Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0004117

Physical Location & Seq

Genomic Coordinates Reverse (-)

37262304 .. 37267209

Gene Structure 4906 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0262800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1074 bp

ATGTTGGAGTTCATCCATACGGCTCCATGTATGGATTGGTTGAACGGGCTTGAACCTGACATGTCCGTGAAGGTCCTAACTTGTTTGGACAATCCAAAGGATCTTGTTCGAATTAGTACTGTCTCATGCACTTGGCGTCAAATTGTGGTAGAAAATGGTCTGTGTAAGAAGCTTTGCTTGAGAATGTTTCCTCAGTTATCCAGAGTTGGTCATGTGATCGAGTCAAACAACTCTGATGCCAAAGATTACGCAGAAGTTGGATCTAGCAATTCAAAGGAATGGGACACGTTGGAAAGGGAGCATAGAGTCTATGCCTTCTTAGCTCATGCTTGTACATCTTTCCCTGAGGGGGATTGCATTTCAAAGGCAATCAGTGCTTCCAGCACTGACAATTATCCAGAGGAAAGCATTGAACATACTCTAGTGTTTAGTGTTGCGCGGAGAGCTTCATACTGGTCAAGTAAAGGCCAAAAGAACCCTGCAGTGCCTGAGATGCTGACATACAAGTTGAAGTCTGATTTTGTTATAATTACTGAAATCAACATACATCCTTTCAAAGCTTACTTCCAGCATGGGTCACCCATATATTCTGCCCGTGGTGTTCGATTTCGTATGGGGCATGCCAAATTCCCTATTGTAGAGATTGACCCCATGGAGGAATCATGCCATGACGACAAGTTTGAGTGGACTCACACTTCGCAAGTGTTCCCAATGGCTCAGAAAAACTGCTTGCAGACATTCAAGCTTCCAGAACCAGTTCTTTGCATAGGTGGATTCTTGCAGATTGAGTTAGTGGGGAGGGTTCAGAGACAAGAAATGGATGACCTGTTCTATATATGCGTGTCTCACGTTCAAGTCAAGGGGAAGTCACTAGGACCTGCATTTAGTGTTGAAACCAATGTACCATCTGGGCTGTTTGTGTTGAAGAGACAAACTAAGTTCAACCAACCAAGCTTACCTGAGAATGAGTCCAATGCTATCTCCAATGGTGATTTGGAGAGACACGGTAGAGAAATGCTGCCCATTGTGAATGTGCTGCGTGCAAATGTAGATTTTGAGGAATATTATGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006082 GO:0006355 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009628 GO:0009637 GO:0009719 GO:0009725 GO:0009737 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0016143 GO:0019219 GO:0019222 GO:0019748 GO:0019757 GO:0019760 GO:0031323 GO:0031326 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043565 GO:0044212 GO:0044237 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0097159 GO:0097305 GO:0140110 GO:1901135 GO:1901363 GO:1901564 GO:1901657 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MFMR MFMR_assoc bZIP_1

Protein Analysis

357

Amino Acids

40.59

Weight (kDa)

5.78

Isoelectric Point (pI)

