Rorug01G0262900
BZIP Family

Belongs to the multi antimicrobial extrusion (MATE) (TC 2.A.66.1) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0004117
Physical Location & Seq
Reverse (-)
37273988 .. 37275927
1940 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0262900.1

Sequence Viewer

Length: 912 bp
ATGGGTGCTAATTTATCGGGGGGTGTTTCGGACACGGAGGGTTATGCGCAGCCGAGGCTTGGGGATATACCAGAGAGCTGTGTGGCATTGGTTTTGATGTACATGGACCCTCCTGAGATTTGCAAATTGGCCCGGTTGAACCGGGCTTTTCGCGGTGCTTCGTGGGCCGATTTCATCTGGCAATCGAAGTTGCCCACGAATTACCGGTTTATTGTGGACAAGGTGTTCGATGAAAAGTCTATGGTGAAGAATTCAGGGATGAGGGATATTTATACCACGCTTTGCAAGTCTATTTCGTTTGATGATGGAACAAAGCAAATTTGGCTAGATAAGACCAAGGGTGGTATTCATCTGTCGATTTCTTCAAAGGCGTTATCGATTACAGGGATAGATGATCGAAGATATTGGAATTTCATAGCGATTGATGAATCAAGGAAACCAGCAAGAGCTGCAATTGTGTATCTTTGTCCCAGTTTGCGAGCCTTGCCCCTTTTTGATATGTTTCAGACAGTGGCTTATCTCCAACAAACCTGGTGGTTTGAAGTTAATGGAGAGTTTGACTTTCAATTTCCATTAGGCAAATATAGCCTCTTCTTTAGGCTCCACCTTGGCAGATCCTCCAAGAGACTTGGTCGCCGAGTATGCAATTCGGAGCATGTTCATGGCTGGAACATAAAACCAGTGAAGTTTGAGCTTACAACTTCTAATGGTCACCAGGCTGTATCAGAATATTACTTGGACAACCCTGGAAACTGGGTCAATTACCATGTGGGAGACTTTATTGTTGACGATCCTCATGCTTTGATCAAGGTCAAATATTCGATGACCCAGATCGATTGTACTCACACCAAAGGCGGTGTCTGTGTAGACTCTGTGTTGATACGCCCTAGTAGTGTAGGGAAAGAGCATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005215 GO:0006810 GO:0006855 GO:0008150 GO:0015238 GO:0015893 GO:0022857 GO:0042221 GO:0042493 GO:0050896 GO:0051179 GO:0051234 GO:0055085
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MatE

Protein Analysis

303

Amino Acids

34.45

Weight (kDa)

8.58

Isoelectric Point (pI)

