RchiOBHm_Chr1g0358601
BZIP Family

Common plant regulatory factor

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
Physical Location & Seq
Forward (+)
50718435 .. 50728254
9820 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ58372

Sequence Viewer

Length: 1284 bp
ATGGGTAACAATGATGAAGTGAAATCTGTGAAGACTGAAAAATCATCTCCACCTCTGACTGCGGATCCCAAAAACCATACCAATCAGACGAATATTCATGTTTATCCTGATTGGGCAGCCATGCAGGCATATTATGGTCCCAGACTTCCTATGCCCCCATATTACAACGCACCAGCTGCTTCTGGCCATGCTCCCCATCCATATATGTGGGGCCCACCACAGACTATGATGTCACCCTATGGGGCACCTTATGCAGCAATATACTCTCATGGAAGTGTCTATGCACATCCAGCAGTTCCTCTTAGTTCAAATGGTCAAGGGGTTCCACTATCACCTGCTGCTGCAAATCCTTCAAGTATGGAAACACCTACAAAGTCATCTGGTAATAATGATCGAGGGTTAGTGAAAAAGCCAAAAGGATTTGATGCACTTGAAATGTCAATAGGCAATGGTAATGCTGAGAATGCTGAAGGTGGAGCTGATCAGTCTCTCTCCAAGAGTTCCGCAACTGAAGGTTCTAGTAGTGATGGGAATACTTCTGGGGCAAATCAAACCAGAAGAAAAAGAACTCGTGAGGGAACACCCACCACTGTTGAGGCAATAGCTGGAGATCAGAAACCGGAAATGCAGGCCAGTCTGGCTTCTGCAAAGGATGTAAACCCGGCTTCTTATAAGGCATTGGGTACAACTATTGCTACTGTTGGTGTCCCAGGAAAATTGGTCAGACCAGCAGTTTCTCCTGGCGTGACCAATGTGTTGGAGCTCAAGAATTCATCCAACTTGAACTTGACTAGCGCTACTAGTGTTGAACAACCCAGTGCAGTTTTGCCTCCAGAGACCTGGTTACAGAATGAAAGGGAGCTCAAACGGGAGAGGAGGAAACAATCTAATCGGGAATCTGCTAGAAGATCCAGGTTGAGGAAGCAGGCTGAGACTGATGAACTTGCACGAAAAGTAGAGGCCTTAAATGCTGATAATGTGTCTCTTAAGTCTGAAATAAATCGATTGACAGAAAGTTCTGATAGACTGAGGGTTGAAAATGCTTCACTAATGGAGAAACTGAAAAAAGCACGAGTAGGACGGATGGAAGAGATTATCATGAAAATTGATGATAACAGGGTCGAAGCTATTAGTACAGAAAACCTGCTGTCAAGAGTCAATAACTCCGGTGCATTAGCTAGAGATGTTGAGGAAGAGGGTAGCATGTATGAGAAAAACGCTGGGGCGAAGCTGCATCAGCTCCTTGATGCGAGTCCAAGGACCGATGCCATTGTTGCTAGCTAG

Protein Analysis

427

Amino Acids

45.91

Weight (kDa)

8.75

Isoelectric Point (pI)