46.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box-like	PF12937	20 - 61	9.4e-06	F-box-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004117)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46270 AT2G46270 AT2G46270 AT2G46270
fragaria_vesca	FvH4_7g15810 FvH4_7g15810 FvH4_7g15810 FvH4_7g15810
malus_domestica	MD01G1074700.v1.1 MD07G1143800.v1.1
prunus_persica	Prupe.2G182800_v2.0.a1 Prupe.2G182800_v2.0.a1 Prupe.2G182800_v2.0.a1 Prupe.2G182800_v2.0.a1 Prupe.2G182800_v2.0.a1 Prupe.2G182800_v2.0.a1 Prupe.2G182800_v2.0.a1 Prupe.2G182800_v2.0.a1
pyrus_communis	pycom01g10380 pycom07g14230
rosa_chinensis	RchiOBHm_Chr1g0358601
rosa_laevigata	RLG00000027942
rosa_multiflora	Rmu_sc0001609.1_g000020
rosa_roxburghii	Rroxscaffold_4G00297760
rosa_rugosa	Rorug01G0262800 Rorug01G0262800 Rorug01G0262800 Rorug01G0262900
rosa_samantha	Rh1AG278000 Rh1BG244500 Rh1CG261400 Rh1DG272800
rosa_wichuraiana	Rw1G024670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	527
Acc36I	ACCTGC	1 cut(s)	886
AccII	CGCG	1 cut(s)	439
AciI	CCGC	1 cut(s)	439
AclWI	GGATC	2 cut(s)	108, 268
AcsI	RAATTY	1 cut(s)	626
AcyI	GRCGYC	1 cut(s)	136
AfaI	GTAC	3 cut(s)	118, 334, 903
AfiI	CCNNNNNNNGG	2 cut(s)	349, 655
AflIII	ACRYGT	2 cut(s)	60, 285
AloI	GAACNNNNNNTCC	2 cut(s)	812, 844
AluBI	AGCT	6 cut(s)	172, 323, 446, 560, 745, 954
AluI	AGCT	6 cut(s)	172, 323, 446, 560, 745, 954
Alw26I	GTCTC	5 cut(s)	127, 802, 849, 922, 994
AlwI	GGATC	2 cut(s)	108, 268
AlwNI	CAGNNNCTG	1 cut(s)	488
AoxI	GGCC	1 cut(s)	466
ApeKI	GCWGC	2 cut(s)	1018, 1036
ApoI	RAATTY	1 cut(s)	626
ArsI	GACNNNNNNTTYG	4 cut(s)	662, 679, 694, 711
Asp700I	GAANNNNTTC	1 cut(s)	756
AspLEI	GCGC	1 cut(s)	439
AspS9I	GGNCC	2 cut(s)	73, 875
AsuHPI	GGTGA	2 cut(s)	570, 1001
AsuII	TTCGAA	1 cut(s)	109
AvaII	GGWCC	2 cut(s)	73, 875
AxyI	CCTNAGG	1 cut(s)	345
BaeI	ACNNNNGTAYC	2 cut(s)	885, 918
BbvI	GCAGC	2 cut(s)	1005, 1023
BccI	CCATC	1 cut(s)	913
BceAI	ACGGC	1 cut(s)	36
BcoDI	GTCTC	5 cut(s)	127, 802, 849, 922, 994
BfaI	CTAG	3 cut(s)	264, 422, 872
BfmI	CTRYAG	1 cut(s)	480
BfuAI	ACCTGC	1 cut(s)	886
BisI	GCNGC	2 cut(s)	1019, 1037
BlsI	GCNGC	2 cut(s)	1020, 1038
BmcAI	AGTACT	1 cut(s)	118
Bme18I	GGWCC	2 cut(s)	73, 875
