Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0016492

Physical Location & Seq

Genomic Coordinates Reverse (-)

19368798 .. 19370478

Gene Structure 1681 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G47180.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1035 bp

ATGGCTCCGGGGCTTACTCAAACCGCTGATGCTATGTCCACCGTGACGATAACAAAACCGTCACTGCCATCAGTCCAAGACAGCGATCGAGCTTACGTGACGTTTCTTGCTGGAAACGGTGATTACGTGAAAGGAGTCGTTGGTTTAGCCAAAGGGTTAAGGAAAGTCAAATCGGCTTATCCACTCGTAGTAGCGATGTTACCCGACGTCCCGGAGGAACACCGTCGTATACTTGTGGATCAAGGATGCATCGTCCGTGAAATCGAACCCGTTTACCCACCCGAGAACCAAACTCAGTTCGCCATGGCTTATTACGTCATCAACTACTCTAAACTCCGTATCTGGAAGTTTGTGGAGTATAGTAAAATGATATATTTAGATGGAGACATTCAAGTTTACGAAAACATCGATCACTTGTTTGACCTACCAGATGGCTATTTGTACGCGGTGATGGATTGTTTCTGTGAGAAAACATGGAGTCACACGCCGCAATACAAGATCAGATATTGCCAACAATGCCCCGACAAAGTCCAGTGGCCAAAAGCGGAGCTTGGAGAGCCACCGGCTCTTTACTTCAACGCCGGAATGTTCTTGTACGAGCCTAACCTCGAGACTTACGAGGATCTACTACGAACACTTAAAATCACTCCTCCGACTCCTTTCGCTGAACAGGATTTTTTGAACATGTACTTTAAGAAAATCTACAAGCCGATTCCTTTAGTGTACAATCTCGTCCTTGCGATGTTATGGCGTCACCCAGAAAATGTAGAGCTTGGAAAAGTCAAGGTGGTTCACTACTGTGCAGCGGGTTCGAAGCCGTGGAGATACACAGGGAAAGAAGCGAACATGGAGAGGGAAGATATAAAAATGTTAGTGAAAAAATGGTGGGACATTTACGACGACGAATCCTTGGATTACAAGAAACCTGTTACCGTTGTGGACACAGAGGTCGATCTCGTGAATCTGAAGCCGTTCATCACCGCTCTTACTGAAGCTGGCCGGCTCAACTACGTGACCGCACCGTCCGCTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0000302 GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005975 GO:0005976 GO:0005977 GO:0005978 GO:0005996 GO:0006012 GO:0006073 GO:0006091 GO:0006112 GO:0006950 GO:0006970 GO:0006979 GO:0008150 GO:0008152 GO:0008194 GO:0008378 GO:0008466 GO:0009058 GO:0009059 GO:0009250 GO:0009266 GO:0009314 GO:0009408 GO:0009409 GO:0009414 GO:0009415 GO:0009416 GO:0009628 GO:0009636 GO:0009642 GO:0009644 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0010035 GO:0015980 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0019318 GO:0033692 GO:0033993 GO:0034637 GO:0034645 GO:0035250 GO:0035251 GO:0042221 GO:0042493 GO:0042542 GO:0043170 GO:0044042 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046527 GO:0046677 GO:0047216 GO:0050896 GO:0055114 GO:0071704 GO:0097305 GO:1901576 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00052 map00052

Pfam Domains

Protein Families

Glyco_transf_8

Protein Analysis

344

Amino Acids

39.6

Weight (kDa)

5.54

Isoelectric Point (pI)

30.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_transf_8	PF01501	34 - 277	9.1e-46	Glycosyl transferase family 8