28.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PP2 PF14299 167 - 296 6.7e-26 Phloem protein 2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 48
AccI GTMKAC 1 cut(s) 867
AccII CGCG 1 cut(s) 153
AciI CCGC 2 cut(s) 153, 855
AclWI GGATC 2 cut(s) 609, 785
AcsI RAATTY 3 cut(s) 250, 318, 409
AfaI GTAC 2 cut(s) 101, 841
AfiI CCNNNNNNNGG 1 cut(s) 59
AgeI ACCGGT 1 cut(s) 204
AgsI TTSAA 4 cut(s) 139, 366, 542, 566
AjnI CCWGG 3 cut(s) 530, 714, 745
AloI GAACNNNNNNTCC 2 cut(s) 209, 241
AluBI AGCT 3 cut(s) 78, 449, 694
AluI AGCT 3 cut(s) 78, 449, 694
Alw26I GTCTC 2 cut(s) 619, 768
AlwI GGATC 2 cut(s) 609, 785
AoxI GGCC 2 cut(s) 129, 165
ApeKI GCWGC 2 cut(s) 49, 449
ApoI RAATTY 3 cut(s) 250, 318, 409
ArsI GACNNNNNNTTYG 4 cut(s) 209, 241, 843, 875
AsiGI ACCGGT 1 cut(s) 204
AspLEI GCGC 1 cut(s) 49
AspS9I GGNCC 3 cut(s) 106, 130, 165
AsuC2I CCSGG 2 cut(s) 133, 143
AsuHPI GGTGA 2 cut(s) 256, 704
AvaII GGWCC 1 cut(s) 106
BbvI GCAGC 2 cut(s) 61, 436
BccI CCATC 1 cut(s) 299
BcgI CGANNNNNNTGC 2 cut(s) 779, 813
BciT130I CCWGG 3 cut(s) 532, 716, 747
BclI TGATCA 1 cut(s) 804
BcnI CCSGG 2 cut(s) 133, 143
BcoDI GTCTC 2 cut(s) 619, 768
BfaI CTAG 2 cut(s) 326, 888
BisI GCNGC 2 cut(s) 50, 450
BlsI GCNGC 2 cut(s) 51, 451
Bme1390I CCNGG 5 cut(s) 133, 143, 532, 716, 747
Bme18I GGWCC 1 cut(s) 106
BmgT120I GGNCC 3 cut(s) 106, 130, 165
BmiI GGNNCC 2 cut(s) 108, 602
BmrFI CCNGG 5 cut(s) 133, 143, 532, 716, 747
BmrI ACTGGG 2 cut(s) 465, 763
BmuI ACTGGG 2 cut(s) 465, 763
BpuMI CCSGG 2 cut(s) 133, 143
Bsa29I ATCGAT 2 cut(s) 377, 834
BsaJI CCNNGG 4 cut(s) 53, 336, 607, 745
BsaWI WCCGGW 1 cut(s) 204
Bsc4I CCNNNNNNNGG 1 cut(s) 59
Bse118I RCCGGY 1 cut(s) 204
Bse1I ACTGG 3 cut(s) 471, 680, 758
BseBI CCWGG 3 cut(s) 532, 716, 747
BseCI ATCGAT 2 cut(s) 377, 834
BseDI CCNNGG 4 cut(s) 53, 336, 607, 745
BseGI GGATG 1 cut(s) 264
BseLI CCNNNNNNNGG 1 cut(s) 59
BseMII CTCAG 1 cut(s) 105
BseNI ACTGG 3 cut(s) 471, 680, 758
BseXI GCAGC 2 cut(s) 61, 436
Bsh1236I CGCG 1 cut(s) 153
BshFI GGCC 2 cut(s) 131, 167
BshTI ACCGGT 1 cut(s) 204
BshVI ATCGAT 2 cut(s) 377, 834
BsiSI CCGG 3 cut(s) 133, 142, 205
BslFI GGGAC 1 cut(s) 453
BslI CCNNNNNNNGG 1 cut(s) 59
BsmAI GTCTC 2 cut(s) 619, 768
BsmFI GGGAC 1 cut(s) 453
BsnI GGCC 2 cut(s) 131, 167
Bsp1407I TGTACA 1 cut(s) 99
Bsp143I GATC 5 cut(s) 394, 614, 790, 804, 831
BspACI CCGC 2 cut(s) 153, 855
BspANI GGCC 2 cut(s) 131, 167
BspCNI CTCAG 1 cut(s) 106
BspDI ATCGAT 2 cut(s) 377, 834
BspFNI CGCG 1 cut(s) 153
BspLI GGNNCC 2 cut(s) 108, 602
BspPI GGATC 2 cut(s) 609, 785
BsrFI RCCGGY 1 cut(s) 204
BsrGI TGTACA 1 cut(s) 99
BsrI ACTGG 3 cut(s) 471, 680, 758
BssAI RCCGGY 1 cut(s) 204
BssECI CCNNGG 4 cut(s) 53, 336, 607, 745