44.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MFMR PF07777 1 - 100 1.2e-32 G-box binding protein MFMR
MFMR_assoc PF16596 131 - 245 5.1e-13 Disordered region downstream of MFMR
bZIP_1 PF00170 285 - 347 2.3e-18 bZIP transcription factor
bZIP_2 PF07716 287 - 337 2.9e-07 Basic region leucine zipper
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 672
AarI CACCTGC 1 cut(s) 343
AasI GACNNNNNNGTC 1 cut(s) 229
Acc36I ACCTGC 2 cut(s) 343, 1152
AccB1I GGYRCC 1 cut(s) 244
AciI CCGC 2 cut(s) 62, 504
AclWI GGATC 3 cut(s) 59, 72, 903
AcoI YGGCCR 1 cut(s) 184
AcsI RAATTY 1 cut(s) 769
AcuI CTGAAG 2 cut(s) 489, 531
AfaI GTAC 2 cut(s) 685, 1135
AfeI AGCGCT 1 cut(s) 796
AfiI CCNNNNNNNGG 1 cut(s) 918
AflII CTTAAG 1 cut(s) 986
AgsI TTSAA 6 cut(s) 309, 354, 434, 784, 809, 1037
AhlI ACTAGT 1 cut(s) 800
AjnI CCWGG 4 cut(s) 709, 739, 839, 911
Alw21I GWGCWC 2 cut(s) 765, 864
Alw26I GTCTC 4 cut(s) 492, 830, 926, 987
AlwI GGATC 3 cut(s) 59, 72, 903
Aor51HI AGCGCT 1 cut(s) 796
AoxI GGCC 4 cut(s) 184, 211, 630, 960
ApaI GGGCCC 1 cut(s) 215
ApeKI GCWGC 6 cut(s) 116, 176, 254, 338, 341, 1231
ApoI RAATTY 1 cut(s) 769
AspLEI GCGC 1 cut(s) 797
AspS9I GGNCC 4 cut(s) 137, 211, 212, 1260
AsuC2I CCSGG 1 cut(s) 662
AsuHPI GGTGA 2 cut(s) 225, 324
AsuNHI GCTAGC 1 cut(s) 1277
AvaII GGWCC 2 cut(s) 137, 1260
BaeGI GKGCMC 2 cut(s) 215, 247
BalI TGGCCA 1 cut(s) 186
BamHI GGATCC 1 cut(s) 64
BanI GGYRCC 1 cut(s) 244
BanII GRGCYC 3 cut(s) 215, 765, 864
BauI CACGAG 2 cut(s) 570, 1071
BbsI GAAGAC 1 cut(s) 38
Bbv12I GWGCWC 2 cut(s) 765, 864
BbvI GCAGC 6 cut(s) 128, 163, 266, 325, 328, 1218
BccI CCATC 3 cut(s) 204, 521, 1078
BciT130I CCWGG 4 cut(s) 711, 741, 841, 913
BclI TGATCA 1 cut(s) 481
BcnI CCSGG 1 cut(s) 662
BcoDI GTCTC 4 cut(s) 492, 830, 926, 987
BcuI ACTAGT 1 cut(s) 800
BfaI CTAG 7 cut(s) 519, 792, 801, 903, 1179, 1278, 1282
BfoI RGCGCY 1 cut(s) 798
BfrI CTTAAG 1 cut(s) 986
BfuAI ACCTGC 2 cut(s) 343, 1152
BglI GCCNNNNNGGC 2 cut(s) 125, 638
BisI GCNGC 6 cut(s) 117, 177, 255, 339, 342, 1232
BlsI GCNGC 6 cut(s) 118, 178, 256, 340, 343, 1233
Bme1390I CCNGG 5 cut(s) 662, 711, 741, 841, 913
Bme18I GGWCC 2 cut(s) 137, 1260
BmgT120I GGNCC 4 cut(s) 137, 211, 212, 1260
BmiI GGNNCC 6 cut(s) 66, 139, 212, 213, 246, 324
BmrFI CCNGG 5 cut(s) 662, 711, 741, 841, 913