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016492)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47180
fragaria_vesca	FvH4_1g26560
malus_domestica	MD09G1288100.v1.1 MD17G1280400.v1.1
prunus_persica	Prupe.3G005100_v2.0.a1
pyrus_communis	pycom09g19550 pycom17g27830
rosa_chinensis	RchiOBHm_Chr3g0486641
rosa_laevigata	RLG00000023070
rosa_multiflora	Rmu_sc0000261.1_g000006
rosa_rugosa	Rorug03G0226200
rosa_samantha	Rh3AG275700 Rh3DG306800
rosa_wichuraiana	Rw3G024570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	947, 1021
AatII	GACGTC	1 cut(s)	210
AccBSI	CCGCTC	1 cut(s)	983
AccI	GTMKAC	1 cut(s)	229
AccII	CGCG	1 cut(s)	446
AciI	CCGC	8 cut(s)	24, 446, 488, 545, 806, 981, 1017, 1026
AclWI	GGATC	2 cut(s)	246, 630
AcoI	YGGCCR	2 cut(s)	536, 997
AcuI	CTGAAG	2 cut(s)	986, 1011
AcyI	GRCGYC	2 cut(s)	207, 751
AfaI	GTAC	4 cut(s)	443, 596, 689, 725
AflIII	ACRYGT	1 cut(s)	684
AgsI	TTSAA	3 cut(s)	392, 577, 682
AleI	CACNNNNGTG	1 cut(s)	798
AluBI	AGCT	4 cut(s)	92, 550, 772, 995
AluI	AGCT	4 cut(s)	92, 550, 772, 995
Alw26I	GTCTC	2 cut(s)	378, 605
AlwI	GGATC	2 cut(s)	246, 630
Ama87I	CYCGRG	2 cut(s)	281, 608
AoxI	GGCC	2 cut(s)	536, 997
ApeKI	GCWGC	2 cut(s)	803, 1028
Asp700I	GAANNNNTTC	1 cut(s)	971
AsuC2I	CCSGG	2 cut(s)	9, 212
AsuHPI	GGTGA	4 cut(s)	131, 460, 746, 970
AsuII	TTCGAA	1 cut(s)	812
AvaI	CYCGRG	2 cut(s)	281, 608
BalI	TGGCCA	1 cut(s)	538
BauI	CACGAG	1 cut(s)	956
BbvI	GCAGC	2 cut(s)	815, 1015
BccI	CCATC	4 cut(s)	76, 374, 425, 445
BceAI	ACGGC	2 cut(s)	802, 955
BcgI	CGANNNNNNTGC	2 cut(s)	792, 826
BcnI	CCSGG	2 cut(s)	9, 212
BcoDI	GTCTC	2 cut(s)	378, 605
BisI	GCNGC	3 cut(s)	488, 804, 1029
BlsI	GCNGC	3 cut(s)	489, 805, 1030
Bme1390I	CCNGG	2 cut(s)	9, 212
BmeT110I	CYCGRG	2 cut(s)	281, 608
BmiI	GGNNCC	1 cut(s)	6
BmrFI	CCNGG	2 cut(s)	9, 212
BmsI	GCATC	3 cut(s)	19, 236, 258
Bpu14I	TTCGAA	1 cut(s)	812
BpuMI	CCSGG	2 cut(s)	9, 212
Bsa29I	ATCGAT	1 cut(s)	408
BsaAI	YACGTR	3 cut(s)	97, 127, 1012
BsaHI	GRCGYC	2 cut(s)	207, 751
BsaJI	CCNNGG	4 cut(s)	8, 303, 818, 909
Bse118I	RCCGGY	2 cut(s)	562, 999
Bse1I	ACTGG	1 cut(s)	532
BseCI	ATCGAT	1 cut(s)	408
BseDI	CCNNGG	4 cut(s)	8, 303, 818, 909
BseGI	GGATG	1 cut(s)	251
BseMII	CTCAG	1 cut(s)	308
BseNI	ACTGG	1 cut(s)	532
BseRI	GAGGAG	1 cut(s)	639
BseXI	GCAGC	2 cut(s)	815, 1015
BsgI	GTGCAG	1 cut(s)	822
Bsh1236I	CGCG	1 cut(s)	446
Bsh1285I	CGRYCG	1 cut(s)	88
BshFI	GGCC	2 cut(s)	538, 999
BshVI	ATCGAT	1 cut(s)	408
