RLG00000027994

Late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0014279
Physical Location & Seq
Reverse (-)
17571205 .. 17571910
706 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000027994

Sequence Viewer

Length: 660 bp
ATGGTGGAGAAGGAGCAGGCAAGACCGCTAGCCCCGGCCGGCCACCAACCCAGCAGCGACGACAATGAAGCTGCCCTCCACATAAAAAGAGCTCGACAAAAGAAGTTCATAAACTGCTGCGGGTGCATAACAGCCATAGTGCTAATCCAAGCCGTAGTGATCATAATCCTAGCTTTCACCGTGTTCCGAGTCAAGGAGCCGAAAATCAACATGAACAAAGTCACAGTCACAAAGCTCGAGCTGGTCAATGGCACCACCCCCAAGCCGGGCACCAACATCTCGTTAACGGCTGATGTTTCGGTGAAGAATCCAAACGTGGCTTCGTTCAAGTACAGCAACACCACCACCACGCTGTATTATCACGGCACGGTGGTGGGGGAGGCTAGAGGTCCGCCTGGACGATCTAAGGCCCGACGGACCATGAGGATGAACATCACGGTGGATATTATCACCGACATGCTGATTTCCAACCCGAACCTGAAGGCGGACGTGGATTCGGGGCTGTTGACGATGAGCAGCTATTCTAGGATTCCGGGAAGGGTGAACATGTTGAATATAGTGAAGAGGCATGTCATTGTGAAGATGAACTGTACTATGACGGTTAATATTTCTAGCCAGGCGATTCAAGAACAAAAGTGCAAGAGGAAGGTTAATCTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

220

Amino Acids

24.15

Weight (kDa)

10.02

Isoelectric Point (pI)

39.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LEA_2 PF03168 99 - 198 1.2e-10 Late embryogenesis abundant protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014279)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G46150
fragaria_vesca FvH4_7g15490
malus_domestica MD01G1072100.v1.1 MD07G1130600.v1.1
prunus_persica Prupe.2G178500_v2.0.a1
pyrus_communis pycom01g10140
rosa_chinensis RchiOBHm_Chr1g0357811
rosa_laevigata RLG00000027994
rosa_multiflora Rmu_co8384079.1_g000001 Rmu_sc0011109.1_g000008
rosa_roxburghii Rroxscaffold_4G00298480
rosa_rugosa Rorug01G0258800
rosa_samantha Rh1AG272700 Rh1BG240000 Rh1CG256600 Rh1DG268300
rosa_wichuraiana Rw1G024340

