Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004117

Physical Location & Seq

Genomic Coordinates Forward (+)

19000180 .. 19003403

Gene Structure 3224 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G46270.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1149 bp

ATGGGAAATAGCAGCGAGGAACCAAAGCCTCCTACCAAATCAGATAAACCATCTTCACCCCCGGTGGATCAAACAAATGTTCATGTCTACCCTGATTGGGCAGCTATGCAGGCATATTATGGTCCAAGAGTAGCAATGCCTCCTTATTACAATTCAGCTATGGCTGCATCTGGTCATCCTCCTCCTCCTTACATGTGGAATCCTCAGCATATGATGTCACCATATGGAGCACCCTATGCTGCTGTTTATCCTCATGGAGGAGGAGTTTACGCTCATCCCGGTATTCCCATGGGATCACTGCCTCAAGGTCAAAAGGATCCACCTTTAACAACTCCGGGGACGCTTTTGAGCATCGACACTCCTACTAAATCTACAGGGAACACAGACAATGGATTGATGAAGAAGCTGAAAGAGTTTGATGGGCTTGCTATGTCTCTAGGAAATGGGAATCCTGAAAATGGTGCAGATGAACATAAACGATCACGGAACAGCTCAGAAACTGATGGTTCTACTGATGGAAGTGATGGGAATACAACTGGGGCAGATGAACCGAAACTTAAAAGAAGTCGAGAGGGAACTCCAACAAAAGATGGGAAACAATTGGTTCAAGCTAGCTCATTTCATTCTGTTTCTCCGTCAAGTGGTGATACCGGCGTAAAACTCATTCAAGGATCTGGAGCTATACTCTCTCCTGGTGTAAGTGCAAATTCCAACCCCTTCATGTCACAATCTTTAGCCATGGTTCCTCCTGAAACTTGGCTTCAGAACGAGAGAGAACTGAAACGGGAGCGAAGGAAACAGTCTAATAGAGAATCTGCTAGAAGGTCAAGATTAAGGAAACAGGCCGAGACAGAAGAACTTGCTAGGAAAGTGGAAGCCTTGACAGCCGAAAACATGGCATTAAGATCTGAACTAAACCAACTTAATGAGAAATCTGATAAACTAAGAGGAGCAAATGCAACCTTGTTGGACAAACTGAAATGCTCGGAACCCGAAAAGAGAGTCCCCGCAAATATGTTGTCTAGAGTTAAGAACTCAGGAGCTGGAGATAAGAACAAGAACCAAGGAGACAATGATTCTAACTCTACAAGCAAATTGCATCAACTGCTCGATACGAAGCCTCGAGCTAAAGCAGTAGCTGCAGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006082 GO:0006355 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009628 GO:0009637 GO:0009719 GO:0009725 GO:0009737 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0016143 GO:0019219 GO:0019222 GO:0019748 GO:0019757 GO:0019760 GO:0031323 GO:0031326 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043565 GO:0044212 GO:0044237 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0097159 GO:0097305 GO:0140110 GO:1901135 GO:1901363 GO:1901564 GO:1901657 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MFMR MFMR_assoc bZIP_1

Protein Analysis

382

Amino Acids

41.11

Weight (kDa)

9.2

Isoelectric Point (pI)

50.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MFMR	PF07777	5 - 96	1.6e-30	G-box binding protein MFMR
MFMR_assoc	PF16596	129 - 231	4.3e-13	Disordered region downstream of MFMR
bZIP_1	PF00170	234 - 296	3.4e-21	bZIP transcription factor
bZIP_2	PF07716	236 - 286	4e-09	Basic region leucine zipper