BssMI GATC 5 cut(s) 394, 614, 790, 804, 831
BssT1I CCWWGG 2 cut(s) 336, 607
Bst2UI CCWGG 3 cut(s) 532, 716, 747
Bst4CI ACNGT 1 cut(s) 511
Bst6I CTCTTC 1 cut(s) 596
BstAPI GCANNNNNTGC 1 cut(s) 449
BstAUI TGTACA 1 cut(s) 99
BstC8I GCNNGC 1 cut(s) 480
BstDEI CTNAG 1 cut(s) 114
BstEII GGTNACC 1 cut(s) 710
BstF5I GGATG 1 cut(s) 264
BstFNI CGCG 1 cut(s) 153
BstHHI GCGC 1 cut(s) 49
BstKTI GATC 5 cut(s) 397, 617, 793, 807, 834
BstMAI GTCTC 2 cut(s) 619, 768
BstMBI GATC 5 cut(s) 394, 614, 790, 804, 831
BstMWI GCNNNNNNNGC 7 cut(s) 55, 164, 322, 449, 484, 585, 642
BstNI CCWGG 3 cut(s) 532, 716, 747
BstNSI RCATGY 1 cut(s) 659
BstPI GGTNACC 1 cut(s) 710
BstSCI CCNGG 5 cut(s) 131, 141, 530, 714, 745
BstUI CGCG 1 cut(s) 153
BstV1I GCAGC 2 cut(s) 61, 436
BstX2I RGATCY 1 cut(s) 614
BstYI RGATCY 1 cut(s) 614
Bsu15I ATCGAT 2 cut(s) 377, 834
BsuRI GGCC 2 cut(s) 131, 167
BsuTUI ATCGAT 2 cut(s) 377, 834
BtsCI GGATG 1 cut(s) 264
BtsIMutI CAGTG 2 cut(s) 516, 687
Cac8I GCNNGC 1 cut(s) 480
CfoI GCGC 1 cut(s) 49
Cfr10I RCCGGY 1 cut(s) 204
Cfr13I GGNCC 3 cut(s) 106, 130, 165
ClaI ATCGAT 2 cut(s) 377, 834
CsiI ACCWGGT 1 cut(s) 530
Csp6I GTAC 2 cut(s) 100, 840
CspAI ACCGGT 1 cut(s) 204
CspCI CAANNNNNGTGG 2 cut(s) 515, 550
CviAII CATG 5 cut(s) 103, 656, 662, 767, 797
CviQI GTAC 2 cut(s) 100, 840
DdeI CTNAG 1 cut(s) 114
DpnI GATC 5 cut(s) 396, 616, 792, 806, 833
DpnII GATC 5 cut(s) 394, 614, 790, 804, 831
Eam1104I CTCTTC 1 cut(s) 596
EarI CTCTTC 1 cut(s) 596
Eco130I CCWWGG 2 cut(s) 336, 607
Eco47I GGWCC 1 cut(s) 106
Eco91I GGTNACC 1 cut(s) 710
EcoO65I GGTNACC 1 cut(s) 710
EcoRI GAATTC 1 cut(s) 250
EcoRII CCWGG 3 cut(s) 530, 714, 745
EcoT14I CCWWGG 2 cut(s) 336, 607
ErhI CCWWGG 2 cut(s) 336, 607
FaeI CATG 5 cut(s) 106, 659, 665, 770, 800
FaqI GGGAC 1 cut(s) 453
FatI CATG 5 cut(s) 102, 655, 661, 766, 796
FbaI TGATCA 1 cut(s) 804
FblI GTMKAC 1 cut(s) 867
Fnu4HI GCNGC 2 cut(s) 50, 450
FokI GGATG 1 cut(s) 271
Fsp4HI GCNGC 2 cut(s) 50, 450
FspBI CTAG 2 cut(s) 326, 888
FspI TGCGCA 1 cut(s) 48
GlaI GCGC 1 cut(s) 48
GluI GCNGC 2 cut(s) 50, 450
HaeIII GGCC 2 cut(s) 131, 167
HapII CCGG 3 cut(s) 133, 142, 205
HhaI GCGC 1 cut(s) 49
Hin1II CATG 5 cut(s) 106, 659, 665, 770, 800
Hin6I GCGC 1 cut(s) 47
HinP1I GCGC 1 cut(s) 47
HincII GTYRAC 1 cut(s) 787
HindII GTYRAC 1 cut(s) 787
HinfI GANTC 2 cut(s) 428, 869
HpaII CCGG 3 cut(s) 133, 142, 205
HphI GGTGA 2 cut(s) 256, 704
Hpy166II GTNNAC 3 cut(s) 217, 787, 868
Hpy188I TCNGA 4 cut(s) 31, 507, 652, 727
Hpy188III TCNNGA 1 cut(s) 113
Hpy8I GTNNAC 3 cut(s) 217, 787, 868
HpyCH4III ACNGT 1 cut(s) 511
HpyCH4V TGCA 4 cut(s) 123, 285, 452, 645
HpyF10VI GCNNNNNNNGC 7 cut(s) 55, 164, 322, 449, 484, 585, 642
HpyF3I CTNAG 1 cut(s) 114
