RCATGY 2 cut(s) 550, 572
BstSCI CCNGG 4 cut(s) 265, 394, 532, 615
BstSLI GKGCMC 1 cut(s) 272
BstV1I GCAGC 3 cut(s) 66, 104, 528
BstV2I GAAGAC 1 cut(s) 488
BsuRI GGCC 2 cut(s) 134, 410
BtgI CCRYGG 1 cut(s) 153
BtgZI GCGATG 1 cut(s) 72
BtrI CACGTC 1 cut(s) 490
BtsCI GGATG 3 cut(s) 165, 432, 456
BtsIMutI CAGTG 3 cut(s) 177, 306, 450
Cac8I GCNNGC 3 cut(s) 18, 30, 40
CciI TCATGA 1 cut(s) 207
Cfr10I RCCGGY 1 cut(s) 38
Cfr13I GGNCC 3 cut(s) 389, 409, 417
Csp6I GTAC 3 cut(s) 331, 355, 591
CviAII CATG 5 cut(s) 82, 208, 421, 547, 569
CviQI GTAC 3 cut(s) 331, 355, 591
DdeI CTNAG 1 cut(s) 405
DpnI GATC 2 cut(s) 161, 206
DpnII GATC 2 cut(s) 159, 204
EaeI YGGCCR 1 cut(s) 132
Ecl136II GAGCTC 1 cut(s) 241
Eco24I GRGCYC 1 cut(s) 243
Eco32I GATATC 1 cut(s) 445
Eco47I GGWCC 2 cut(s) 389, 417
Eco53kI GAGCTC 1 cut(s) 241
Eco57I CTGAAG 1 cut(s) 500
Eco88I CYCGRG 1 cut(s) 236
EcoICRI GAGCTC 1 cut(s) 241
EcoO109I RGGNCCY 1 cut(s) 389
EcoRII CCWGG 1 cut(s) 615
EcoRV GATATC 1 cut(s) 445
EcoT38I GRGCYC 1 cut(s) 243
FaeI CATG 5 cut(s) 85, 211, 424, 550, 572
FaiI YATR 9 cut(s) 83, 128, 137, 209, 422, 548, 557, 570, 596
FaqI GGGAC 2 cut(s) 402, 411
FatI CATG 5 cut(s) 81, 207, 420, 546, 568
FauI CCCGC 1 cut(s) 113
FbaI TGATCA 1 cut(s) 159
Fnu4HI GCNGC 4 cut(s) 55, 72, 118, 517
FokI GGATG 3 cut(s) 152, 439, 443
FriOI GRGCYC 1 cut(s) 243
Fsp4HI GCNGC 4 cut(s) 55, 72, 118, 517
FspBI CTAG 6 cut(s) 29, 170, 384, 525, 612, 658
GluI GCNGC 4 cut(s) 55, 72, 118, 517
GsaI CCCAGC 2 cut(s) 38, 54
HaeIII GGCC 2 cut(s) 134, 410
HapII CCGG 4 cut(s) 39, 266, 395, 533
Hin1II CATG 5 cut(s) 85, 211, 424, 550, 572
HinfI GANTC 4 cut(s) 189, 307, 529, 622
HpaII CCGG 4 cut(s) 39, 266, 395, 533
HphI GGTGA 4 cut(s) 169, 454, 553, 589
Hpy166II GTNNAC 1 cut(s) 544
Hpy188I TCNGA 2 cut(s) 188, 312
Hpy188III TCNNGA 3 cut(s) 208, 229, 626
Hpy8I GTNNAC 1 cut(s) 544
Hpy99I CGWCG 2 cut(s) 99, 417
HpyAV CCTTC 3 cut(s) 4, 531, 640
HpyCH4III ACNGT 6 cut(s) 181, 226, 370, 439, 590, 601
HpyCH4IV ACGT 2 cut(s) 315, 489
HpyCH4V TGCA 2 cut(s) 126, 639
HpyF10VI GCNNNNNNNGC 2 cut(s) 54, 123
HpyF3I CTNAG 1 cut(s) 405
HpySE526I ACGT 2 cut(s) 315, 489
Hsp92II CATG 5 cut(s) 85, 211, 424, 550, 572
KroI GCCGGC 1 cut(s) 38
KroNI GCCGGC 1 cut(s) 40
Ksp22I TGATCA 1 cut(s) 159
Kzo9I GATC 2 cut(s) 159, 204
LmnI GCTCC 2 cut(s) 13, 196
Lsp1109I GCAGC 3 cut(s) 66, 104, 528
MaeI CTAG 6 cut(s) 29, 170, 384, 525, 612, 658
MaeII ACGT 2 cut(s) 315, 489
MaeIII GTNAC 2 cut(s) 220, 226
MalI GATC 2 cut(s) 161, 206
MboI GATC 2 cut(s) 159, 204
MboII GAAGA 5 cut(s) 214, 316, 493, 574, 592
MhlI GDGCHC 2 cut(s) 243, 272
MlyI GAGTC 1 cut(s) 198
