Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0016492

Physical Location & Seq

Genomic Coordinates Reverse (-)

20403389 .. 20404503

Gene Structure 1115 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g19550.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 762 bp

ATGGCCTATTACGTCATCAACTACTCGAAGCTGCGGATTTGGGAGTTTGTGGAGTACGAGAAGATGATATACTTGGACGGGGACATTCAGGTGTACGATAACATAGACCACCTCTTTGACTTGCCAAATGGACATTTCTACGCCGTGATGGATTGTTTCTGTGAGAAAACGTGGAGTCACACGCCGCAATACCAAATCGGGTACTGCCAGCAGTGCCCGGAGAAGGTCCAGTGGCCCACATCGGAGCTTGGCCCACCGCCGTCGCTCTACTTCAATGCGGGCATGTTCGTGTACGAGCCCGGCCTCGAGACCTACTATGACCTTCTGAGGACTCTCAGAGGGACCCCTCCGACCCCGTTTGCAGAACAGGACTTGTTAAACATGTATTTCCGGAAAATATACAAGCCAATTCCTTTGGTTTACAATTTGGTCCTGGCCATGCTGTGGCGTCACCCGGAGAATGTGGAGCTAGACAAAGTTAAAGTCGTTCATTATTGTGCAGCAGGATCGAAGCCGTGGAGGTATACGGGGAAGGAGGAGAACATGCAGAGGGAGGACATTAAGATGGTGGTGAAGAAATGGTGGGATATATACAACGACGAGTCGTTGGACTACAAGAAGGCAGCTGGAGGAGCAGGGGCAGGAGGAGTTGTGGGTCCAGCAGCAGCTTCAGGTGGTGAAGGGGTGAACATGCAGCCTTTCATGGAGGCTCTGTCGGAAGCAGCTGCGGTCCAGTGCGTGACAGCCCCCTCAGCGGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0000302 GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005975 GO:0005976 GO:0005977 GO:0005978 GO:0005996 GO:0006012 GO:0006073 GO:0006091 GO:0006112 GO:0006950 GO:0006970 GO:0006979 GO:0008150 GO:0008152 GO:0008194 GO:0008378 GO:0008466 GO:0009058 GO:0009059 GO:0009250 GO:0009266 GO:0009314 GO:0009408 GO:0009409 GO:0009414 GO:0009415 GO:0009416 GO:0009628 GO:0009636 GO:0009642 GO:0009644 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0010035 GO:0015980 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0019318 GO:0033692 GO:0033993 GO:0034637 GO:0034645 GO:0035250 GO:0035251 GO:0042221 GO:0042493 GO:0042542 GO:0043170 GO:0044042 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046527 GO:0046677 GO:0047216 GO:0050896 GO:0055114 GO:0071704 GO:0097305 GO:1901576 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00052 map00052

Pfam Domains

Protein Families

Glyco_transf_8

Protein Analysis

254

Amino Acids

28.91

Weight (kDa)

5.08

Isoelectric Point (pI)