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 251, 269
AciI CCGC 4 cut(s) 26, 120, 392, 485
AcoI YGGCCR 2 cut(s) 36, 40
AcuI CTGAAG 1 cut(s) 500
AfaI GTAC 2 cut(s) 332, 592
AfiI CCNNNNNNNGG 4 cut(s) 193, 265, 266, 484
AflIII ACRYGT 1 cut(s) 546
AgsI TTSAA 3 cut(s) 328, 553, 626
AjiI CACGTC 1 cut(s) 490
AjnI CCWGG 2 cut(s) 394, 615
AjuI GAANNNNNNNTTGG 2 cut(s) 304, 336
AleI CACNNNNGTG 1 cut(s) 371
AluBI AGCT 6 cut(s) 71, 92, 173, 235, 241, 519
AluI AGCT 6 cut(s) 71, 92, 173, 235, 241, 519
Alw21I GWGCWC 1 cut(s) 94
Ama87I CYCGRG 1 cut(s) 236
AoxI GGCC 3 cut(s) 36, 40, 408
ApeKI GCWGC 4 cut(s) 54, 71, 117, 516
ArsI GACNNNNNNTTYG 2 cut(s) 210, 242
AspS9I GGNCC 3 cut(s) 389, 409, 417
AsuC2I CCSGG 3 cut(s) 35, 267, 534
AsuHPI GGTGA 4 cut(s) 169, 313, 442, 553
AsuNHI GCTAGC 1 cut(s) 28
AvaI CYCGRG 1 cut(s) 236
AvaII GGWCC 2 cut(s) 389, 417
BaeGI GKGCMC 1 cut(s) 272
BanI GGYRCC 2 cut(s) 251, 269
BanII GRGCYC 1 cut(s) 94
Bbv12I GWGCWC 1 cut(s) 94
BbvI GCAGC 4 cut(s) 58, 66, 104, 528
BceAI ACGGC 3 cut(s) 137, 303, 379
BciT130I CCWGG 2 cut(s) 396, 617
BclI TGATCA 1 cut(s) 159
BcnI CCSGG 3 cut(s) 35, 267, 534
BfaI CTAG 5 cut(s) 29, 170, 384, 525, 612
BfmI CTRYAG 1 cut(s) 656
BisI GCNGC 4 cut(s) 55, 72, 118, 517
BlsI GCNGC 4 cut(s) 56, 73, 119, 518
Bme1390I CCNGG 5 cut(s) 35, 267, 396, 534, 617
Bme18I GGWCC 2 cut(s) 389, 417
BmeT110I CYCGRG 1 cut(s) 236
BmgBI CACGTC 1 cut(s) 490
BmgT120I GGNCC 3 cut(s) 389, 409, 417
BmiI GGNNCC 3 cut(s) 198, 253, 271
BmrFI CCNGG 5 cut(s) 35, 267, 396, 534, 617
BmtI GCTAGC 1 cut(s) 32
BpuMI CCSGG 3 cut(s) 35, 267, 534
BsaBI GATNNNNATC 2 cut(s) 164, 431
BsaJI CCNNGG 1 cut(s) 33
Bsc4I CCNNNNNNNGG 4 cut(s) 193, 265, 266, 484
Bse118I RCCGGY 1 cut(s) 38
Bse8I GATNNNNATC 2 cut(s) 164, 431
BseBI CCWGG 2 cut(s) 396, 617
BseDI CCNNGG 1 cut(s) 33
BseGI GGATG 1 cut(s) 432
BseJI GATNNNNATC 2 cut(s) 164, 431
BseLI CCNNNNNNNGG 4 cut(s) 193, 265, 266, 484
BseSI GKGCMC 1 cut(s) 272
BseX3I CGGCCG 1 cut(s) 36
BseXI GCAGC 4 cut(s) 58, 66, 104, 528
BseYI CCCAGC 1 cut(s) 50
Bsh1285I CGRYCG 1 cut(s) 39
BshFI GGCC 3 cut(s) 38, 42, 410
BshNI GGYRCC 2 cut(s) 251, 269
BsiEI CGRYCG 1 cut(s) 39
BsiHKAI GWGCWC 1 cut(s) 94
BsiHKCI CYCGRG 1 cut(s) 236
BsiSI CCGG 4 cut(s) 35, 39, 266, 533
BslI CCNNNNNNNGG 4 cut(s) 193, 265, 266, 484
BsnI GGCC 3 cut(s) 38, 42, 410
BsoBI CYCGRG 1 cut(s) 236
Bsp1286I GDGCHC 2 cut(s) 94, 272
Bsp143I GATC 2 cut(s) 159, 401
BspACI CCGC 4 cut(s) 26, 120, 392, 485
BspANI GGCC 3 cut(s) 38, 42, 410
BspLI GGNNCC 3 cut(s) 198, 253, 271
BspOI GCTAGC 1 cut(s) 32
BspT107I GGYRCC 2 cut(s) 251, 269
BsrFI RCCGGY 1 cut(s) 38
BssAI RCCGGY 1 cut(s) 38
BssECI CCNNGG 1 cut(s) 33
BssMI GATC 2 cut(s) 159, 401
Bst2UI CCWGG 2 cut(s) 396, 617