MnlI CCTC 4 cut(s) 86, 402, 470, 636
MroNI GCCGGC 1 cut(s) 38
MseI TTAA 1 cut(s) 603
MslI CAYNNNNRTG 2 cut(s) 425, 437
MspI CCGG 4 cut(s) 39, 266, 395, 533
MspR9I CCNGG 4 cut(s) 267, 396, 534, 617
MvaI CCWGG 1 cut(s) 617
MwoI GCNNNNNNNGC 2 cut(s) 54, 123
NaeI GCCGGC 1 cut(s) 40
NciI CCSGG 3 cut(s) 267, 396, 534
NdeII GATC 2 cut(s) 159, 204
NgoMIV GCCGGC 1 cut(s) 38
NheI GCTAGC 1 cut(s) 28
NlaIII CATG 5 cut(s) 85, 211, 424, 550, 572
NlaIV GGNNCC 4 cut(s) 198, 253, 271, 390
NmuCI GTSAC 2 cut(s) 220, 226
NspI RCATGY 2 cut(s) 550, 572
PaeR7I CTCGAG 1 cut(s) 236
PagI TCATGA 1 cut(s) 207
PciI ACATGT 1 cut(s) 546
PdiI GCCGGC 1 cut(s) 40
PfeI GAWTC 3 cut(s) 307, 529, 622
PflMI CCANNNNNTGG 1 cut(s) 154
PfoI TCCNGGA 2 cut(s) 394, 532
PkrI GCNGC 4 cut(s) 56, 73, 119, 518
PleI GAGTC 1 cut(s) 197
PpsI GAGTC 1 cut(s) 197
PpuMI RGGWCCY 1 cut(s) 389
PscI ACATGT 1 cut(s) 546
Psp124BI GAGCTC 1 cut(s) 243
Psp1406I AACGTT 1 cut(s) 315
Psp5II RGGWCCY 1 cut(s) 389
Psp6I CCWGG 1 cut(s) 615
PspFI CCCAGC 2 cut(s) 34, 50
PspGI CCWGG 1 cut(s) 615
PspN4I GGNNCC 4 cut(s) 198, 253, 271, 390
PspPI GGNCC 3 cut(s) 389, 409, 417
PspPPI RGGWCCY 1 cut(s) 389
PspXI VCTCGAGB 1 cut(s) 236
RsaI GTAC 3 cut(s) 332, 356, 592
RsaNI GTAC 3 cut(s) 331, 355, 591
RseI CAYNNNNRTG 2 cut(s) 425, 437
SacI GAGCTC 1 cut(s) 243
SaqAI TTAA 1 cut(s) 603
SatI GCNGC 4 cut(s) 55, 72, 118, 517
Sau3AI GATC 2 cut(s) 159, 204
Sau96I GGNCC 3 cut(s) 389, 409, 417
SchI GAGTC 1 cut(s) 198
ScrFI CCNGG 4 cut(s) 267, 396, 534, 617
SduI GDGCHC 2 cut(s) 243, 272
Sfr274I CTCGAG 1 cut(s) 236
SinI GGWCC 2 cut(s) 389, 417
SlaI CTCGAG 1 cut(s) 236
SmiMI CAYNNNNRTG 2 cut(s) 425, 437
SmlI CTYRAG 1 cut(s) 236
SmoI CTYRAG 1 cut(s) 236
SsiI CCGC 5 cut(s) 26, 46, 72, 120, 424
SspI AATATT 1 cut(s) 607
SspMI CTAG 6 cut(s) 29, 170, 384, 525, 612, 658
SstI GAGCTC 1 cut(s) 243
StyD4I CCNGG 4 cut(s) 265, 394, 532, 615
TaaI ACNGT 6 cut(s) 181, 226, 370, 439, 590, 601
TaiI ACGT 2 cut(s) 318, 492
TaqI TCGA 2 cut(s) 94, 237
TatI WGTACW 3 cut(s) 330, 354, 590
TauI GCSGC 1 cut(s) 74
TfiI GAWTC 3 cut(s) 307, 529, 622
Tru1I TTAA 1 cut(s) 603
Tru9I TTAA 1 cut(s) 603
TscAI CASTG 3 cut(s) 184, 306, 457
TseFI GTSAC 2 cut(s) 220, 226
TseI GCWGC 3 cut(s) 54, 117, 516
Tsp45I GTSAC 2 cut(s) 220, 226
TspDTI ATGAA 6 cut(s) 81, 97, 98, 227, 443, 599
TspGWI ACGGA 2 cut(s) 430, 500
TspRI CASTG 3 cut(s) 184, 306, 457
Van91I CCANNNNNTGG 1 cut(s) 154
VpaK11BI GGWCC 2 cut(s) 389, 417
XceI RCATGY 2 cut(s) 550, 572
XhoI CTCGAG 1 cut(s) 236
XspI CTAG 6 cut(s) 29, 170, 384, 525, 612, 658
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.