33.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016492)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47180
fragaria_vesca	FvH4_1g26560
malus_domestica	MD09G1288100.v1.1 MD17G1280400.v1.1
prunus_persica	Prupe.3G005100_v2.0.a1
pyrus_communis	pycom09g19550 pycom17g27830
rosa_chinensis	RchiOBHm_Chr3g0486641
rosa_laevigata	RLG00000023070
rosa_multiflora	Rmu_sc0000261.1_g000006
rosa_rugosa	Rorug03G0226200
rosa_samantha	Rh3AG275700 Rh3DG306800
rosa_wichuraiana	Rw3G024570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	444
AccI	GTMKAC	1 cut(s)	524
AccIII	TCCGGA	1 cut(s)	390
AciI	CCGC	6 cut(s)	34, 185, 257, 278, 728, 755
AclWI	GGATC	1 cut(s)	514
AcoI	YGGCCR	1 cut(s)	435
AcuI	CTGAAG	1 cut(s)	654
AcyI	GRCGYC	1 cut(s)	448
AfaI	GTAC	4 cut(s)	56, 95, 203, 293
AfiI	CCNNNNNNNGG	3 cut(s)	223, 444, 754
AflIII	ACRYGT	1 cut(s)	381
AgsI	TTSAA	1 cut(s)	274
AjnI	CCWGG	1 cut(s)	432
AluBI	AGCT	6 cut(s)	31, 247, 469, 626, 668, 725
AluI	AGCT	6 cut(s)	31, 247, 469, 626, 668, 725
Alw26I	GTCTC	1 cut(s)	302
AlwI	GGATC	1 cut(s)	514
Ama87I	CYCGRG	1 cut(s)	305
Aor13HI	TCCGGA	1 cut(s)	390
AoxI	GGCC	5 cut(s)	3, 233, 250, 301, 435
ApeKI	GCWGC	8 cut(s)	31, 500, 623, 662, 665, 694, 722, 725
ArsI	GACNNNNNNTTYG	4 cut(s)	98, 130, 468, 500
AspS9I	GGNCC	7 cut(s)	226, 234, 251, 342, 430, 656, 730
AsuC2I	CCSGG	3 cut(s)	218, 300, 455
AsuHPI	GGTGA	4 cut(s)	443, 583, 689, 697
AvaI	CYCGRG	1 cut(s)	305
AvaII	GGWCC	5 cut(s)	226, 342, 430, 656, 730
BaeGI	GKGCMC	1 cut(s)	218
BalI	TGGCCA	1 cut(s)	437
BanII	GRGCYC	1 cut(s)	300
BarI	GAAGNNNNNNTAC	2 cut(s)	53, 85
BbvCI	CCTCAGC	1 cut(s)	751
BbvI	GCAGC	8 cut(s)	18, 512, 635, 674, 677, 706, 712, 734
BccI	CCATC	2 cut(s)	142, 559
BceAI	ACGGC	3 cut(s)	128, 244, 499
BcgI	CGANNNNNNTGC	2 cut(s)	489, 523
BciT130I	CCWGG	1 cut(s)	434
BcnI	CCSGG	3 cut(s)	218, 300, 455
BcoDI	GTCTC	1 cut(s)	302
BfaI	CTAG	1 cut(s)	470
Bme1390I	CCNGG	4 cut(s)	218, 300, 434, 455
Bme18I	GGWCC	5 cut(s)	226, 342, 430, 656, 730
BmeT110I	CYCGRG	1 cut(s)	305
BmgT120I	GGNCC	7 cut(s)	226, 234, 251, 342, 430, 656, 730
BmiI	GGNNCC	3 cut(s)	343, 344, 657
BmrFI	CCNGG	4 cut(s)	218, 300, 434, 455
BpmI	CTGGAG	1 cut(s)	648
Bpu10I	CCTNAGC	1 cut(s)	751