Hsp92II CATG 5 cut(s) 106, 659, 665, 770, 800
HspAI GCGC 1 cut(s) 47
Ksp22I TGATCA 1 cut(s) 804
Kzo9I GATC 5 cut(s) 394, 614, 790, 804, 831
LmnI GCTCC 2 cut(s) 606, 652
Lsp1109I GCAGC 2 cut(s) 61, 436
MabI ACCWGGT 1 cut(s) 530
MaeI CTAG 2 cut(s) 326, 888
MaeIII GTNAC 1 cut(s) 710
MalI GATC 5 cut(s) 396, 616, 792, 806, 833
MboI GATC 5 cut(s) 394, 614, 790, 804, 831
MboII GAAGA 4 cut(s) 259, 354, 411, 583
MfeI CAATTG 1 cut(s) 453
MflI RGATCY 1 cut(s) 614
MlyI GAGTC 1 cut(s) 863
MmeI TCCRAC 1 cut(s) 547
MnlI CCTC 7 cut(s) 31, 48, 120, 255, 599, 628, 804
MseI TTAA 1 cut(s) 546
MslI CAYNNNNRTG 1 cut(s) 660
MspI CCGG 3 cut(s) 133, 142, 205
MspR9I CCNGG 5 cut(s) 133, 143, 532, 716, 747
MunI CAATTG 1 cut(s) 453
MvaI CCWGG 3 cut(s) 532, 716, 747
MvnI CGCG 1 cut(s) 153
MwoI GCNNNNNNNGC 7 cut(s) 55, 164, 322, 449, 484, 585, 642
NciI CCSGG 2 cut(s) 133, 143
NdeII GATC 5 cut(s) 394, 614, 790, 804, 831
NlaIII CATG 5 cut(s) 106, 659, 665, 770, 800
NlaIV GGNNCC 2 cut(s) 108, 602
NmeAIII GCCGAG 2 cut(s) 78, 662
NmuCI GTSAC 1 cut(s) 710
NsbI TGCGCA 1 cut(s) 48
NspI RCATGY 1 cut(s) 659
PfeI GAWTC 1 cut(s) 428
PflFI GACNNNGTC 1 cut(s) 630
PinAI ACCGGT 1 cut(s) 204
PkrI GCNGC 2 cut(s) 51, 451
PleI GAGTC 1 cut(s) 863
PpsI GAGTC 1 cut(s) 863
Psp6I CCWGG 3 cut(s) 530, 714, 745
PspEI GGTNACC 1 cut(s) 710
PspGI CCWGG 3 cut(s) 530, 714, 745
PspN4I GGNNCC 2 cut(s) 108, 602
PspPI GGNCC 3 cut(s) 106, 130, 165
PsuI RGATCY 1 cut(s) 614
PsyI GACNNNGTC 1 cut(s) 630
RsaI GTAC 2 cut(s) 101, 841
RsaNI GTAC 2 cut(s) 100, 840
RseI CAYNNNNRTG 1 cut(s) 660
SaqAI TTAA 1 cut(s) 546
SatI GCNGC 2 cut(s) 50, 450
Sau3AI GATC 5 cut(s) 394, 614, 790, 804, 831
Sau96I GGNCC 3 cut(s) 106, 130, 165
SchI GAGTC 1 cut(s) 863
ScrFI CCNGG 5 cut(s) 133, 143, 532, 716, 747
SetI ASST 7 cut(s) 80, 225, 451, 533, 609, 696, 813
SexAI ACCWGGT 1 cut(s) 530
SinI GGWCC 1 cut(s) 106
SmiMI CAYNNNNRTG 1 cut(s) 660
SsiI CCGC 2 cut(s) 153, 855
SspI AATATT 2 cut(s) 731, 818
SspMI CTAG 2 cut(s) 326, 888
StyD4I CCNGG 5 cut(s) 131, 141, 530, 714, 745
StyI CCWWGG 2 cut(s) 336, 607
TaaI ACNGT 1 cut(s) 511
TaqI TCGA 7 cut(s) 185, 228, 356, 377, 397, 821, 834
TatI WGTACW 2 cut(s) 99, 839
TfiI GAWTC 1 cut(s) 428
Tru1I TTAA 1 cut(s) 546
Tru9I TTAA 1 cut(s) 546
TscAI CASTG 2 cut(s) 516, 687
TseFI GTSAC 1 cut(s) 710
TseI GCWGC 2 cut(s) 49, 449
Tsp45I GTSAC 1 cut(s) 710
TspDTI ATGAA 6 cut(s) 163, 246, 338, 403, 441, 650
TspGWI ACGGA 1 cut(s) 50
TspRI CASTG 2 cut(s) 516, 687
Tth111I GACNNNGTC 1 cut(s) 630
VpaK11BI GGWCC 1 cut(s) 106
XapI RAATTY 3 cut(s) 250, 318, 409
XceI RCATGY 1 cut(s) 659
XmiI GTMKAC 1 cut(s) 867
XspI CTAG 2 cut(s) 326, 888
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.