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004117)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46270 AT2G46270 AT2G46270 AT2G46270
fragaria_vesca	FvH4_7g15810 FvH4_7g15810 FvH4_7g15810 FvH4_7g15810
malus_domestica	MD01G1074700.v1.1 MD07G1143800.v1.1
prunus_persica	Prupe.2G182800_v2.0.a1 Prupe.2G182800_v2.0.a1 Prupe.2G182800_v2.0.a1 Prupe.2G182800_v2.0.a1 Prupe.2G182800_v2.0.a1 Prupe.2G182800_v2.0.a1 Prupe.2G182800_v2.0.a1 Prupe.2G182800_v2.0.a1
pyrus_communis	pycom01g10380 pycom07g14230
rosa_chinensis	RchiOBHm_Chr1g0358601
rosa_laevigata	RLG00000027942
rosa_multiflora	Rmu_sc0001609.1_g000020
rosa_roxburghii	Rroxscaffold_4G00297760
rosa_rugosa	Rorug01G0262800 Rorug01G0262800 Rorug01G0262800 Rorug01G0262900
rosa_samantha	Rh1AG278000 Rh1BG244500 Rh1CG261400 Rh1DG272800
rosa_wichuraiana	Rw1G024670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	87
AciI	CCGC	1 cut(s)	1008
AclWI	GGATC	5 cut(s)	75, 301, 311, 324, 679
AcsI	RAATTY	1 cut(s)	706
AcuI	CTGAAG	1 cut(s)	746
AfiI	CCNNNNNNNGG	4 cut(s)	97, 257, 458, 641
AflIII	ACRYGT	1 cut(s)	192
AgsI	TTSAA	2 cut(s)	608, 668
AjnI	CCWGG	1 cut(s)	691
Alw21I	GWGCWC	1 cut(s)	232
Alw26I	GTCTC	3 cut(s)	438, 842, 1062
AlwI	GGATC	5 cut(s)	75, 301, 311, 324, 679
AlwNI	CAGNNNCTG	3 cut(s)	500, 1043, 1139
Ama87I	CYCGRG	1 cut(s)	1122
AoxI	GGCC	1 cut(s)	843
ApeKI	GCWGC	5 cut(s)	12, 101, 164, 239, 1139
ApoI	RAATTY	1 cut(s)	706
ArsI	GACNNNNNNTTYG	4 cut(s)	987, 1004, 1019, 1036
AspS9I	GGNCC	1 cut(s)	122
AsuC2I	CCSGG	3 cut(s)	62, 279, 336
AsuHPI	GGTGA	3 cut(s)	48, 210, 656
AsuNHI	GCTAGC	1 cut(s)	611
AvaI	CYCGRG	1 cut(s)	1122
AvaII	GGWCC	1 cut(s)	122
BaeI	ACNNNNGTAYC	2 cut(s)	639, 672
BamHI	GGATCC	1 cut(s)	316
Bbv12I	GWGCWC	1 cut(s)	232
BbvCI	CCTCAGC	1 cut(s)	204
BbvI	GCAGC	5 cut(s)	24, 113, 151, 226, 1126
BccI	CCATC	6 cut(s)	58, 413, 497, 509, 518, 584
BciT130I	CCWGG	1 cut(s)	693
BcnI	CCSGG	3 cut(s)	62, 279, 336
BcoDI	GTCTC	3 cut(s)	438, 842, 1062
BfaI	CTAG	5 cut(s)	437, 612, 819, 864, 1023
BfmI	CTRYAG	2 cut(s)	372, 1140
BglII	AGATCT	1 cut(s)	905
BisI	GCNGC	5 cut(s)	13, 102, 165, 240, 1140
BlsI	GCNGC	5 cut(s)	14, 103, 166, 241, 1141
Bme1390I	CCNGG	4 cut(s)	62, 279, 336, 693
Bme18I	GGWCC	1 cut(s)	122
BmeT110I	CYCGRG	1 cut(s)	1122
BmgT120I	GGNCC	1 cut(s)	122
BmiI	GGNNCC	4 cut(s)	21, 318, 744, 990
BmrFI	CCNGG	4 cut(s)	62, 279, 336, 693
BmrI	ACTGGG	1 cut(s)	546
BmsI	GCATC	3 cut(s)	176, 360, 1108
BmtI	GCTAGC	1 cut(s)	615
BmuI	ACTGGG	1 cut(s)	546