BmgT120I	GGNCC	2 cut(s)	73, 875
BmiI	GGNNCC	1 cut(s)	24
BmsI	GCATC	2 cut(s)	226, 483
Bpu14I	TTCGAA	1 cut(s)	109
BpuEI	CTTGAG	1 cut(s)	199
BsaHI	GRCGYC	1 cut(s)	136
BsaJI	CCNNGG	2 cut(s)	595, 651
Bsc4I	CCNNNNNNNGG	2 cut(s)	349, 655
Bse1I	ACTGG	2 cut(s)	458, 755
Bse21I	CCTNAGG	1 cut(s)	345
BseDI	CCNNGG	2 cut(s)	595, 651
BseGI	GGATG	3 cut(s)	12, 547, 826
BseLI	CCNNNNNNNGG	2 cut(s)	349, 655
BseMII	CTCAG	5 cut(s)	206, 336, 480, 731, 951
BseNI	ACTGG	2 cut(s)	458, 755
BseXI	GCAGC	2 cut(s)	1005, 1023
Bsh1236I	CGCG	1 cut(s)	439
BshFI	GGCC	1 cut(s)	468
BslFI	GGGAC	1 cut(s)	296
BslI	CCNNNNNNNGG	2 cut(s)	349, 655
BsmAI	GTCTC	5 cut(s)	127, 802, 849, 922, 994
BsmFI	GGGAC	1 cut(s)	296
BsnI	GGCC	1 cut(s)	468
Bsp119I	TTCGAA	1 cut(s)	109
Bsp1407I	TGTACA	1 cut(s)	332
Bsp143I	GATC	3 cut(s)	100, 216, 260
Bsp19I	CCATGG	1 cut(s)	651
BspACI	CCGC	1 cut(s)	439
BspANI	GGCC	1 cut(s)	468
BspCNI	CTCAG	5 cut(s)	205, 337, 481, 730, 952
BspFNI	CGCG	1 cut(s)	439
BspLI	GGNNCC	1 cut(s)	24
BspMAI	CTGCAG	1 cut(s)	484
BspMI	ACCTGC	1 cut(s)	886
BspPI	GGATC	2 cut(s)	108, 268
BspT104I	TTCGAA	1 cut(s)	109
BsrGI	TGTACA	1 cut(s)	332
BsrI	ACTGG	2 cut(s)	458, 755
BssECI	CCNNGG	2 cut(s)	595, 651
BssMI	GATC	3 cut(s)	100, 216, 260
BssNI	GRCGYC	1 cut(s)	136
BssT1I	CCWWGG	1 cut(s)	651
Bst4CI	ACNGT	2 cut(s)	121, 1007
Bst6I	CTCTTC	1 cut(s)	920
BstACI	GRCGYC	1 cut(s)	136
BstAPI	GCANNNNNTGC	1 cut(s)	374
BstAUI	TGTACA	1 cut(s)	332
BstBI	TTCGAA	1 cut(s)	109
BstC8I	GCNNGC	3 cut(s)	621, 731, 1041
BstDEI	CTNAG	7 cut(s)	192, 319, 345, 489, 717, 936, 960
BstDSI	CCRYGG	2 cut(s)	595, 651
BstEII	GGTNACC	1 cut(s)	576
BstF5I	GGATG	3 cut(s)	12, 547, 826
BstFNI	CGCG	1 cut(s)	439
BstHHI	GCGC	1 cut(s)	439
BstKTI	GATC	3 cut(s)	103, 219, 263
BstMAI	GTCTC	5 cut(s)	127, 802, 849, 922, 994
BstMBI	GATC	3 cut(s)	100, 216, 260
BstMWI	GCNNNNNNNGC	4 cut(s)	320, 374, 443, 493
BstNSI	RCATGY	2 cut(s)	64, 623
BstPI	GGTNACC	1 cut(s)	576
BstSFI	CTRYAG	1 cut(s)	480
BstUI	CGCG	1 cut(s)	439
BstV1I	GCAGC	2 cut(s)	1005, 1023
BstX2I	RGATCY	2 cut(s)	100, 260
BstYI	RGATCY	2 cut(s)	100, 260
Bsu36I	CCTNAGG	1 cut(s)	345
BsuRI	GGCC	1 cut(s)	468
BtgI	CCRYGG	2 cut(s)	595, 651
BtsCI	GGATG	3 cut(s)	12, 547, 826
BtsI	GCAGTG	1 cut(s)	489
