Rmu_sc0011109.1_g000008

Late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0011109.1
OG0014279
Physical Location & Seq
Reverse (-)
23254 .. 23913
660 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0011109.1_g000008.1.cds

Sequence Viewer

Length: 660 bp
atggtggagaaggagcaggcaagaccgctagccccggccggctaccgacccagcagcgacgacaatgaagctgccctccacataaaaagagctcgacaaaagaagttcataaactgctgcgggtgcataacagccatagtgctaatccaagccgttgttatcataatcctagctttcaccgtgtttcgagtcaaggagccgaaaatcaacatgaacaaagtcatagtcacaaagctcgagctggtcaatggcaccacccccaagccgggcaccaacatctctttaacggctgatgtttcggtgaagaatccaaacgtggcttcgttcaagtacagcaacaccaccaccacgctgtattatcacggcacggtggtgggggaggctagaggtccgcctggacgatctaaggcccgacggacgacgaggatgaacatcacggtggatattatcaccgacatgctgattaccaacccgaacctgaaggcggacgtggattcggggctgttgacgatgagcagctattctaggattccgggaagggtgaacatgttgaatatagtgaagaagcatgtcattgtgaagatgaactgtactatgacggttaatatttctagccaggcgattcaagaacaaaagtgcaagaggaaggttaatctatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

219

Amino Acids

24.17

Weight (kDa)

10.02

Isoelectric Point (pI)

35.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014279)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G46150
fragaria_vesca FvH4_7g15490
malus_domestica MD01G1072100.v1.1 MD07G1130600.v1.1
prunus_persica Prupe.2G178500_v2.0.a1
pyrus_communis pycom01g10140
rosa_chinensis RchiOBHm_Chr1g0357811
rosa_laevigata RLG00000027994
rosa_multiflora Rmu_co8384079.1_g000001 Rmu_sc0011109.1_g000008
rosa_roxburghii Rroxscaffold_4G00298480
rosa_rugosa Rorug01G0258800
rosa_samantha Rh1AG272700 Rh1BG240000 Rh1CG256600 Rh1DG268300
rosa_wichuraiana Rw1G024340