BsiEI	CGRYCG	1 cut(s)	88
BsiHKCI	CYCGRG	2 cut(s)	281, 608
BsiSI	CCGG	5 cut(s)	8, 212, 563, 582, 1000
BslFI	GGGAC	2 cut(s)	194, 902
BsmAI	GTCTC	2 cut(s)	378, 605
BsmFI	GGGAC	2 cut(s)	194, 902
BsnI	GGCC	2 cut(s)	538, 999
BsoBI	CYCGRG	2 cut(s)	281, 608
Bsp119I	TTCGAA	1 cut(s)	812
Bsp1407I	TGTACA	1 cut(s)	723
Bsp143I	GATC	6 cut(s)	85, 238, 409, 498, 622, 952
Bsp19I	CCATGG	1 cut(s)	303
BspACI	CCGC	8 cut(s)	24, 446, 488, 545, 806, 981, 1017, 1026
BspANI	GGCC	2 cut(s)	538, 999
BspCNI	CTCAG	1 cut(s)	307
BspDI	ATCGAT	1 cut(s)	408
BspFNI	CGCG	1 cut(s)	446
BspLI	GGNNCC	1 cut(s)	6
BspPI	GGATC	2 cut(s)	246, 630
BspT104I	TTCGAA	1 cut(s)	812
BsrBI	CCGCTC	1 cut(s)	983
BsrFI	RCCGGY	2 cut(s)	562, 999
BsrGI	TGTACA	1 cut(s)	723
BsrI	ACTGG	1 cut(s)	532
BssAI	RCCGGY	2 cut(s)	562, 999
BssECI	CCNNGG	4 cut(s)	8, 303, 818, 909
BssMI	GATC	6 cut(s)	85, 238, 409, 498, 622, 952
BssNAI	GTATAC	1 cut(s)	230
BssNI	GRCGYC	2 cut(s)	207, 751
BssSI	CACGAG	1 cut(s)	956
BssT1I	CCWWGG	2 cut(s)	303, 909
Bst1107I	GTATAC	1 cut(s)	230
Bst2BI	CACGAG	1 cut(s)	956
Bst4CI	ACNGT	7 cut(s)	43, 60, 119, 224, 800, 934, 1023
BstACI	GRCGYC	2 cut(s)	207, 751
BstAUI	TGTACA	1 cut(s)	723
BstBAI	YACGTR	3 cut(s)	97, 127, 1012
BstBI	TTCGAA	1 cut(s)	812
BstC8I	GCNNGC	2 cut(s)	997, 1001
BstDEI	CTNAG	1 cut(s)	294
BstDSI	CCRYGG	2 cut(s)	303, 818
BstF5I	GGATG	1 cut(s)	251
BstFNI	CGCG	1 cut(s)	446
BstKTI	GATC	6 cut(s)	88, 241, 412, 501, 625, 955
BstMAI	GTCTC	2 cut(s)	378, 605
BstMBI	GATC	6 cut(s)	85, 238, 409, 498, 622, 952
BstMCI	CGRYCG	1 cut(s)	88
BstMWI	GCNNNNNNNGC	3 cut(s)	516, 556, 1025
BstNSI	RCATGY	1 cut(s)	688
BstSCI	CCNGG	2 cut(s)	7, 210
BstUI	CGCG	1 cut(s)	446
BstV1I	GCAGC	2 cut(s)	815, 1015
BstX2I	RGATCY	1 cut(s)	622
BstYI	RGATCY	1 cut(s)	622
BstZ17I	GTATAC	1 cut(s)	230
Bsu15I	ATCGAT	1 cut(s)	408
BsuRI	GGCC	2 cut(s)	538, 999
BsuTUI	ATCGAT	1 cut(s)	408
BtgI	CCRYGG	2 cut(s)	303, 818
BtgZI	GCGATG	2 cut(s)	209, 755
BtsCI	GGATG	1 cut(s)	251
BtsI	GCAGTG	1 cut(s)	62
BtsIMutI	CAGTG	2 cut(s)	62, 539
Cac8I	GCNNGC	2 cut(s)	997, 1001
Cfr10I	RCCGGY	2 cut(s)	562, 999
ClaI	ATCGAT	1 cut(s)	408
CseI	GACGC	1 cut(s)	740
Csp6I	GTAC	4 cut(s)	442, 595, 688, 724
CviAII	CATG	4 cut(s)	304, 474, 685, 847
CviQI	GTAC	4 cut(s)	442, 595, 688, 724
DdeI	CTNAG	1 cut(s)	294
DpnI	GATC	6 cut(s)	87, 240, 411, 500, 624, 954
DpnII	GATC	6 cut(s)	85, 238, 409, 498, 622, 952
DrdI	GACNNNNNNGTC	2 cut(s)	947, 1021