BmrI ACTGGG 1 cut(s) 810
BmsI GCATC 4 cut(s) 415, 1237, 1243, 1255
BmtI GCTAGC 1 cut(s) 1281
BmuI ACTGGG 1 cut(s) 810
BpiI GAAGAC 1 cut(s) 38
BpmI CTGGAG 2 cut(s) 627, 816
BpuEI CTTGAG 1 cut(s) 749
BpuMI CCSGG 1 cut(s) 662
Bsa29I ATCGAT 1 cut(s) 1003
BsaI GGTCTC 1 cut(s) 830
BsaJI CCNNGG 2 cut(s) 709, 1256
BsaWI WCCGGW 2 cut(s) 619, 1166
Bsc4I CCNNNNNNNGG 1 cut(s) 918
Bse1I ACTGG 2 cut(s) 633, 816
Bse3DI GCAATG 1 cut(s) 454
BseBI CCWGG 4 cut(s) 711, 741, 841, 913
BseCI ATCGAT 1 cut(s) 1003
BseDI CCNNGG 2 cut(s) 709, 1256
BseGI GGATG 5 cut(s) 196, 286, 658, 773, 1089
BseLI CCNNNNNNNGG 1 cut(s) 918
BseMI GCAATG 1 cut(s) 454
BseMII CTCAG 3 cut(s) 450, 921, 1019
BseNI ACTGG 2 cut(s) 633, 816
BseRI GAGGAG 1 cut(s) 889
BseSI GKGCMC 2 cut(s) 215, 247
BseXI GCAGC 6 cut(s) 128, 163, 266, 325, 328, 1218
BseYI CCCAGC 1 cut(s) 1220
BsgI GTGCAG 1 cut(s) 840
BshFI GGCC 4 cut(s) 186, 213, 632, 962
BshNI GGYRCC 1 cut(s) 244
BshVI ATCGAT 1 cut(s) 1003
BsiHKAI GWGCWC 2 cut(s) 765, 864
BsiSI CCGG 3 cut(s) 620, 662, 1167
BslFI GGGAC 2 cut(s) 123, 692
BslI CCNNNNNNNGG 1 cut(s) 918
BsmAI GTCTC 4 cut(s) 492, 830, 926, 987
BsmFI GGGAC 2 cut(s) 123, 692
BsmI GAATGC 1 cut(s) 469
BsnI GGCC 4 cut(s) 186, 213, 632, 962
Bso31I GGTCTC 1 cut(s) 830
Bsp120I GGGCCC 1 cut(s) 211
Bsp1286I GDGCHC 4 cut(s) 215, 247, 765, 864
Bsp143I GATC 5 cut(s) 64, 391, 481, 610, 908
BspACI CCGC 2 cut(s) 62, 504
BspANI GGCC 4 cut(s) 186, 213, 632, 962
BspCNI CTCAG 3 cut(s) 451, 922, 1020
BspDI ATCGAT 1 cut(s) 1003
BspHI TCATGA 1 cut(s) 1098
BspLI GGNNCC 6 cut(s) 66, 139, 212, 213, 246, 324
BspMI ACCTGC 2 cut(s) 343, 1152
BspOI GCTAGC 1 cut(s) 1281
BspPI GGATC 3 cut(s) 59, 72, 903
BspT107I GGYRCC 1 cut(s) 244
BspTI CTTAAG 1 cut(s) 986
BspTNI GGTCTC 1 cut(s) 830
BsrDI GCAATG 1 cut(s) 454
BsrI ACTGG 2 cut(s) 633, 816
BssECI CCNNGG 2 cut(s) 709, 1256
BssMI GATC 5 cut(s) 64, 391, 481, 610, 908
BssSI CACGAG 2 cut(s) 570, 1071
BssT1I CCWWGG 1 cut(s) 1256
Bst2BI CACGAG 2 cut(s) 570, 1071
Bst2UI CCWGG 4 cut(s) 711, 741, 841, 913
Bst4CI ACNGT 2 cut(s) 592, 700
Bst6I CTCTTC 2 cut(s) 1083, 1188
BstAFI CTTAAG 1 cut(s) 986
BstAPI GCANNNNNTGC 2 cut(s) 176, 251
BstC8I GCNNGC 4 cut(s) 126, 630, 927, 1279
BstDEI CTNAG 4 cut(s) 302, 459, 930, 1028
BstF5I GGATG 5 cut(s) 196, 286, 658, 773, 1089