BplI	GAGNNNNNCTC	2 cut(s)	669, 701
BpmI	CTGGAG	2 cut(s)	696, 1065
Bpu10I	CCTNAGC	1 cut(s)	204
BpuEI	CTTGAG	1 cut(s)	288
BpuMI	CCSGG	3 cut(s)	62, 279, 336
BsaJI	CCNNGG	5 cut(s)	60, 288, 335, 738, 1063
BsaXI	ACNNNNNCTCC	2 cut(s)	249, 279
Bsc4I	CCNNNNNNNGG	4 cut(s)	97, 257, 458, 641
Bse118I	RCCGGY	1 cut(s)	650
Bse1I	ACTGG	1 cut(s)	541
Bse3DI	GCAATG	1 cut(s)	141
BseBI	CCWGG	1 cut(s)	693
BseDI	CCNNGG	5 cut(s)	60, 288, 335, 738, 1063
BseGI	GGATG	2 cut(s)	175, 274
BseLI	CCNNNNNNNGG	4 cut(s)	97, 257, 458, 641
BseMI	GCAATG	1 cut(s)	141
BseMII	CTCAG	3 cut(s)	218, 507, 1050
BseNI	ACTGG	1 cut(s)	541
BseRI	GAGGAG	5 cut(s)	171, 174, 273, 276, 963
BseXI	GCAGC	5 cut(s)	24, 113, 151, 226, 1126
BsgI	GTGCAG	1 cut(s)	483
BshFI	GGCC	1 cut(s)	845
BsiHKAI	GWGCWC	1 cut(s)	232
BsiHKCI	CYCGRG	1 cut(s)	1122
BsiSI	CCGG	4 cut(s)	62, 279, 335, 651
BslFI	GGGAC	2 cut(s)	352, 989
BslI	CCNNNNNNNGG	4 cut(s)	97, 257, 458, 641
BsmAI	GTCTC	3 cut(s)	438, 842, 1062
BsmFI	GGGAC	2 cut(s)	352, 989
BsnI	GGCC	1 cut(s)	845
BsoBI	CYCGRG	1 cut(s)	1122
Bsp1286I	GDGCHC	1 cut(s)	232
Bsp143I	GATC	6 cut(s)	67, 293, 316, 479, 671, 905
Bsp19I	CCATGG	2 cut(s)	288, 738
BspACI	CCGC	1 cut(s)	1008
BspANI	GGCC	1 cut(s)	845
BspCNI	CTCAG	3 cut(s)	217, 506, 1049
BspLI	GGNNCC	4 cut(s)	21, 318, 744, 990
BspMAI	CTGCAG	1 cut(s)	1144
BspOI	GCTAGC	1 cut(s)	615
BspPI	GGATC	5 cut(s)	75, 301, 311, 324, 679
BsrDI	GCAATG	1 cut(s)	141
BsrFI	RCCGGY	1 cut(s)	650
BsrI	ACTGG	1 cut(s)	541
BssAI	RCCGGY	1 cut(s)	650
BssECI	CCNNGG	5 cut(s)	60, 288, 335, 738, 1063
BssMI	GATC	6 cut(s)	67, 293, 316, 479, 671, 905
BssT1I	CCWWGG	3 cut(s)	288, 738, 1063
Bst2UI	CCWGG	1 cut(s)	693
Bst4CI	ACNGT	1 cut(s)	801
BstAPI	GCANNNNNTGC	3 cut(s)	236, 1105, 1139
BstC8I	GCNNGC	4 cut(s)	111, 426, 613, 1144
BstDEI	CTNAG	4 cut(s)	204, 493, 944, 1036
BstDSI	CCRYGG	2 cut(s)	288, 738
BstENI	CCTNNNNNAGG	1 cut(s)	255
BstF5I	GGATG	2 cut(s)	175, 274
BstKTI	GATC	6 cut(s)	70, 296, 319, 482, 674, 908
BstMAI	GTCTC	3 cut(s)	438, 842, 1062
BstMBI	GATC	6 cut(s)	67, 293, 316, 479, 671, 905
BstMWI	GCNNNNNNNGC	6 cut(s)	110, 164, 236, 884, 1105, 1139
BstNI	CCWGG	1 cut(s)	693
BstNSI	RCATGY	1 cut(s)	196
BstSCI	CCNGG	4 cut(s)	60, 277, 334, 691
BstSFI	CTRYAG	2 cut(s)	372, 1140
BstV1I	GCAGC	5 cut(s)	24, 113, 151, 226, 1126
BstX2I	RGATCY	3 cut(s)	316, 671, 905
BstYI	RGATCY	3 cut(s)	316, 671, 905
BsuRI	GGCC	1 cut(s)	845
BtgI	CCRYGG	2 cut(s)	288, 738
BtsCI	GGATG	2 cut(s)	175, 274
