Prupe.2G178500_v2.0.a1

Late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0014279
Physical Location & Seq
Forward (+)
22278096 .. 22279198
1103 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G178500.1

Sequence Viewer

Length: 681 bp
ATGGTGGAGAAGGAGCAGGTCAGACCACTAGCCCCCGCCGCCAACGGCCAGAGCAGCGACGCAGACGAGGCCGCCCTTCACTCAAAGAAATTTGGACTAAAAAAGTTCATCTACTGCTGTGGCGGCATAACAGCCTTGCTCTTAATCCTAGCCGTGGTGATCATAATTCTAGCGTTCACTGTGTTCCGCTTGAAGGAGCCAAAGATCAAAATGAACAAAGTCACAGTTACAAGGCTGGAGCTGATCAACGACAACACAACCCCAAAGCCAGGCTCCAACATATCGTTAACAGCCGATGTGTCGGTGAAAAATCCCAACGCGGCTTCGTTTAGGTACAACAACACCACCACCACTCTGTATTATCACGGCGTGGTGGTGGGGGAGGCTCATGGCTCGCCGGGCAAGGCTAAGGCCCGACGGACCATGAGAATGAATATAACTGTTGATGTCATAACTGATCGGCTCACATCAAATCCCAAGTGGGGGGCGGACGTGGGATCGGGGTTATTGACTATGAGTAGCTATTCTAGGATTCCAGGGAGGGTGAATATGTGGAATATTATCAAGAGACATGTGGTTGTGAAGATGAATTGTACCATGACCGTTAACATTTCCAGCCAGGCAATTCAAGAACAAAAATGCAAGAGGAAAGTTACCTCTAGGTTTGTAGTTTATTTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2 zf-rbx1

Protein Analysis

227

Amino Acids

24.94

Weight (kDa)

10.05

Isoelectric Point (pI)

36.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014279)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G46150
fragaria_vesca FvH4_7g15490
malus_domestica MD01G1072100.v1.1 MD07G1130600.v1.1
prunus_persica Prupe.2G178500_v2.0.a1
pyrus_communis pycom01g10140
rosa_chinensis RchiOBHm_Chr1g0357811
rosa_laevigata RLG00000027994
rosa_multiflora Rmu_co8384079.1_g000001 Rmu_sc0011109.1_g000008
rosa_roxburghii Rroxscaffold_4G00298480
rosa_rugosa Rorug01G0258800
rosa_samantha Rh1AG272700 Rh1BG240000 Rh1CG256600 Rh1DG268300
rosa_wichuraiana Rw1G024340