BstH2I RGCGCY 1 cut(s) 798
BstHHI GCGC 1 cut(s) 797
BstKTI GATC 5 cut(s) 67, 394, 484, 613, 911
BstMAI GTCTC 4 cut(s) 492, 830, 926, 987
BstMBI GATC 5 cut(s) 64, 391, 481, 610, 908
BstMWI GCNNNNNNNGC 9 cut(s) 125, 176, 251, 290, 464, 638, 968, 1237, 1274
BstNI CCWGG 4 cut(s) 711, 741, 841, 913
BstNSI RCATGY 1 cut(s) 1207
BstSCI CCNGG 5 cut(s) 660, 709, 739, 839, 911
BstSLI GKGCMC 2 cut(s) 215, 247
BstV1I GCAGC 6 cut(s) 128, 163, 266, 325, 328, 1218
BstV2I GAAGAC 1 cut(s) 38
BstX2I RGATCY 2 cut(s) 64, 908
BstXI CCANNNNNNTGG 3 cut(s) 207, 757, 840
BstYI RGATCY 2 cut(s) 64, 908
Bsu15I ATCGAT 1 cut(s) 1003
BsuRI GGCC 4 cut(s) 186, 213, 632, 962
BsuTUI ATCGAT 1 cut(s) 1003
BtsCI GGATG 5 cut(s) 196, 286, 658, 773, 1089
BtsIMutI CAGTG 2 cut(s) 588, 823
BveI ACCTGC 2 cut(s) 343, 1152
Cac8I GCNNGC 4 cut(s) 126, 630, 927, 1279
CciI TCATGA 1 cut(s) 1098
CfoI GCGC 1 cut(s) 797
Cfr13I GGNCC 4 cut(s) 137, 211, 212, 1260
ClaI ATCGAT 1 cut(s) 1003
CsiI ACCWGGT 1 cut(s) 839
Csp6I GTAC 2 cut(s) 684, 1134
CspCI CAANNNNNGTGG 2 cut(s) 574, 609
CviAII CATG 6 cut(s) 98, 121, 188, 269, 1099, 1204
CviQI GTAC 2 cut(s) 684, 1134
DdeI CTNAG 4 cut(s) 302, 459, 930, 1028
DpnI GATC 5 cut(s) 66, 393, 483, 612, 910
DpnII GATC 5 cut(s) 64, 391, 481, 610, 908
DrdI GACNNNNNNGTC 1 cut(s) 229
DseDI GACNNNNNNGTC 1 cut(s) 229
EaeI YGGCCR 1 cut(s) 184
Eam1104I CTCTTC 2 cut(s) 1083, 1188
EarI CTCTTC 2 cut(s) 1083, 1188
Ecl136II GAGCTC 2 cut(s) 763, 862
Eco130I CCWWGG 1 cut(s) 1256
Eco147I AGGCCT 1 cut(s) 962
Eco24I GRGCYC 3 cut(s) 215, 765, 864
Eco31I GGTCTC 1 cut(s) 830
Eco47I GGWCC 2 cut(s) 137, 1260
Eco47III AGCGCT 1 cut(s) 796
Eco53kI GAGCTC 2 cut(s) 763, 862
Eco57I CTGAAG 2 cut(s) 489, 531
EcoICRI GAGCTC 2 cut(s) 763, 862
EcoO109I RGGNCCY 1 cut(s) 211
EcoRI GAATTC 1 cut(s) 769
EcoRII CCWGG 4 cut(s) 709, 739, 839, 911
EcoT14I CCWWGG 1 cut(s) 1256
EcoT38I GRGCYC 3 cut(s) 215, 765, 864
ErhI CCWWGG 1 cut(s) 1256
FaeI CATG 6 cut(s) 101, 124, 191, 272, 1102, 1207
FaqI GGGAC 2 cut(s) 123, 692
FatI CATG 6 cut(s) 97, 120, 187, 268, 1098, 1203
FbaI TGATCA 1 cut(s) 481
Fnu4HI GCNGC 6 cut(s) 117, 177, 255, 339, 342, 1232
FokI GGATG 5 cut(s) 183, 273, 665, 760, 1096
FriOI GRGCYC 3 cut(s) 215, 765, 864
Fsp4HI GCNGC 6 cut(s) 117, 177, 255, 339, 342, 1232