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 251, 269
AciI CCGC 4 cut(s) 26, 120, 392, 485
AcoI YGGCCR 1 cut(s) 36
AcuI CTGAAG 1 cut(s) 500
AfaI GTAC 2 cut(s) 332, 592
AfiI CCNNNNNNNGG 3 cut(s) 265, 266, 484
AflIII ACRYGT 1 cut(s) 546
AgsI TTSAA 3 cut(s) 328, 553, 626
AjiI CACGTC 1 cut(s) 490
AjnI CCWGG 2 cut(s) 394, 615
AjuI GAANNNNNNNTTGG 2 cut(s) 304, 336
AleI CACNNNNGTG 1 cut(s) 371
AluBI AGCT 6 cut(s) 71, 92, 173, 235, 241, 519
AluI AGCT 6 cut(s) 71, 92, 173, 235, 241, 519
Alw21I GWGCWC 1 cut(s) 94
Ama87I CYCGRG 1 cut(s) 236
AoxI GGCC 2 cut(s) 36, 408
ApeKI GCWGC 4 cut(s) 54, 71, 117, 516
ArsI GACNNNNNNTTYG 2 cut(s) 210, 242
AspS9I GGNCC 2 cut(s) 389, 409
AsuC2I CCSGG 3 cut(s) 35, 267, 534
AsuHPI GGTGA 4 cut(s) 169, 313, 442, 553
AsuNHI GCTAGC 1 cut(s) 28
AvaI CYCGRG 1 cut(s) 236
AvaII GGWCC 1 cut(s) 389
BaeGI GKGCMC 1 cut(s) 272
BanI GGYRCC 2 cut(s) 251, 269
BanII GRGCYC 1 cut(s) 94
Bbv12I GWGCWC 1 cut(s) 94
BbvI GCAGC 4 cut(s) 58, 66, 104, 528
BceAI ACGGC 3 cut(s) 137, 303, 379
BciT130I CCWGG 2 cut(s) 396, 617
BcnI CCSGG 3 cut(s) 35, 267, 534
BfaI CTAG 5 cut(s) 29, 170, 384, 525, 612
BfmI CTRYAG 1 cut(s) 656
BisI GCNGC 4 cut(s) 55, 72, 118, 517
BlsI GCNGC 4 cut(s) 56, 73, 119, 518
Bme1390I CCNGG 5 cut(s) 35, 267, 396, 534, 617
Bme18I GGWCC 1 cut(s) 389
BmeT110I CYCGRG 1 cut(s) 236
BmgBI CACGTC 1 cut(s) 490
BmgT120I GGNCC 2 cut(s) 389, 409
BmiI GGNNCC 3 cut(s) 198, 253, 271
BmrFI CCNGG 5 cut(s) 35, 267, 396, 534, 617
BmtI GCTAGC 1 cut(s) 32
BpuMI CCSGG 3 cut(s) 35, 267, 534
BsaBI GATNNNNATC 1 cut(s) 431
BsaJI CCNNGG 1 cut(s) 33
Bsc4I CCNNNNNNNGG 3 cut(s) 265, 266, 484
Bse118I RCCGGY 1 cut(s) 38
Bse8I GATNNNNATC 1 cut(s) 431
BseBI CCWGG 2 cut(s) 396, 617
BseDI CCNNGG 1 cut(s) 33
BseGI GGATG 1 cut(s) 432
BseJI GATNNNNATC 1 cut(s) 431
BseLI CCNNNNNNNGG 3 cut(s) 265, 266, 484
BseSI GKGCMC 1 cut(s) 272
BseX3I CGGCCG 1 cut(s) 36
BseXI GCAGC 4 cut(s) 58, 66, 104, 528
BseYI CCCAGC 1 cut(s) 50
Bsh1285I CGRYCG 1 cut(s) 39
BshFI GGCC 2 cut(s) 38, 410
BshNI GGYRCC 2 cut(s) 251, 269
BsiEI CGRYCG 1 cut(s) 39
BsiHKAI GWGCWC 1 cut(s) 94
BsiHKCI CYCGRG 1 cut(s) 236
BsiSI CCGG 4 cut(s) 35, 39, 266, 533
BslI CCNNNNNNNGG 3 cut(s) 265, 266, 484
BsnI GGCC 2 cut(s) 38, 410
BsoBI CYCGRG 1 cut(s) 236
Bsp1286I GDGCHC 2 cut(s) 94, 272
Bsp143I GATC 1 cut(s) 401
BspACI CCGC 4 cut(s) 26, 120, 392, 485
BspANI GGCC 2 cut(s) 38, 410
BspLI GGNNCC 3 cut(s) 198, 253, 271
BspOI GCTAGC 1 cut(s) 32
BspT107I GGYRCC 2 cut(s) 251, 269
BsrFI RCCGGY 1 cut(s) 38
BssAI RCCGGY 1 cut(s) 38