BpuMI	CCSGG	3 cut(s)	218, 300, 455
BsaHI	GRCGYC	1 cut(s)	448
BsaI	GGTCTC	1 cut(s)	302
BsaJI	CCNNGG	1 cut(s)	515
BsaWI	WCCGGW	1 cut(s)	390
BsaXI	ACNNNNNCTCC	4 cut(s)	636, 666, 698, 728
Bsc4I	CCNNNNNNNGG	3 cut(s)	223, 444, 754
Bse1I	ACTGG	2 cut(s)	229, 733
BseAI	TCCGGA	1 cut(s)	390
BseBI	CCWGG	1 cut(s)	434
BseDI	CCNNGG	1 cut(s)	515
BseLI	CCNNNNNNNGG	3 cut(s)	223, 444, 754
BseMII	CTCAG	2 cut(s)	317, 349
BseNI	ACTGG	2 cut(s)	229, 733
BseRI	GAGGAG	3 cut(s)	551, 645, 660
BseSI	GKGCMC	1 cut(s)	218
BseXI	GCAGC	8 cut(s)	18, 512, 635, 674, 677, 706, 712, 734
BsgI	GTGCAG	1 cut(s)	519
BshFI	GGCC	5 cut(s)	5, 235, 252, 303, 437
BsiHKCI	CYCGRG	1 cut(s)	305
BsiSI	CCGG	4 cut(s)	218, 300, 391, 455
BslFI	GGGAC	2 cut(s)	95, 355
BslI	CCNNNNNNNGG	3 cut(s)	223, 444, 754
BsmAI	GTCTC	1 cut(s)	302
BsmFI	GGGAC	2 cut(s)	95, 355
BsnI	GGCC	5 cut(s)	5, 235, 252, 303, 437
Bso31I	GGTCTC	1 cut(s)	302
BsoBI	CYCGRG	1 cut(s)	305
Bsp1286I	GDGCHC	2 cut(s)	218, 300
Bsp13I	TCCGGA	1 cut(s)	390
Bsp143I	GATC	1 cut(s)	506
BspACI	CCGC	6 cut(s)	34, 185, 257, 278, 728, 755
BspANI	GGCC	5 cut(s)	5, 235, 252, 303, 437
BspCNI	CTCAG	2 cut(s)	318, 348
BspEI	TCCGGA	1 cut(s)	390
BspLI	GGNNCC	3 cut(s)	343, 344, 657
BspPI	GGATC	1 cut(s)	514
BspTNI	GGTCTC	1 cut(s)	302
BsrI	ACTGG	2 cut(s)	229, 733
BssECI	CCNNGG	1 cut(s)	515
BssMI	GATC	1 cut(s)	506
BssNAI	GTATAC	1 cut(s)	525
BssNI	GRCGYC	1 cut(s)	448
Bst1107I	GTATAC	1 cut(s)	525
Bst2UI	CCWGG	1 cut(s)	434
BstACI	GRCGYC	1 cut(s)	448
BstC8I	GCNNGC	2 cut(s)	209, 280
BstDEI	CTNAG	4 cut(s)	326, 335, 751, 759
BstDSI	CCRYGG	1 cut(s)	515
BstKTI	GATC	1 cut(s)	509
BstMAI	GTCTC	1 cut(s)	302
BstMBI	GATC	1 cut(s)	506
BstMWI	GCNNNNNNNGC	3 cut(s)	213, 632, 752
BstNI	CCWGG	1 cut(s)	434
BstNSI	RCATGY	4 cut(s)	286, 385, 547, 694
BstSCI	CCNGG	4 cut(s)	216, 298, 432, 453
BstSLI	GKGCMC	1 cut(s)	218
BstV1I	GCAGC	8 cut(s)	18, 512, 635, 674, 677, 706, 712, 734
BstZ17I	GTATAC	1 cut(s)	525
BsuRI	GGCC	5 cut(s)	5, 235, 252, 303, 437
BtgI	CCRYGG	1 cut(s)	515
BtsI	GCAGTG	1 cut(s)	218
BtsIMutI	CAGTG	3 cut(s)	218, 236, 740
Cac8I	GCNNGC	2 cut(s)	209, 280
Cfr13I	GGNCC	7 cut(s)	226, 234, 251, 342, 430, 656, 730
CseI	GACGC	1 cut(s)	437
Csp6I	GTAC	4 cut(s)	55, 94, 202, 292