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 679
Acc36I ACCTGC 1 cut(s) 7
AccII CGCG 1 cut(s) 320
AciI CCGC 7 cut(s) 36, 39, 72, 123, 187, 320, 488
AclWI GGATC 1 cut(s) 505
AcoI YGGCCR 1 cut(s) 46
AcsI RAATTY 1 cut(s) 89
AdeI CACNNNGTG 1 cut(s) 370
AfaI GTAC 2 cut(s) 335, 595
AfiI CCNNNNNNNGG 5 cut(s) 154, 193, 269, 482, 483
AflIII ACRYGT 1 cut(s) 571
AgsI TTSAA 2 cut(s) 193, 629
AjiI CACGTC 1 cut(s) 493
AjnI CCWGG 3 cut(s) 268, 535, 618
AluBI AGCT 2 cut(s) 241, 522
AluI AGCT 2 cut(s) 241, 522
Alw26I GTCTC 1 cut(s) 562
AlwI GGATC 1 cut(s) 505
AoxI GGCC 3 cut(s) 46, 69, 411
ApeKI GCWGC 1 cut(s) 54
ApoI RAATTY 1 cut(s) 89
AspS9I GGNCC 2 cut(s) 412, 420
AsuC2I CCSGG 1 cut(s) 399
AsuHPI GGTGA 3 cut(s) 169, 316, 556
AvaII GGWCC 1 cut(s) 420
BbvI GCAGC 1 cut(s) 66
BceAI ACGGC 3 cut(s) 61, 137, 382
BciT130I CCWGG 3 cut(s) 270, 537, 620
BclI TGATCA 2 cut(s) 159, 243
BcnI CCSGG 1 cut(s) 399
BcoDI GTCTC 1 cut(s) 562
BfaI CTAG 5 cut(s) 29, 149, 170, 528, 660
BfuAI ACCTGC 1 cut(s) 7
BisI GCNGC 5 cut(s) 39, 55, 72, 124, 321
BlsI GCNGC 5 cut(s) 40, 56, 73, 125, 322
Bme1390I CCNGG 4 cut(s) 270, 399, 537, 620
Bme18I GGWCC 1 cut(s) 420
BmgBI CACGTC 1 cut(s) 493
BmgT120I GGNCC 2 cut(s) 412, 420
BmiI GGNNCC 2 cut(s) 198, 274
BmrFI CCNGG 4 cut(s) 270, 399, 537, 620
BpmI CTGGAG 1 cut(s) 257
Bpu10I CCTNAGC 1 cut(s) 408
BpuMI CCSGG 1 cut(s) 399
BsaJI CCNNGG 2 cut(s) 153, 536
Bsc4I CCNNNNNNNGG 5 cut(s) 154, 193, 269, 482, 483
BseBI CCWGG 3 cut(s) 270, 537, 620
BseDI CCNNGG 2 cut(s) 153, 536
BseLI CCNNNNNNNGG 5 cut(s) 154, 193, 269, 482, 483
BseXI GCAGC 1 cut(s) 66
Bsh1236I CGCG 1 cut(s) 320
BshFI GGCC 3 cut(s) 48, 71, 413
BsiSI CCGG 1 cut(s) 398
BslI CCNNNNNNNGG 5 cut(s) 154, 193, 269, 482, 483
BsmAI GTCTC 1 cut(s) 562
BsnI GGCC 3 cut(s) 48, 71, 413
Bsp143I GATC 5 cut(s) 159, 204, 243, 457, 497
BspACI CCGC 7 cut(s) 36, 39, 72, 123, 187, 320, 488
BspANI GGCC 3 cut(s) 48, 71, 413
BspFNI CGCG 1 cut(s) 320
BspLI GGNNCC 2 cut(s) 198, 274
BspMI ACCTGC 1 cut(s) 7
BspPI GGATC 1 cut(s) 505
BssECI CCNNGG 2 cut(s) 153, 536
BssMI GATC 5 cut(s) 159, 204, 243, 457, 497
Bst2UI CCWGG 3 cut(s) 270, 537, 620
Bst4CI ACNGT 4 cut(s) 181, 226, 442, 604
BstC8I GCNNGC 1 cut(s) 395
BstDEI CTNAG 1 cut(s) 408
BstDSI CCRYGG 1 cut(s) 153
BstFNI CGCG 1 cut(s) 320
BstKTI GATC 5 cut(s) 162, 207, 246, 460, 500
BstMAI GTCTC 1 cut(s) 562
BstMBI GATC 5 cut(s) 159, 204, 243, 457, 497
BstMWI GCNNNNNNNGC 5 cut(s) 38, 54, 68, 123, 399
BstNI CCWGG 3 cut(s) 270, 537, 620
BstNSI RCATGY 1 cut(s) 575
BstSCI CCNGG 4 cut(s) 268, 397, 535, 618
BstUI CGCG 1 cut(s) 320
BstV1I GCAGC 1 cut(s) 66
BsuRI GGCC 3 cut(s) 48, 71, 413
BtgI CCRYGG 1 cut(s) 153
BtrI CACGTC 1 cut(s) 493
BtsIMutI CAGTG 1 cut(s) 177
BveI ACCTGC 1 cut(s) 7
Cac8I GCNNGC 1 cut(s) 395
Cfr13I GGNCC 2 cut(s) 412, 420
CseI GACGC 1 cut(s) 68
Csp6I GTAC 2 cut(s) 334, 594
CviAII CATG 4 cut(s) 389, 424, 572, 598
CviQI GTAC 2 cut(s) 334, 594
DdeI CTNAG 1 cut(s) 408
DpnI GATC 5 cut(s) 161, 206, 245, 459, 499
DpnII GATC 5 cut(s) 159, 204, 243, 457, 497
DraIII CACNNNGTG 1 cut(s) 370
EaeI YGGCCR 1 cut(s) 46
EciI GGCGGA 1 cut(s) 503
Eco47I GGWCC 1 cut(s) 420
EcoRII CCWGG 3 cut(s) 268, 535, 618
FaeI CATG 4 cut(s) 392, 427, 575, 601
FatI CATG 4 cut(s) 388, 423, 571, 597
FauI CCCGC 1 cut(s) 43
FbaI TGATCA 2 cut(s) 159, 243