BtsI	GCAGTG	1 cut(s)	296
BtsIMutI	CAGTG	1 cut(s)	296
Cac8I	GCNNGC	4 cut(s)	111, 426, 613, 1144
CaiI	CAGNNNCTG	3 cut(s)	500, 1043, 1139
Cfr10I	RCCGGY	1 cut(s)	650
Cfr13I	GGNCC	1 cut(s)	122
CseI	GACGC	1 cut(s)	349
CviAII	CATG	7 cut(s)	83, 193, 254, 289, 721, 739, 895
DdeI	CTNAG	4 cut(s)	204, 493, 944, 1036
DpnI	GATC	6 cut(s)	69, 295, 318, 481, 673, 907
DpnII	GATC	6 cut(s)	67, 293, 316, 479, 671, 905
Eco130I	CCWWGG	3 cut(s)	288, 738, 1063
Eco47I	GGWCC	1 cut(s)	122
Eco57I	CTGAAG	1 cut(s)	746
Eco88I	CYCGRG	1 cut(s)	1122
EcoNI	CCTNNNNNAGG	1 cut(s)	255
EcoRII	CCWGG	1 cut(s)	691
EcoT14I	CCWWGG	3 cut(s)	288, 738, 1063
ErhI	CCWWGG	3 cut(s)	288, 738, 1063
FaeI	CATG	7 cut(s)	86, 196, 257, 292, 724, 742, 898
FaqI	GGGAC	2 cut(s)	352, 989
FatI	CATG	7 cut(s)	82, 192, 253, 288, 720, 738, 894
FauI	CCCGC	1 cut(s)	1015
FauNDI	CATATG	2 cut(s)	210, 223
FblI	GTMKAC	1 cut(s)	87
Fnu4HI	GCNGC	5 cut(s)	13, 102, 165, 240, 1140
FokI	GGATG	2 cut(s)	162, 261
Fsp4HI	GCNGC	5 cut(s)	13, 102, 165, 240, 1140
FspBI	CTAG	5 cut(s)	437, 612, 819, 864, 1023
GluI	GCNGC	5 cut(s)	13, 102, 165, 240, 1140
GsuI	CTGGAG	2 cut(s)	696, 1065
HaeIII	GGCC	1 cut(s)	845
HapII	CCGG	4 cut(s)	62, 279, 335, 651
HgaI	GACGC	1 cut(s)	349
Hin1II	CATG	7 cut(s)	86, 196, 257, 292, 724, 742, 898
HinfI	GANTC	5 cut(s)	199, 448, 812, 1002, 1076
HpaII	CCGG	4 cut(s)	62, 279, 335, 651
HphI	GGTGA	3 cut(s)	48, 210, 656
Hpy166II	GTNNAC	2 cut(s)	88, 268
Hpy188I	TCNGA	6 cut(s)	43, 496, 765, 910, 937, 988
Hpy188III	TCNNGA	7 cut(s)	452, 569, 675, 749, 828, 1023, 1038
Hpy8I	GTNNAC	2 cut(s)	88, 268
HpyAV	CCTTC	3 cut(s)	727, 786, 816
HpyCH4III	ACNGT	1 cut(s)	801
HpyCH4V	TGCA	7 cut(s)	109, 167, 464, 704, 959, 1099, 1142
HpyF10VI	GCNNNNNNNGC	6 cut(s)	110, 164, 236, 884, 1105, 1139
HpyF3I	CTNAG	4 cut(s)	204, 493, 944, 1036
Hsp92II	CATG	7 cut(s)	86, 196, 257, 292, 724, 742, 898
Kzo9I	GATC	6 cut(s)	67, 293, 316, 479, 671, 905
LmnI	GCTCC	5 cut(s)	227, 677, 787, 950, 1040
Lsp1109I	GCAGC	5 cut(s)	24, 113, 151, 226, 1126
LweI	GCATC	3 cut(s)	176, 360, 1108
MaeI	CTAG	5 cut(s)	437, 612, 819, 864, 1023
MaeIII	GTNAC	2 cut(s)	216, 723
MalI	GATC	6 cut(s)	69, 295, 318, 481, 673, 907
MboI	GATC	6 cut(s)	67, 293, 316, 479, 671, 905
MboII	GAAGA	3 cut(s)	45, 412, 866
MfeI	CAATTG	1 cut(s)	599
MflI	RGATCY	3 cut(s)	316, 671, 905
MhlI	GDGCHC	1 cut(s)	232
MluCI	AATT	4 cut(s)	151, 599, 706, 1094
MlyI	GAGTC	1 cut(s)	1011
MmeI	TCCRAC	3 cut(s)	605, 735, 948
MseI	TTAA	6 cut(s)	326, 558, 833, 902, 924, 1029