CviAII	CATG	6 cut(s)	283, 382, 439, 544, 691, 703
CviQI	GTAC	4 cut(s)	55, 94, 202, 292
DdeI	CTNAG	4 cut(s)	326, 335, 751, 759
DpnI	GATC	1 cut(s)	508
DpnII	GATC	1 cut(s)	506
EaeI	YGGCCR	1 cut(s)	435
Eco24I	GRGCYC	1 cut(s)	300
Eco31I	GGTCTC	1 cut(s)	302
Eco47I	GGWCC	5 cut(s)	226, 342, 430, 656, 730
Eco57I	CTGAAG	1 cut(s)	654
Eco88I	CYCGRG	1 cut(s)	305
EcoO109I	RGGNCCY	1 cut(s)	342
EcoRII	CCWGG	1 cut(s)	432
EcoT38I	GRGCYC	1 cut(s)	300
FaeI	CATG	6 cut(s)	286, 385, 442, 547, 694, 706
FaqI	GGGAC	2 cut(s)	95, 355
FatI	CATG	6 cut(s)	282, 381, 438, 543, 690, 702
FauI	CCCGC	1 cut(s)	271
FblI	GTMKAC	1 cut(s)	524
FriOI	GRGCYC	1 cut(s)	300
FspBI	CTAG	1 cut(s)	470
GsuI	CTGGAG	1 cut(s)	648
HaeIII	GGCC	5 cut(s)	5, 235, 252, 303, 437
HapII	CCGG	4 cut(s)	218, 300, 391, 455
HgaI	GACGC	1 cut(s)	437
Hin1I	GRCGYC	1 cut(s)	448
Hin1II	CATG	6 cut(s)	286, 385, 442, 547, 694, 706
HinfI	GANTC	3 cut(s)	175, 331, 602
HpaII	CCGG	4 cut(s)	218, 300, 391, 455
HphI	GGTGA	4 cut(s)	443, 583, 689, 697
Hpy166II	GTNNAC	5 cut(s)	94, 292, 421, 525, 688
Hpy188I	TCNGA	5 cut(s)	244, 327, 338, 351, 718
Hpy188III	TCNNGA	2 cut(s)	307, 391
Hpy8I	GTNNAC	5 cut(s)	94, 292, 421, 525, 688
Hpy99I	CGWCG	2 cut(s)	265, 602
HpyAV	CCTTC	5 cut(s)	217, 332, 526, 613, 674
HpyCH4IV	ACGT	2 cut(s)	12, 170
HpyCH4V	TGCA	4 cut(s)	362, 500, 547, 694
HpyF10VI	GCNNNNNNNGC	3 cut(s)	213, 632, 752
HpyF3I	CTNAG	4 cut(s)	326, 335, 751, 759
HpySE526I	ACGT	2 cut(s)	12, 170
Hsp92I	GRCGYC	1 cut(s)	448
Hsp92II	CATG	6 cut(s)	286, 385, 442, 547, 694, 706
KflI	GGGWCCC	1 cut(s)	342
Kpn2I	TCCGGA	1 cut(s)	390
Kzo9I	GATC	1 cut(s)	506
LmnI	GCTCC	3 cut(s)	244, 466, 632
Lsp1109I	GCAGC	8 cut(s)	18, 512, 635, 674, 677, 706, 712, 734
MaeI	CTAG	1 cut(s)	470
MaeII	ACGT	2 cut(s)	12, 170
MaeIII	GTNAC	3 cut(s)	176, 449, 739
MalI	GATC	1 cut(s)	508
MboI	GATC	1 cut(s)	506
MboII	GAAGA	2 cut(s)	73, 586
MhlI	GDGCHC	2 cut(s)	218, 300
MlsI	TGGCCA	1 cut(s)	437
MluCI	AATT	2 cut(s)	408, 424
MluNI	TGGCCA	1 cut(s)	437
MlyI	GAGTC	3 cut(s)	184, 325, 611
MmeI	TCCRAC	3 cut(s)	374, 588, 696
Mox20I	TGGCCA	1 cut(s)	437
MroI	TCCGGA	1 cut(s)	390
MscI	TGGCCA	1 cut(s)	437
MseI	TTAA	3 cut(s)	377, 480, 561
MslI	CAYNNNNRTG	4 cut(s)	89, 287, 495, 563
Msp20I	TGGCCA	1 cut(s)	437