BssECI CCNNGG 1 cut(s) 33
BssMI GATC 1 cut(s) 401
Bst2UI CCWGG 2 cut(s) 396, 617
Bst4CI ACNGT 5 cut(s) 181, 370, 439, 590, 601
BstC8I GCNNGC 3 cut(s) 18, 30, 40
BstDEI CTNAG 1 cut(s) 405
BstF5I GGATG 1 cut(s) 432
BstKTI GATC 1 cut(s) 404
BstMBI GATC 1 cut(s) 401
BstMCI CGRYCG 1 cut(s) 39
BstMWI GCNNNNNNNGC 1 cut(s) 123
BstNI CCWGG 2 cut(s) 396, 617
BstNSI RCATGY 3 cut(s) 460, 550, 572
BstSCI CCNGG 5 cut(s) 33, 265, 394, 532, 615
BstSFI CTRYAG 1 cut(s) 656
BstSLI GKGCMC 1 cut(s) 272
BstV1I GCAGC 4 cut(s) 58, 66, 104, 528
BstZI CGGCCG 1 cut(s) 36
BsuRI GGCC 2 cut(s) 38, 410
BtrI CACGTC 1 cut(s) 490
BtsCI GGATG 1 cut(s) 432
Cac8I GCNNGC 3 cut(s) 18, 30, 40
Cfr10I RCCGGY 1 cut(s) 38
Cfr13I GGNCC 2 cut(s) 389, 409
Csp6I GTAC 2 cut(s) 331, 591
CviAII CATG 4 cut(s) 211, 457, 547, 569
CviQI GTAC 2 cut(s) 331, 591
DdeI CTNAG 1 cut(s) 405
DpnI GATC 1 cut(s) 403
DpnII GATC 1 cut(s) 401
EaeI YGGCCR 1 cut(s) 36
EagI CGGCCG 1 cut(s) 36
EciI GGCGGA 2 cut(s) 381, 500
Ecl136II GAGCTC 1 cut(s) 92
EclXI CGGCCG 1 cut(s) 36
Eco24I GRGCYC 1 cut(s) 94
Eco47I GGWCC 1 cut(s) 389
Eco52I CGGCCG 1 cut(s) 36
Eco53kI GAGCTC 1 cut(s) 92
Eco57I CTGAAG 1 cut(s) 500
Eco88I CYCGRG 1 cut(s) 236
EcoICRI GAGCTC 1 cut(s) 92
EcoRII CCWGG 2 cut(s) 394, 615
EcoT38I GRGCYC 1 cut(s) 94
FaeI CATG 4 cut(s) 214, 460, 550, 572
FatI CATG 4 cut(s) 210, 456, 546, 568
FauI CCCGC 1 cut(s) 113
Fnu4HI GCNGC 4 cut(s) 55, 72, 118, 517
FokI GGATG 1 cut(s) 439
FriOI GRGCYC 1 cut(s) 94
Fsp4HI GCNGC 4 cut(s) 55, 72, 118, 517
FspBI CTAG 5 cut(s) 29, 170, 384, 525, 612
GluI GCNGC 4 cut(s) 55, 72, 118, 517
GsaI CCCAGC 1 cut(s) 54
HaeIII GGCC 2 cut(s) 38, 410
HapII CCGG 4 cut(s) 35, 39, 266, 533
Hin1II CATG 4 cut(s) 214, 460, 550, 572
HincII GTYRAC 1 cut(s) 507
HindII GTYRAC 1 cut(s) 507
HinfI GANTC 5 cut(s) 189, 307, 494, 529, 622
HpaII CCGG 4 cut(s) 35, 39, 266, 533
HphI GGTGA 4 cut(s) 169, 313, 442, 553
Hpy166II GTNNAC 2 cut(s) 507, 544
Hpy188III TCNNGA 1 cut(s) 626
Hpy8I GTNNAC 2 cut(s) 507, 544
Hpy99I CGWCG 3 cut(s) 62, 417, 424
HpyAV CCTTC 4 cut(s) 4, 475, 531, 640
HpyCH4III ACNGT 5 cut(s) 181, 370, 439, 590, 601
HpyCH4IV ACGT 2 cut(s) 315, 489
HpyCH4V TGCA 2 cut(s) 126, 639
HpyF10VI GCNNNNNNNGC 1 cut(s) 123
HpyF3I CTNAG 1 cut(s) 405
HpySE526I ACGT 2 cut(s) 315, 489
Hsp92II CATG 4 cut(s) 214, 460, 550, 572
KroI GCCGGC 1 cut(s) 38
KroNI GCCGGC 1 cut(s) 40
Kzo9I GATC 1 cut(s) 401
LmnI GCTCC 2 cut(s) 13, 196
Lsp1109I GCAGC 4 cut(s) 58, 66, 104, 528
MaeI CTAG 5 cut(s) 29, 170, 384, 525, 612
MaeII ACGT 2 cut(s) 315, 489