Bst4CI ACNGT 6 cut(s) 181, 226, 370, 439, 590, 601
Bst6I CTCTTC 1 cut(s) 557
BstC8I GCNNGC 3 cut(s) 18, 30, 40
BstDEI CTNAG 1 cut(s) 405
BstF5I GGATG 1 cut(s) 432
BstKTI GATC 2 cut(s) 162, 404
BstMBI GATC 2 cut(s) 159, 401
BstMCI CGRYCG 1 cut(s) 39
BstMWI GCNNNNNNNGC 1 cut(s) 123
BstNI CCWGG 2 cut(s) 396, 617
BstNSI RCATGY 3 cut(s) 460, 550, 572
BstSCI CCNGG 5 cut(s) 33, 265, 394, 532, 615
BstSFI CTRYAG 1 cut(s) 656
BstSLI GKGCMC 1 cut(s) 272
BstV1I GCAGC 4 cut(s) 58, 66, 104, 528
BstZI CGGCCG 1 cut(s) 36
BsuRI GGCC 3 cut(s) 38, 42, 410
BtrI CACGTC 1 cut(s) 490
BtsCI GGATG 1 cut(s) 432
Cac8I GCNNGC 3 cut(s) 18, 30, 40
Cfr10I RCCGGY 1 cut(s) 38
Cfr13I GGNCC 3 cut(s) 389, 409, 417
Csp6I GTAC 2 cut(s) 331, 591
CviAII CATG 5 cut(s) 211, 421, 457, 547, 569
CviQI GTAC 2 cut(s) 331, 591
DdeI CTNAG 1 cut(s) 405
DpnI GATC 2 cut(s) 161, 403
DpnII GATC 2 cut(s) 159, 401
EaeI YGGCCR 2 cut(s) 36, 40
EagI CGGCCG 1 cut(s) 36
Eam1104I CTCTTC 1 cut(s) 557
EarI CTCTTC 1 cut(s) 557
EciI GGCGGA 2 cut(s) 381, 500
Ecl136II GAGCTC 1 cut(s) 92
EclXI CGGCCG 1 cut(s) 36
Eco24I GRGCYC 1 cut(s) 94
Eco47I GGWCC 2 cut(s) 389, 417
Eco52I CGGCCG 1 cut(s) 36
Eco53kI GAGCTC 1 cut(s) 92
Eco57I CTGAAG 1 cut(s) 500
Eco88I CYCGRG 1 cut(s) 236
EcoICRI GAGCTC 1 cut(s) 92
EcoRII CCWGG 2 cut(s) 394, 615
EcoT38I GRGCYC 1 cut(s) 94
FaeI CATG 5 cut(s) 214, 424, 460, 550, 572
FatI CATG 5 cut(s) 210, 420, 456, 546, 568
FauI CCCGC 1 cut(s) 113
FbaI TGATCA 1 cut(s) 159
Fnu4HI GCNGC 4 cut(s) 55, 72, 118, 517
FokI GGATG 1 cut(s) 439
FriOI GRGCYC 1 cut(s) 94
FseI GGCCGGCC 1 cut(s) 42
Fsp4HI GCNGC 4 cut(s) 55, 72, 118, 517
FspBI CTAG 5 cut(s) 29, 170, 384, 525, 612
GluI GCNGC 4 cut(s) 55, 72, 118, 517
GsaI CCCAGC 1 cut(s) 54
HaeIII GGCC 3 cut(s) 38, 42, 410
HapII CCGG 4 cut(s) 35, 39, 266, 533
Hin1II CATG 5 cut(s) 214, 424, 460, 550, 572
HincII GTYRAC 2 cut(s) 285, 507
HindII GTYRAC 2 cut(s) 285, 507
HinfI GANTC 5 cut(s) 189, 307, 494, 529, 622
HpaI GTTAAC 1 cut(s) 285
HpaII CCGG 4 cut(s) 35, 39, 266, 533
HphI GGTGA 4 cut(s) 169, 313, 442, 553
Hpy166II GTNNAC 3 cut(s) 285, 507, 544
Hpy188I TCNGA 1 cut(s) 188
Hpy188III TCNNGA 1 cut(s) 626
Hpy8I GTNNAC 3 cut(s) 285, 507, 544
Hpy99I CGWCG 2 cut(s) 62, 417
HpyAV CCTTC 4 cut(s) 4, 475, 531, 640
HpyCH4III ACNGT 6 cut(s) 181, 226, 370, 439, 590, 601
HpyCH4IV ACGT 2 cut(s) 315, 489
HpyCH4V TGCA 2 cut(s) 126, 639
HpyF10VI GCNNNNNNNGC 1 cut(s) 123
HpyF3I CTNAG 1 cut(s) 405
HpySE526I ACGT 2 cut(s) 315, 489
Hsp92II CATG 5 cut(s) 214, 424, 460, 550, 572
KroI GCCGGC 1 cut(s) 38
KroNI GCCGGC 1 cut(s) 40
Ksp22I TGATCA 1 cut(s) 159
KspAI GTTAAC 1 cut(s) 285
Kzo9I GATC 2 cut(s) 159, 401
LmnI GCTCC 2 cut(s) 13, 196
Lsp1109I GCAGC 4 cut(s) 58, 66, 104, 528