DseDI	GACNNNNNNGTC	2 cut(s)	947, 1021
EaeI	YGGCCR	2 cut(s)	536, 997
Eco130I	CCWWGG	2 cut(s)	303, 909
Eco57I	CTGAAG	2 cut(s)	986, 1011
Eco88I	CYCGRG	2 cut(s)	281, 608
EcoT14I	CCWWGG	2 cut(s)	303, 909
EcoT22I	ATGCAT	1 cut(s)	251
ErhI	CCWWGG	2 cut(s)	303, 909
FaeI	CATG	4 cut(s)	307, 477, 688, 850
FalI	AAGNNNNNCTT	2 cut(s)	534, 566
FaqI	GGGAC	2 cut(s)	194, 902
FatI	CATG	4 cut(s)	303, 473, 684, 846
FauI	CCCGC	1 cut(s)	799
FblI	GTMKAC	1 cut(s)	229
Fnu4HI	GCNGC	3 cut(s)	488, 804, 1029
FokI	GGATG	1 cut(s)	258
Fsp4HI	GCNGC	3 cut(s)	488, 804, 1029
GluI	GCNGC	3 cut(s)	488, 804, 1029
HaeIII	GGCC	2 cut(s)	538, 999
HapII	CCGG	5 cut(s)	8, 212, 563, 582, 1000
HgaI	GACGC	1 cut(s)	740
Hin1I	GRCGYC	2 cut(s)	207, 751
Hin1II	CATG	4 cut(s)	307, 477, 688, 850
HinfI	GANTC	6 cut(s)	135, 478, 655, 712, 905, 961
HpaII	CCGG	5 cut(s)	8, 212, 563, 582, 1000
HphI	GGTGA	4 cut(s)	131, 460, 746, 970
Hpy166II	GTNNAC	7 cut(s)	39, 230, 274, 397, 724, 793, 940
Hpy188I	TCNGA	3 cut(s)	503, 654, 966
Hpy188III	TCNNGA	3 cut(s)	343, 610, 958
Hpy8I	GTNNAC	7 cut(s)	39, 230, 274, 397, 724, 793, 940
Hpy99I	CGWCG	4 cut(s)	209, 228, 902, 905
HpyCH4III	ACNGT	7 cut(s)	43, 60, 119, 224, 800, 934, 1023
HpyCH4IV	ACGT	6 cut(s)	96, 101, 126, 207, 315, 1011
HpyCH4V	TGCA	2 cut(s)	249, 803
HpyF10VI	GCNNNNNNNGC	3 cut(s)	516, 556, 1025
HpyF3I	CTNAG	1 cut(s)	294
HpySE526I	ACGT	6 cut(s)	96, 101, 126, 207, 315, 1011
Hsp92I	GRCGYC	2 cut(s)	207, 751
Hsp92II	CATG	4 cut(s)	307, 477, 688, 850
KroI	GCCGGC	1 cut(s)	999
KroNI	GCCGGC	1 cut(s)	1001
Kzo9I	GATC	6 cut(s)	85, 238, 409, 498, 622, 952
LmnI	GCTCC	2 cut(s)	10, 547
Lsp1109I	GCAGC	2 cut(s)	815, 1015
LweI	GCATC	3 cut(s)	19, 236, 258
MaeII	ACGT	6 cut(s)	96, 101, 126, 207, 315, 1011
MaeIII	GTNAC	8 cut(s)	43, 60, 97, 198, 479, 752, 928, 1012
MalI	GATC	6 cut(s)	87, 240, 411, 500, 624, 954
MbiI	CCGCTC	1 cut(s)	983
MboI	GATC	6 cut(s)	85, 238, 409, 498, 622, 952
MboII	GAAGA	1 cut(s)	869
MflI	RGATCY	1 cut(s)	622
MlsI	TGGCCA	1 cut(s)	538
MluNI	TGGCCA	1 cut(s)	538
MlyI	GAGTC	3 cut(s)	144, 487, 649
MmeI	TCCRAC	1 cut(s)	677
MnlI	CCTC	6 cut(s)	208, 613, 617, 660, 846, 940
Mox20I	TGGCCA	1 cut(s)	538
Mph1103I	ATGCAT	1 cut(s)	251
MroNI	GCCGGC	1 cut(s)	999
MroXI	GAANNNNTTC	1 cut(s)	971
MscI	TGGCCA	1 cut(s)	538
MseI	TTAA	3 cut(s)	158, 639, 693
MslI	CAYNNNNRTG	1 cut(s)	798
Msp20I	TGGCCA	1 cut(s)	538
MspA1I	CMGCKG	3 cut(s)	26, 806, 1028
MspI	CCGG	5 cut(s)	8, 212, 563, 582, 1000