MaeIII GTNAC 1 cut(s) 226
MalI GATC 1 cut(s) 403
MboI GATC 1 cut(s) 401
MboII GAAGA 3 cut(s) 316, 574, 592
MhlI GDGCHC 2 cut(s) 94, 272
MlyI GAGTC 1 cut(s) 198
MnlI CCTC 5 cut(s) 86, 373, 380, 417, 636
MroNI GCCGGC 1 cut(s) 38
MseI TTAA 3 cut(s) 284, 603, 651
MslI CAYNNNNRTG 3 cut(s) 371, 437, 455
MspI CCGG 4 cut(s) 35, 39, 266, 533
MspR9I CCNGG 5 cut(s) 35, 267, 396, 534, 617
MvaI CCWGG 2 cut(s) 396, 617
MwoI GCNNNNNNNGC 1 cut(s) 123
NaeI GCCGGC 1 cut(s) 40
NciI CCSGG 3 cut(s) 35, 267, 534
NdeII GATC 1 cut(s) 401
NgoMIV GCCGGC 1 cut(s) 38
NheI GCTAGC 1 cut(s) 28
NlaIII CATG 4 cut(s) 214, 460, 550, 572
NlaIV GGNNCC 3 cut(s) 198, 253, 271
NmuCI GTSAC 1 cut(s) 226
NspI RCATGY 3 cut(s) 460, 550, 572
OliI CACNNNNGTG 1 cut(s) 371
PaeR7I CTCGAG 1 cut(s) 236
PciI ACATGT 1 cut(s) 546
PdiI GCCGGC 1 cut(s) 40
PfeI GAWTC 4 cut(s) 307, 494, 529, 622
PfoI TCCNGGA 1 cut(s) 532
PkrI GCNGC 4 cut(s) 56, 73, 119, 518
PleI GAGTC 1 cut(s) 197
PpsI GAGTC 1 cut(s) 197
PscI ACATGT 1 cut(s) 546
Psp124BI GAGCTC 1 cut(s) 94
Psp6I CCWGG 2 cut(s) 394, 615
PspFI CCCAGC 1 cut(s) 50
PspGI CCWGG 2 cut(s) 394, 615
PspN4I GGNNCC 3 cut(s) 198, 253, 271
PspPI GGNCC 2 cut(s) 389, 409
PspXI VCTCGAGB 1 cut(s) 236
RsaI GTAC 2 cut(s) 332, 592
RsaNI GTAC 2 cut(s) 331, 591
RseI CAYNNNNRTG 3 cut(s) 371, 437, 455
SacI GAGCTC 1 cut(s) 94
SaqAI TTAA 3 cut(s) 284, 603, 651
SatI GCNGC 4 cut(s) 55, 72, 118, 517
Sau3AI GATC 1 cut(s) 401
Sau96I GGNCC 2 cut(s) 389, 409
SchI GAGTC 1 cut(s) 198
ScrFI CCNGG 5 cut(s) 35, 267, 396, 534, 617
SduI GDGCHC 2 cut(s) 94, 272
SfcI CTRYAG 1 cut(s) 656
Sfr274I CTCGAG 1 cut(s) 236
SinI GGWCC 1 cut(s) 389
SlaI CTCGAG 1 cut(s) 236
SmiMI CAYNNNNRTG 3 cut(s) 371, 437, 455
SmlI CTYRAG 1 cut(s) 236
SmoI CTYRAG 1 cut(s) 236
SsiI CCGC 4 cut(s) 26, 120, 392, 485
SspI AATATT 1 cut(s) 607
SspMI CTAG 5 cut(s) 29, 170, 384, 525, 612
SstI GAGCTC 1 cut(s) 94
StyD4I CCNGG 5 cut(s) 33, 265, 394, 532, 615
TaaI ACNGT 5 cut(s) 181, 370, 439, 590, 601
TaiI ACGT 2 cut(s) 318, 492
TaqI TCGA 3 cut(s) 94, 187, 237
TatI WGTACW 2 cut(s) 330, 590
TfiI GAWTC 4 cut(s) 307, 494, 529, 622
Tru1I TTAA 3 cut(s) 284, 603, 651
Tru9I TTAA 3 cut(s) 284, 603, 651
TseFI GTSAC 1 cut(s) 226
TseI GCWGC 4 cut(s) 54, 71, 117, 516
Tsp45I GTSAC 1 cut(s) 226
TspDTI ATGAA 5 cut(s) 81, 97, 227, 443, 599
TspGWI ACGGA 1 cut(s) 430
VpaK11BI GGWCC 1 cut(s) 389
XceI RCATGY 3 cut(s) 460, 550, 572
XhoI CTCGAG 1 cut(s) 236
XspI CTAG 5 cut(s) 29, 170, 384, 525, 612
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.