MspI	CCGG	4 cut(s)	62, 279, 335, 651
MspR9I	CCNGG	4 cut(s)	62, 279, 336, 693
MunI	CAATTG	1 cut(s)	599
MvaI	CCWGG	1 cut(s)	693
MwoI	GCNNNNNNNGC	6 cut(s)	110, 164, 236, 884, 1105, 1139
NciI	CCSGG	3 cut(s)	62, 279, 336
NcoI	CCATGG	2 cut(s)	288, 738
NdeI	CATATG	2 cut(s)	210, 223
NdeII	GATC	6 cut(s)	67, 293, 316, 479, 671, 905
NheI	GCTAGC	1 cut(s)	611
NlaIII	CATG	7 cut(s)	86, 196, 257, 292, 724, 742, 898
NlaIV	GGNNCC	4 cut(s)	21, 318, 744, 990
NmeAIII	GCCGAG	1 cut(s)	871
NmuCI	GTSAC	2 cut(s)	216, 723
NspI	RCATGY	1 cut(s)	196
PaeR7I	CTCGAG	1 cut(s)	1122
PciI	ACATGT	1 cut(s)	192
PfeI	GAWTC	4 cut(s)	199, 448, 812, 1076
PkrI	GCNGC	5 cut(s)	14, 103, 166, 241, 1141
PleI	GAGTC	1 cut(s)	1010
PpsI	GAGTC	1 cut(s)	1010
PscI	ACATGT	1 cut(s)	192
Psp6I	CCWGG	1 cut(s)	691
PspGI	CCWGG	1 cut(s)	691
PspN4I	GGNNCC	4 cut(s)	21, 318, 744, 990
PspPI	GGNCC	1 cut(s)	122
PspXI	VCTCGAGB	1 cut(s)	1122
PstI	CTGCAG	1 cut(s)	1144
PstNI	CAGNNNCTG	3 cut(s)	500, 1043, 1139
PsuI	RGATCY	3 cut(s)	316, 671, 905
SaqAI	TTAA	6 cut(s)	326, 558, 833, 902, 924, 1029
SatI	GCNGC	5 cut(s)	13, 102, 165, 240, 1140
Sau3AI	GATC	6 cut(s)	67, 293, 316, 479, 671, 905
Sau96I	GGNCC	1 cut(s)	122
SchI	GAGTC	1 cut(s)	1011
ScrFI	CCNGG	4 cut(s)	62, 279, 336, 693
SduI	GDGCHC	1 cut(s)	232
SfaNI	GCATC	3 cut(s)	176, 360, 1108
SfcI	CTRYAG	2 cut(s)	372, 1140
Sfr274I	CTCGAG	1 cut(s)	1122
SinI	GGWCC	1 cut(s)	122
SlaI	CTCGAG	1 cut(s)	1122
SmlI	CTYRAG	2 cut(s)	303, 1122
SmoI	CTYRAG	2 cut(s)	303, 1122
Sse9I	AATT	4 cut(s)	151, 599, 706, 1094
SsiI	CCGC	1 cut(s)	1008
SspMI	CTAG	5 cut(s)	437, 612, 819, 864, 1023
StyD4I	CCNGG	4 cut(s)	60, 277, 334, 691
StyI	CCWWGG	3 cut(s)	288, 738, 1063
TaaI	ACNGT	1 cut(s)	801
TaqI	TCGA	4 cut(s)	354, 568, 1110, 1123
TasI	AATT	4 cut(s)	151, 599, 706, 1094
TfiI	GAWTC	4 cut(s)	199, 448, 812, 1076
Tru1I	TTAA	6 cut(s)	326, 558, 833, 902, 924, 1029
Tru9I	TTAA	6 cut(s)	326, 558, 833, 902, 924, 1029
TscAI	CASTG	1 cut(s)	303
TseFI	GTSAC	2 cut(s)	216, 723
TseI	GCWGC	5 cut(s)	12, 101, 164, 239, 1139
Tsp45I	GTSAC	2 cut(s)	216, 723
TspDTI	ATGAA	6 cut(s)	71, 413, 483, 561, 611, 709
TspGWI	ACGGA	2 cut(s)	499, 624
TspRI	CASTG	1 cut(s)	303
VpaK11BI	GGWCC	1 cut(s)	122
XagI	CCTNNNNNAGG	1 cut(s)	255
XapI	RAATTY	1 cut(s)	706
XbaI	TCTAGA	1 cut(s)	1022
XceI	RCATGY	1 cut(s)	196
XhoI	CTCGAG	1 cut(s)	1122
XmiI	GTMKAC	1 cut(s)	87
XspI	CTAG	5 cut(s)	437, 612, 819, 864, 1023

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.