FspBI CTAG 7 cut(s) 519, 792, 801, 903, 1179, 1278, 1282
GlaI GCGC 1 cut(s) 796
GluI GCNGC 6 cut(s) 117, 177, 255, 339, 342, 1232
GsaI CCCAGC 1 cut(s) 1224
GsuI CTGGAG 2 cut(s) 627, 816
HaeII RGCGCY 1 cut(s) 798
HaeIII GGCC 4 cut(s) 186, 213, 632, 962
HapII CCGG 3 cut(s) 620, 662, 1167
HhaI GCGC 1 cut(s) 797
Hin1II CATG 6 cut(s) 101, 124, 191, 272, 1102, 1207
Hin6I GCGC 1 cut(s) 795
HinP1I GCGC 1 cut(s) 795
HinfI GANTC 3 cut(s) 896, 1155, 1252
HpaII CCGG 3 cut(s) 620, 662, 1167
HphI GGTGA 2 cut(s) 225, 324
Hpy166II GTNNAC 1 cut(s) 658
Hpy188I TCNGA 6 cut(s) 57, 87, 615, 725, 994, 1021
Hpy188III TCNNGA 7 cut(s) 107, 572, 766, 833, 893, 1099, 1152
Hpy8I GTNNAC 1 cut(s) 658
HpyAV CCTTC 3 cut(s) 360, 464, 506
HpyCH4III ACNGT 2 cut(s) 592, 700
HpyF10VI GCNNNNNNNGC 9 cut(s) 125, 176, 251, 290, 464, 638, 968, 1237, 1274
HpyF3I CTNAG 4 cut(s) 302, 459, 930, 1028
Hsp92II CATG 6 cut(s) 101, 124, 191, 272, 1102, 1207
HspAI GCGC 1 cut(s) 795
Ksp22I TGATCA 1 cut(s) 481
Kzo9I GATC 5 cut(s) 64, 391, 481, 610, 908
LmnI GCTCC 5 cut(s) 196, 476, 760, 859, 1245
Lsp1109I GCAGC 6 cut(s) 128, 163, 266, 325, 328, 1218
LweI GCATC 4 cut(s) 415, 1237, 1243, 1255
MabI ACCWGGT 1 cut(s) 839
MaeI CTAG 7 cut(s) 519, 792, 801, 903, 1179, 1278, 1282
MaeIII GTNAC 4 cut(s) 5, 231, 745, 843
MalI GATC 5 cut(s) 66, 393, 483, 612, 910
MboI GATC 5 cut(s) 64, 391, 481, 610, 908
MboII GAAGA 5 cut(s) 43, 570, 918, 1100, 1205
MflI RGATCY 2 cut(s) 64, 908
MhlI GDGCHC 4 cut(s) 215, 247, 765, 864
MlsI TGGCCA 1 cut(s) 186
MluCI AATT 3 cut(s) 716, 769, 1104
MluNI TGGCCA 1 cut(s) 186
MlyI GAGTC 2 cut(s) 1164, 1261
MmeI TCCRAC 2 cut(s) 738, 801
Mox20I TGGCCA 1 cut(s) 186
MscI TGGCCA 1 cut(s) 186
MseI TTAA 2 cut(s) 965, 987
MslI CAYNNNNRTG 2 cut(s) 205, 273
Msp20I TGGCCA 1 cut(s) 186
MspA1I CMGCKG 1 cut(s) 176
MspCI CTTAAG 1 cut(s) 986
MspI CCGG 3 cut(s) 620, 662, 1167
MspR9I CCNGG 5 cut(s) 662, 711, 741, 841, 913
Mva1269I GAATGC 1 cut(s) 469
MvaI CCWGG 4 cut(s) 711, 741, 841, 913
MwoI GCNNNNNNNGC 9 cut(s) 125, 176, 251, 290, 464, 638, 968, 1237, 1274
NciI CCSGG 1 cut(s) 662
NdeII GATC 5 cut(s) 64, 391, 481, 610, 908
NheI GCTAGC 1 cut(s) 1277
NlaIII CATG 6 cut(s) 101, 124, 191, 272, 1102, 1207
NlaIV GGNNCC 6 cut(s) 66, 139, 212, 213, 246, 324