MspA1I	CMGCKG	3 cut(s)	626, 725, 755
MspI	CCGG	4 cut(s)	218, 300, 391, 455
MspR9I	CCNGG	4 cut(s)	218, 300, 434, 455
MvaI	CCWGG	1 cut(s)	434
MwoI	GCNNNNNNNGC	3 cut(s)	213, 632, 752
NciI	CCSGG	3 cut(s)	218, 300, 455
NdeII	GATC	1 cut(s)	506
NlaIII	CATG	6 cut(s)	286, 385, 442, 547, 694, 706
NlaIV	GGNNCC	3 cut(s)	343, 344, 657
NmuCI	GTSAC	3 cut(s)	176, 449, 739
NspI	RCATGY	4 cut(s)	286, 385, 547, 694
PaeR7I	CTCGAG	1 cut(s)	305
PciI	ACATGT	1 cut(s)	381
PflMI	CCANNNNNTGG	1 cut(s)	444
PleI	GAGTC	3 cut(s)	183, 325, 610
PpsI	GAGTC	3 cut(s)	183, 325, 610
PpuMI	RGGWCCY	1 cut(s)	342
PscI	ACATGT	1 cut(s)	381
Psp5II	RGGWCCY	1 cut(s)	342
Psp6I	CCWGG	1 cut(s)	432
PspGI	CCWGG	1 cut(s)	432
PspN4I	GGNNCC	3 cut(s)	343, 344, 657
PspPI	GGNCC	7 cut(s)	226, 234, 251, 342, 430, 656, 730
PspPPI	RGGWCCY	1 cut(s)	342
PvuII	CAGCTG	2 cut(s)	626, 725
RsaI	GTAC	4 cut(s)	56, 95, 203, 293
RsaNI	GTAC	4 cut(s)	55, 94, 202, 292
RseI	CAYNNNNRTG	4 cut(s)	89, 287, 495, 563
SaqAI	TTAA	3 cut(s)	377, 480, 561
Sau3AI	GATC	1 cut(s)	506
Sau96I	GGNCC	7 cut(s)	226, 234, 251, 342, 430, 656, 730
SchI	GAGTC	3 cut(s)	184, 325, 611
ScrFI	CCNGG	4 cut(s)	218, 300, 434, 455
SduI	GDGCHC	2 cut(s)	218, 300
Sfr274I	CTCGAG	1 cut(s)	305
SinI	GGWCC	5 cut(s)	226, 342, 430, 656, 730
SlaI	CTCGAG	1 cut(s)	305
SmiMI	CAYNNNNRTG	4 cut(s)	89, 287, 495, 563
SmlI	CTYRAG	1 cut(s)	305
SmoI	CTYRAG	1 cut(s)	305
Sse9I	AATT	2 cut(s)	408, 424
SsiI	CCGC	6 cut(s)	34, 185, 257, 278, 728, 755
SspMI	CTAG	1 cut(s)	470
StyD4I	CCNGG	4 cut(s)	216, 298, 432, 453
TaiI	ACGT	2 cut(s)	15, 173
TaqI	TCGA	3 cut(s)	26, 306, 509
TasI	AATT	2 cut(s)	408, 424
TauI	GCSGC	2 cut(s)	187, 758
Tru1I	TTAA	3 cut(s)	377, 480, 561
Tru9I	TTAA	3 cut(s)	377, 480, 561
TscAI	CASTG	3 cut(s)	218, 236, 740
TseFI	GTSAC	3 cut(s)	176, 449, 739
TseI	GCWGC	8 cut(s)	31, 500, 623, 662, 665, 694, 722, 725
Tsp45I	GTSAC	3 cut(s)	176, 449, 739
TspDTI	ATGAA	2 cut(s)	479, 691
TspRI	CASTG	3 cut(s)	218, 236, 740
Van91I	CCANNNNNTGG	1 cut(s)	444
VpaK11BI	GGWCC	5 cut(s)	226, 342, 430, 656, 730
XceI	RCATGY	4 cut(s)	286, 385, 547, 694
XhoI	CTCGAG	1 cut(s)	305
XmiI	GTMKAC	1 cut(s)	524
XspI	CTAG	1 cut(s)	470

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.