MspR9I	CCNGG	2 cut(s)	9, 212
MvnI	CGCG	1 cut(s)	446
MwoI	GCNNNNNNNGC	3 cut(s)	516, 556, 1025
NaeI	GCCGGC	1 cut(s)	1001
NciI	CCSGG	2 cut(s)	9, 212
NcoI	CCATGG	1 cut(s)	303
NdeII	GATC	6 cut(s)	85, 238, 409, 498, 622, 952
NgoMIV	GCCGGC	1 cut(s)	999
NlaIII	CATG	4 cut(s)	307, 477, 688, 850
NlaIV	GGNNCC	1 cut(s)	6
NmuCI	GTSAC	6 cut(s)	43, 60, 97, 479, 752, 1012
NsiI	ATGCAT	1 cut(s)	251
NspI	RCATGY	1 cut(s)	688
NspV	TTCGAA	1 cut(s)	812
OliI	CACNNNNGTG	1 cut(s)	798
PaeR7I	CTCGAG	1 cut(s)	608
PciI	ACATGT	1 cut(s)	684
PcsI	WCGNNNNNNNCGW	3 cut(s)	123, 405, 615
PdiI	GCCGGC	1 cut(s)	1001
PdmI	GAANNNNTTC	1 cut(s)	971
PfeI	GAWTC	3 cut(s)	712, 905, 961
PflFI	GACNNNGTC	1 cut(s)	527
PfoI	TCCNGGA	1 cut(s)	210
PkrI	GCNGC	3 cut(s)	489, 805, 1030
Ple19I	CGATCG	1 cut(s)	88
PleI	GAGTC	3 cut(s)	143, 486, 649
PpsI	GAGTC	3 cut(s)	143, 486, 649
Ppu21I	YACGTR	3 cut(s)	97, 127, 1012
PscI	ACATGT	1 cut(s)	684
PspN4I	GGNNCC	1 cut(s)	6
PsuI	RGATCY	1 cut(s)	622
PsyI	GACNNNGTC	1 cut(s)	527
PvuI	CGATCG	1 cut(s)	88
RsaI	GTAC	4 cut(s)	443, 596, 689, 725
RsaNI	GTAC	4 cut(s)	442, 595, 688, 724
RseI	CAYNNNNRTG	1 cut(s)	798
SaqAI	TTAA	3 cut(s)	158, 639, 693
SatI	GCNGC	3 cut(s)	488, 804, 1029
Sau3AI	GATC	6 cut(s)	85, 238, 409, 498, 622, 952
SchI	GAGTC	3 cut(s)	144, 487, 649
ScrFI	CCNGG	2 cut(s)	9, 212
SfaNI	GCATC	3 cut(s)	19, 236, 258
Sfr274I	CTCGAG	1 cut(s)	608
SfuI	TTCGAA	1 cut(s)	812
SlaI	CTCGAG	1 cut(s)	608
SmiMI	CAYNNNNRTG	1 cut(s)	798
SmlI	CTYRAG	1 cut(s)	608
SmoI	CTYRAG	1 cut(s)	608
SsiI	CCGC	8 cut(s)	24, 446, 488, 545, 806, 981, 1017, 1026
StyD4I	CCNGG	2 cut(s)	7, 210
StyI	CCWWGG	2 cut(s)	303, 909
TaaI	ACNGT	7 cut(s)	43, 60, 119, 224, 800, 934, 1023
TaiI	ACGT	6 cut(s)	99, 104, 129, 210, 318, 1014
TaqI	TCGA	6 cut(s)	88, 264, 408, 609, 812, 951
TatI	WGTACW	2 cut(s)	687, 723
TauI	GCSGC	1 cut(s)	490
TfiI	GAWTC	3 cut(s)	712, 905, 961
Tru1I	TTAA	3 cut(s)	158, 639, 693
Tru9I	TTAA	3 cut(s)	158, 639, 693
TscAI	CASTG	2 cut(s)	69, 539
TseFI	GTSAC	6 cut(s)	43, 60, 97, 479, 752, 1012
TseI	GCWGC	2 cut(s)	803, 1028
Tsp45I	GTSAC	6 cut(s)	43, 60, 97, 479, 752, 1012
TspDTI	ATGAA	1 cut(s)	964
TspGWI	ACGGA	2 cut(s)	245, 326
TspRI	CASTG	2 cut(s)	69, 539
Tth111I	GACNNNGTC	1 cut(s)	527
XceI	RCATGY	1 cut(s)	688
XhoI	CTCGAG	1 cut(s)	608
XmiI	GTMKAC	1 cut(s)	229
XmnI	GAANNNNTTC	1 cut(s)	971
ZraI	GACGTC	1 cut(s)	208
Zsp2I	ATGCAT	1 cut(s)	251

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.