NmuCI GTSAC 2 cut(s) 231, 745
NspI RCATGY 1 cut(s) 1207
PagI TCATGA 1 cut(s) 1098
PaqCI CACCTGC 1 cut(s) 343
PceI AGGCCT 1 cut(s) 962
PctI GAATGC 1 cut(s) 469
PfeI GAWTC 1 cut(s) 896
PkrI GCNGC 6 cut(s) 118, 178, 256, 340, 343, 1233
PleI GAGTC 2 cut(s) 1163, 1260
PpsI GAGTC 2 cut(s) 1163, 1260
PsiI TTATAA 1 cut(s) 672
Psp124BI GAGCTC 2 cut(s) 765, 864
Psp6I CCWGG 4 cut(s) 709, 739, 839, 911
PspFI CCCAGC 1 cut(s) 1220
PspGI CCWGG 4 cut(s) 709, 739, 839, 911
PspN4I GGNNCC 6 cut(s) 66, 139, 212, 213, 246, 324
PspOMI GGGCCC 1 cut(s) 211
PspPI GGNCC 4 cut(s) 137, 211, 212, 1260
PsuI RGATCY 2 cut(s) 64, 908
PvuII CAGCTG 1 cut(s) 176
RsaI GTAC 2 cut(s) 685, 1135
RsaNI GTAC 2 cut(s) 684, 1134
RseI CAYNNNNRTG 2 cut(s) 205, 273
SacI GAGCTC 2 cut(s) 765, 864
SaqAI TTAA 2 cut(s) 965, 987
SatI GCNGC 6 cut(s) 117, 177, 255, 339, 342, 1232
Sau3AI GATC 5 cut(s) 64, 391, 481, 610, 908
Sau96I GGNCC 4 cut(s) 137, 211, 212, 1260
SchI GAGTC 2 cut(s) 1164, 1261
ScrFI CCNGG 5 cut(s) 662, 711, 741, 841, 913
SduI GDGCHC 4 cut(s) 215, 247, 765, 864
SexAI ACCWGGT 1 cut(s) 839
SfaNI GCATC 4 cut(s) 415, 1237, 1243, 1255
SinI GGWCC 2 cut(s) 137, 1260
SmiMI CAYNNNNRTG 2 cut(s) 205, 273
SmlI CTYRAG 2 cut(s) 764, 986
SmoI CTYRAG 2 cut(s) 764, 986
SpeI ACTAGT 1 cut(s) 800
Sse9I AATT 3 cut(s) 716, 769, 1104
SseBI AGGCCT 1 cut(s) 962
SsiI CCGC 2 cut(s) 62, 504
SspI AATATT 1 cut(s) 94
SspMI CTAG 7 cut(s) 519, 792, 801, 903, 1179, 1278, 1282
SstI GAGCTC 2 cut(s) 765, 864
StuI AGGCCT 1 cut(s) 962
StyD4I CCNGG 5 cut(s) 660, 709, 739, 839, 911
StyI CCWWGG 1 cut(s) 1256
TaaI ACNGT 2 cut(s) 592, 700
TaqI TCGA 3 cut(s) 394, 1003, 1122
TaqII GACCGA 1 cut(s) 1277
TasI AATT 3 cut(s) 716, 769, 1104
TatI WGTACW 1 cut(s) 1133
TfiI GAWTC 1 cut(s) 896
Tru1I TTAA 2 cut(s) 965, 987
Tru9I TTAA 2 cut(s) 965, 987
TscAI CASTG 2 cut(s) 595, 823
TseFI GTSAC 2 cut(s) 231, 745
TseI GCWGC 6 cut(s) 116, 176, 254, 338, 341, 1231
Tsp45I GTSAC 2 cut(s) 231, 745
TspDTI ATGAA 6 cut(s) 30, 86, 762, 867, 954, 1115
TspGWI ACGGA 1 cut(s) 1096
TspRI CASTG 2 cut(s) 595, 823
Vha464I CTTAAG 1 cut(s) 986
VpaK11BI GGWCC 2 cut(s) 137, 1260
XapI RAATTY 1 cut(s) 769
XceI RCATGY 1 cut(s) 1207
XspI CTAG 7 cut(s) 519, 792, 801, 903, 1179, 1278, 1282
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.