MaeI CTAG 5 cut(s) 29, 170, 384, 525, 612
MaeII ACGT 2 cut(s) 315, 489
MaeIII GTNAC 2 cut(s) 220, 226
MalI GATC 2 cut(s) 161, 403
MboI GATC 2 cut(s) 159, 401
MboII GAAGA 3 cut(s) 316, 574, 592
MhlI GDGCHC 2 cut(s) 94, 272
MlyI GAGTC 1 cut(s) 198
MmeI TCCRAC 1 cut(s) 492
MnlI CCTC 6 cut(s) 86, 373, 380, 417, 558, 636
MroNI GCCGGC 1 cut(s) 38
MseI TTAA 3 cut(s) 284, 603, 651
MslI CAYNNNNRTG 4 cut(s) 371, 425, 437, 455
MspI CCGG 4 cut(s) 35, 39, 266, 533
MspR9I CCNGG 5 cut(s) 35, 267, 396, 534, 617
MvaI CCWGG 2 cut(s) 396, 617
MwoI GCNNNNNNNGC 1 cut(s) 123
NaeI GCCGGC 1 cut(s) 40
NciI CCSGG 3 cut(s) 35, 267, 534
NdeII GATC 2 cut(s) 159, 401
NgoMIV GCCGGC 1 cut(s) 38
NheI GCTAGC 1 cut(s) 28
NlaIII CATG 5 cut(s) 214, 424, 460, 550, 572
NlaIV GGNNCC 3 cut(s) 198, 253, 271
NmuCI GTSAC 2 cut(s) 220, 226
NspI RCATGY 3 cut(s) 460, 550, 572
OliI CACNNNNGTG 1 cut(s) 371
PaeR7I CTCGAG 1 cut(s) 236
PciI ACATGT 1 cut(s) 546
PdiI GCCGGC 1 cut(s) 40
PfeI GAWTC 4 cut(s) 307, 494, 529, 622
PfoI TCCNGGA 1 cut(s) 532
PkrI GCNGC 4 cut(s) 56, 73, 119, 518
PleI GAGTC 1 cut(s) 197
PpsI GAGTC 1 cut(s) 197
PscI ACATGT 1 cut(s) 546
Psp124BI GAGCTC 1 cut(s) 94
Psp6I CCWGG 2 cut(s) 394, 615
PspFI CCCAGC 1 cut(s) 50
PspGI CCWGG 2 cut(s) 394, 615
PspN4I GGNNCC 3 cut(s) 198, 253, 271
PspPI GGNCC 3 cut(s) 389, 409, 417
PspXI VCTCGAGB 1 cut(s) 236
RigI GGCCGGCC 1 cut(s) 42
RsaI GTAC 2 cut(s) 332, 592
RsaNI GTAC 2 cut(s) 331, 591
RseI CAYNNNNRTG 4 cut(s) 371, 425, 437, 455
SacI GAGCTC 1 cut(s) 94
SaqAI TTAA 3 cut(s) 284, 603, 651
SatI GCNGC 4 cut(s) 55, 72, 118, 517
Sau3AI GATC 2 cut(s) 159, 401
Sau96I GGNCC 3 cut(s) 389, 409, 417
SchI GAGTC 1 cut(s) 198
ScrFI CCNGG 5 cut(s) 35, 267, 396, 534, 617
SduI GDGCHC 2 cut(s) 94, 272
SfcI CTRYAG 1 cut(s) 656
Sfr274I CTCGAG 1 cut(s) 236
SinI GGWCC 2 cut(s) 389, 417
SlaI CTCGAG 1 cut(s) 236
SmiMI CAYNNNNRTG 4 cut(s) 371, 425, 437, 455
SmlI CTYRAG 1 cut(s) 236
SmoI CTYRAG 1 cut(s) 236
SsiI CCGC 4 cut(s) 26, 120, 392, 485
SspI AATATT 1 cut(s) 607
SspMI CTAG 5 cut(s) 29, 170, 384, 525, 612
SstI GAGCTC 1 cut(s) 94
StyD4I CCNGG 5 cut(s) 33, 265, 394, 532, 615
TaaI ACNGT 6 cut(s) 181, 226, 370, 439, 590, 601
TaiI ACGT 2 cut(s) 318, 492
TaqI TCGA 2 cut(s) 94, 237
TatI WGTACW 2 cut(s) 330, 590
TfiI GAWTC 4 cut(s) 307, 494, 529, 622
Tru1I TTAA 3 cut(s) 284, 603, 651
Tru9I TTAA 3 cut(s) 284, 603, 651
TseFI GTSAC 2 cut(s) 220, 226
TseI GCWGC 4 cut(s) 54, 71, 117, 516
Tsp45I GTSAC 2 cut(s) 220, 226
TspDTI ATGAA 5 cut(s) 81, 97, 227, 443, 599
TspGWI ACGGA 1 cut(s) 430
VpaK11BI GGWCC 2 cut(s) 389, 417
XceI RCATGY 3 cut(s) 460, 550, 572
XhoI CTCGAG 1 cut(s) 236
XspI CTAG 5 cut(s) 29, 170, 384, 525, 612
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.