BtsIMutI	CAGTG	3 cut(s)	379, 384, 489
BveI	ACCTGC	1 cut(s)	886
Cac8I	GCNNGC	3 cut(s)	621, 731, 1041
CaiI	CAGNNNCTG	1 cut(s)	488
CfoI	GCGC	1 cut(s)	439
Cfr13I	GGNCC	2 cut(s)	73, 875
CseI	GACGC	1 cut(s)	125
Csp6I	GTAC	3 cut(s)	117, 333, 902
CviQI	GTAC	3 cut(s)	117, 333, 902
DdeI	CTNAG	7 cut(s)	192, 319, 345, 489, 717, 936, 960
DpnI	GATC	3 cut(s)	102, 218, 262
DpnII	GATC	3 cut(s)	100, 216, 260
Eam1104I	CTCTTC	1 cut(s)	920
EarI	CTCTTC	1 cut(s)	920
Eco130I	CCWWGG	1 cut(s)	651
Eco47I	GGWCC	2 cut(s)	73, 875
Eco81I	CCTNAGG	1 cut(s)	345
Eco91I	GGTNACC	1 cut(s)	576
EcoO109I	RGGNCCY	2 cut(s)	73, 875
EcoO65I	GGTNACC	1 cut(s)	576
EcoT14I	CCWWGG	1 cut(s)	651
ErhI	CCWWGG	1 cut(s)	651
FalI	AAGNNNNNCTT	2 cut(s)	161, 193
FaqI	GGGAC	1 cut(s)	296
Fnu4HI	GCNGC	2 cut(s)	1019, 1037
FokI	GGATG	2 cut(s)	534, 833
Fsp4HI	GCNGC	2 cut(s)	1019, 1037
FspBI	CTAG	3 cut(s)	264, 422, 872
GlaI	GCGC	1 cut(s)	438
GluI	GCNGC	2 cut(s)	1019, 1037
HaeIII	GGCC	1 cut(s)	468
HgaI	GACGC	1 cut(s)	125
HhaI	GCGC	1 cut(s)	439
Hin1I	GRCGYC	1 cut(s)	136
Hin6I	GCGC	1 cut(s)	437
HinP1I	GCGC	1 cut(s)	437
HindIII	AAGCTT	4 cut(s)	170, 558, 743, 952
HinfI	GANTC	6 cut(s)	221, 306, 659, 688, 774, 968
HphI	GGTGA	2 cut(s)	570, 1001
Hpy166II	GTNNAC	1 cut(s)	687
Hpy188I	TCNGA	4 cut(s)	235, 517, 720, 807
Hpy188III	TCNNGA	3 cut(s)	201, 398, 749
Hpy8I	GTNNAC	1 cut(s)	687
HpyAV	CCTTC	2 cut(s)	64, 325
HpyCH4III	ACNGT	2 cut(s)	121, 1007
HpyCH4IV	ACGT	2 cut(s)	287, 849
HpyCH4V	TGCA	8 cut(s)	129, 357, 482, 733, 765, 781, 881, 1043
HpyF10VI	GCNNNNNNNGC	4 cut(s)	320, 374, 443, 493
HpyF3I	CTNAG	7 cut(s)	192, 319, 345, 489, 717, 936, 960
HpySE526I	ACGT	2 cut(s)	287, 849
Hsp92I	GRCGYC	1 cut(s)	136
HspAI	GCGC	1 cut(s)	437
Kzo9I	GATC	3 cut(s)	100, 216, 260
LmnI	GCTCC	2 cut(s)	28, 298
Lsp1109I	GCAGC	2 cut(s)	1005, 1023
LweI	GCATC	2 cut(s)	226, 483
MaeI	CTAG	3 cut(s)	264, 422, 872
MaeII	ACGT	2 cut(s)	287, 849
MaeIII	GTNAC	2 cut(s)	576, 867
MalI	GATC	3 cut(s)	102, 218, 262
MboI	GATC	3 cut(s)	100, 216, 260
MboII	GAAGA	1 cut(s)	937
MflI	RGATCY	2 cut(s)	100, 260
MluCI	AATT	6 cut(s)	111, 141, 268, 391, 528, 626
MlyI	GAGTC	4 cut(s)	230, 315, 682, 977
MmeI	TCCRAC	2 cut(s)	238, 270