Fnu4HI GCNGC 5 cut(s) 39, 55, 72, 124, 321
Fsp4HI GCNGC 5 cut(s) 39, 55, 72, 124, 321
FspBI CTAG 5 cut(s) 29, 149, 170, 528, 660
GluI GCNGC 5 cut(s) 39, 55, 72, 124, 321
GsuI CTGGAG 1 cut(s) 257
HaeIII GGCC 3 cut(s) 48, 71, 413
HapII CCGG 1 cut(s) 398
HgaI GACGC 1 cut(s) 68
Hin1II CATG 4 cut(s) 392, 427, 575, 601
HincII GTYRAC 2 cut(s) 288, 607
HindII GTYRAC 2 cut(s) 288, 607
HinfI GANTC 1 cut(s) 532
HpaI GTTAAC 2 cut(s) 288, 607
HpaII CCGG 1 cut(s) 398
HphI GGTGA 3 cut(s) 169, 316, 556
Hpy166II GTNNAC 3 cut(s) 177, 288, 607
Hpy188I TCNGA 1 cut(s) 23
Hpy188III TCNNGA 2 cut(s) 565, 629
Hpy8I GTNNAC 3 cut(s) 177, 288, 607
Hpy99I CGWCG 2 cut(s) 62, 420
HpyAV CCTTC 3 cut(s) 4, 86, 187
HpyCH4III ACNGT 4 cut(s) 181, 226, 442, 604
HpyCH4IV ACGT 1 cut(s) 492
HpyCH4V TGCA 1 cut(s) 642
HpyF10VI GCNNNNNNNGC 5 cut(s) 38, 54, 68, 123, 399
HpyF3I CTNAG 1 cut(s) 408
HpySE526I ACGT 1 cut(s) 492
Hsp92II CATG 4 cut(s) 392, 427, 575, 601
Ksp22I TGATCA 2 cut(s) 159, 243
KspAI GTTAAC 2 cut(s) 288, 607
Kzo9I GATC 5 cut(s) 159, 204, 243, 457, 497
LmnI GCTCC 4 cut(s) 13, 196, 238, 278
Lsp1109I GCAGC 1 cut(s) 66
MaeI CTAG 5 cut(s) 29, 149, 170, 528, 660
MaeII ACGT 1 cut(s) 492
MaeIII GTNAC 3 cut(s) 220, 226, 652
MalI GATC 5 cut(s) 161, 206, 245, 459, 499
MboI GATC 5 cut(s) 159, 204, 243, 457, 497
MboII GAAGA 1 cut(s) 595
MluCI AATT 4 cut(s) 89, 165, 589, 624
MmeI TCCRAC 1 cut(s) 300
MnlI CCTC 5 cut(s) 61, 376, 534, 639, 667
MseI TTAA 3 cut(s) 143, 287, 606
MslI CAYNNNNRTG 1 cut(s) 428
MspI CCGG 1 cut(s) 398
MspR9I CCNGG 4 cut(s) 270, 399, 537, 620
MvaI CCWGG 3 cut(s) 270, 537, 620
MvnI CGCG 1 cut(s) 320
MwoI GCNNNNNNNGC 5 cut(s) 38, 54, 68, 123, 399
NciI CCSGG 1 cut(s) 399
NdeII GATC 5 cut(s) 159, 204, 243, 457, 497
NlaIII CATG 4 cut(s) 392, 427, 575, 601
NlaIV GGNNCC 2 cut(s) 198, 274
NmuCI GTSAC 1 cut(s) 220
NspI RCATGY 1 cut(s) 575
PciI ACATGT 1 cut(s) 571
PfeI GAWTC 1 cut(s) 532
PkrI GCNGC 5 cut(s) 40, 56, 73, 125, 322
PscI ACATGT 1 cut(s) 571
PsiI TTATAA 1 cut(s) 679
Psp6I CCWGG 3 cut(s) 268, 535, 618
PspGI CCWGG 3 cut(s) 268, 535, 618
PspN4I GGNNCC 2 cut(s) 198, 274
PspPI GGNCC 2 cut(s) 412, 420
RsaI GTAC 2 cut(s) 335, 595
RsaNI GTAC 2 cut(s) 334, 594
RseI CAYNNNNRTG 1 cut(s) 428
SaqAI TTAA 3 cut(s) 143, 287, 606
SatI GCNGC 5 cut(s) 39, 55, 72, 124, 321
Sau3AI GATC 5 cut(s) 159, 204, 243, 457, 497
Sau96I GGNCC 2 cut(s) 412, 420
ScrFI CCNGG 4 cut(s) 270, 399, 537, 620
SetI ASST 7 cut(s) 21, 243, 335, 495, 524, 659, 665
SinI GGWCC 1 cut(s) 420
SmiMI CAYNNNNRTG 1 cut(s) 428
Sse9I AATT 4 cut(s) 89, 165, 589, 624
SsiI CCGC 7 cut(s) 36, 39, 72, 123, 187, 320, 488
SspI AATATT 1 cut(s) 559
SspMI CTAG 5 cut(s) 29, 149, 170, 528, 660
StyD4I CCNGG 4 cut(s) 268, 397, 535, 618
TaaI ACNGT 4 cut(s) 181, 226, 442, 604
TaiI ACGT 1 cut(s) 495
TasI AATT 4 cut(s) 89, 165, 589, 624
TauI GCSGC 4 cut(s) 41, 74, 126, 323
TfiI GAWTC 1 cut(s) 532
Tru1I TTAA 3 cut(s) 143, 287, 606
Tru9I TTAA 3 cut(s) 143, 287, 606
TscAI CASTG 1 cut(s) 184
TseFI GTSAC 1 cut(s) 220
TseI GCWGC 1 cut(s) 54
Tsp45I GTSAC 1 cut(s) 220
TspDTI ATGAA 4 cut(s) 97, 227, 446, 602
TspGWI ACGGA 1 cut(s) 433
TspRI CASTG 1 cut(s) 184
VpaK11BI GGWCC 1 cut(s) 420
XapI RAATTY 1 cut(s) 89
XceI RCATGY 1 cut(s) 575
XspI CTAG 5 cut(s) 29, 149, 170, 528, 660
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.