MnlI	CCTC	6 cut(s)	201, 340, 394, 649, 792, 1051
MroXI	GAANNNNTTC	1 cut(s)	756
MslI	CAYNNNNRTG	1 cut(s)	65
MvnI	CGCG	1 cut(s)	439
MwoI	GCNNNNNNNGC	4 cut(s)	320, 374, 443, 493
NcoI	CCATGG	1 cut(s)	651
NdeII	GATC	3 cut(s)	100, 216, 260
NlaIV	GGNNCC	1 cut(s)	24
NmuCI	GTSAC	2 cut(s)	576, 867
NspI	RCATGY	2 cut(s)	64, 623
NspV	TTCGAA	1 cut(s)	109
PaeI	GCATGC	1 cut(s)	623
PciI	ACATGT	1 cut(s)	60
PdmI	GAANNNNTTC	1 cut(s)	756
PfeI	GAWTC	2 cut(s)	659, 774
PkrI	GCNGC	2 cut(s)	1020, 1038
PleI	GAGTC	4 cut(s)	229, 314, 682, 976
PpsI	GAGTC	4 cut(s)	229, 314, 682, 976
PpuMI	RGGWCCY	2 cut(s)	73, 875
PscI	ACATGT	1 cut(s)	60
PsiI	TTATAA	1 cut(s)	527
Psp5II	RGGWCCY	2 cut(s)	73, 875
PspEI	GGTNACC	1 cut(s)	576
PspN4I	GGNNCC	1 cut(s)	24
PspPI	GGNCC	2 cut(s)	73, 875
PspPPI	RGGWCCY	2 cut(s)	73, 875
PstI	CTGCAG	1 cut(s)	484
PstNI	CAGNNNCTG	1 cut(s)	488
PsuI	RGATCY	2 cut(s)	100, 260
RsaI	GTAC	3 cut(s)	118, 334, 903
RsaNI	GTAC	3 cut(s)	117, 333, 902
RseI	CAYNNNNRTG	1 cut(s)	65
SatI	GCNGC	2 cut(s)	1019, 1037
Sau3AI	GATC	3 cut(s)	100, 216, 260
Sau96I	GGNCC	2 cut(s)	73, 875
ScaI	AGTACT	1 cut(s)	118
SchI	GAGTC	4 cut(s)	230, 315, 682, 977
SfaNI	GCATC	2 cut(s)	226, 483
SfcI	CTRYAG	1 cut(s)	480
SfuI	TTCGAA	1 cut(s)	109
SinI	GGWCC	2 cut(s)	73, 875
SmiMI	CAYNNNNRTG	1 cut(s)	65
SmlI	CTYRAG	1 cut(s)	178
SmoI	CTYRAG	1 cut(s)	178
SphI	GCATGC	1 cut(s)	623
Sse9I	AATT	6 cut(s)	111, 141, 268, 391, 528, 626
SsiI	CCGC	1 cut(s)	439
SspI	AATATT	1 cut(s)	1064
SspMI	CTAG	3 cut(s)	264, 422, 872
StyI	CCWWGG	1 cut(s)	651
TaaI	ACNGT	2 cut(s)	121, 1007
TaiI	ACGT	2 cut(s)	290, 852
TaqI	TCGA	3 cut(s)	109, 219, 604
TasI	AATT	6 cut(s)	111, 141, 268, 391, 528, 626
TatI	WGTACW	2 cut(s)	116, 332
TfiI	GAWTC	2 cut(s)	659, 774
TscAI	CASTG	3 cut(s)	379, 391, 489
TseFI	GTSAC	2 cut(s)	576, 867
TseI	GCWGC	2 cut(s)	1018, 1036
Tsp45I	GTSAC	2 cut(s)	576, 867
TspDTI	ATGAA	1 cut(s)	438
TspGWI	ACGGA	1 cut(s)	55
TspRI	CASTG	3 cut(s)	379, 391, 489
VpaK11BI	GGWCC	2 cut(s)	73, 875
XapI	RAATTY	1 cut(s)	626
XceI	RCATGY	2 cut(s)	64, 623
XcmI	CCANNNNNNNNNTGG	2 cut(s)	33, 991
XmnI	GAANNNNTTC	1 cut(s)	756
XspI	CTAG	3 cut(s)	264, 422, 872
ZrmI	AGTACT	1 cut(s)	118

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.