FvH4_1g26560

Belongs to the glycosyltransferase 8 family

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
Physical Location & Seq
Forward (+)
18383144 .. 18384920
1777 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g26560.t1

Sequence Viewer

Length: 1026 bp
ATGGCTCCCGAGCTCGTTCCCGCCGTCCCGAAATCCACGGCTCTCACAAGACCCGCCACTCTTCCGAGACGTGCTTACGTCACTTTCTTGGCCGGCAACGGCGACTACGTGAAAGGCGTTGTCGGGTTGGCCAAGGGCTTGAGGAAGGTCAACACGGCGTACCCTTTAGTCGTTGCGGTCTTGCCCGACGTCCCTGAAGACCACCGCCGCATTCTTGAGTCGCAGGGTTGCATTGTCCGGGAAATCGAGCCCGTTTACCCGCCGGAGAACCAGACACAGTTCGCCATGGCCTATTACGTCATCAACTACTCCAAGCTTCGTATATGGGAGTTTGTGGAATACGACAAGATGATATATCTGGACGGGGACATTCAGGTGTACGACAATATAGACCACCTGTTTGACCTGCCGGACGGCAACTTCTACGCCGTCATGGACTGTTTCTGCGAGAAGACTTGGAGCCACACGCCGCAGTACAAGATCGGGTACTGCCAGCAGTGCCCGGAGAGAGTCAAGTGGGACTTCGAACTTGGCCCACCGCCGTCGCTCTACTTCAACGCTGGGATGTTCGTATTCGAGCCCAGCGTCTTGACCTACCAAGATCTGTTGAAGACACTCAGGGTCGCTCCGACGACGCCGTTTGCCGAGCAGGATTTCTTGAACATGTATTTCAGGGATATTTACAAGCCGATCCCTAACGTTTACAATTTGGTACTGGCCATGTTGTGGCGTCACCCCGAGAATGTTCAGCTCGAGAAAGTGAAAGTCGTGCACTACTGTGCGGCAGGATCAAAGCCATGGAGGTATACTGGGAAGGAAGAGAACATGGAGAGGGAGGACATTAAGATGTTGGTGCAGAAGTGGTGGGAGATTTACAACGACGAGTCGTTGGACTACAAGAAGCCGCAGAGCAGCACTGTGGTTGCGGCGGTAGAGGCTGAGCAAGCGGTGGACATGCAGCCTTTCATTGAGGCTCTATCTGAAGCCGGTGCTTTCCAGTATGTGAATGTCCCTTCTGCGGCTTAG

Protein Analysis

342

Amino Acids

39.26

Weight (kDa)

5.07

Isoelectric Point (pI)

45.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_transf_8 PF01501 28 - 270 3.2e-44 Glycosyl transferase family 8
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0016492)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G47180
fragaria_vesca FvH4_1g26560
malus_domestica MD09G1288100.v1.1 MD17G1280400.v1.1
prunus_persica Prupe.3G005100_v2.0.a1
pyrus_communis pycom09g19550 pycom17g27830
rosa_chinensis RchiOBHm_Chr3g0486641
rosa_laevigata RLG00000023070
rosa_multiflora Rmu_sc0000261.1_g000006
rosa_rugosa Rorug03G0226200
rosa_samantha Rh3AG275700 Rh3DG306800
rosa_wichuraiana Rw3G024570

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 192
Acc36I ACCTGC 1 cut(s) 414
AccB7I CCANNNNNTGG 1 cut(s) 726
AccI GTMKAC 1 cut(s) 806
AclI AACGTT 1 cut(s) 699
AclWI GGATC 2 cut(s) 685, 796
AcoI YGGCCR 3 cut(s) 90, 129, 717
AcuI CTGAAG 2 cut(s) 216, 1002
AcyI GRCGYC 3 cut(s) 189, 635, 730
AfaI GTAC 5 cut(s) 161, 380, 476, 488, 714
AfiI CCNNNNNNNGG 2 cut(s) 726, 1018
AflIII ACRYGT 1 cut(s) 663
AgsI TTSAA 3 cut(s) 556, 610, 661
AjiI CACGTC 1 cut(s) 71
AleI CACNNNNGTG 1 cut(s) 777
AluBI AGCT 3 cut(s) 13, 316, 751
AluI AGCT 3 cut(s) 13, 316, 751
Alw21I GWGCWC 2 cut(s) 15, 774
Alw26I GTCTC 1 cut(s) 61
Alw44I GTGCAC 1 cut(s) 770
AlwI GGATC 2 cut(s) 685, 796
Ama87I CYCGRG 3 cut(s) 8, 737, 752
AoxI GGCC 5 cut(s) 90, 129, 288, 532, 717
ApaLI GTGCAC 1 cut(s) 770
ApeKI GCWGC 2 cut(s) 912, 958
ArsI GACNNNNNNTTYG 2 cut(s) 383, 415
AspS9I GGNCC 1 cut(s) 533
AsuC2I CCSGG 2 cut(s) 239, 503
AsuHPI GGTGA 1 cut(s) 725
AsuII TTCGAA 1 cut(s) 525
AvaI CYCGRG 3 cut(s) 8, 737, 752
BaeGI GKGCMC 2 cut(s) 503, 774
BalI TGGCCA 2 cut(s) 131, 719
BanII GRGCYC 3 cut(s) 15, 252, 582
BbsI GAAGAC 3 cut(s) 204, 458, 617
Bbv12I GWGCWC 2 cut(s) 15, 774
BbvI GCAGC 2 cut(s) 924, 970
BceAI ACGGC 8 cut(s) 8, 54, 115, 171, 413, 430, 526, 622
BcnI CCSGG 2 cut(s) 239, 503
BcoDI GTCTC 1 cut(s) 61
BfuAI ACCTGC 1 cut(s) 414
BglII AGATCT 1 cut(s) 601
BisI GCNGC 8 cut(s) 208, 470, 783, 905, 913, 927, 959, 1020
BlpI GCTNAGC 1 cut(s) 939
BlsI GCNGC 8 cut(s) 209, 471, 784, 906, 914, 928, 960, 1021
Bme1390I CCNGG 2 cut(s) 239, 503
BmeT110I CYCGRG 3 cut(s) 8, 737, 752
BmgBI CACGTC 1 cut(s) 71
BmgT120I GGNCC 1 cut(s) 533
BmiI GGNNCC 2 cut(s) 6, 461
BmrFI CCNGG 2 cut(s) 239, 503
BmrI ACTGGG 1 cut(s) 819
BmuI ACTGGG 1 cut(s) 819
BpiI GAAGAC 3 cut(s) 204, 458, 617
Bpu1102I GCTNAGC 1 cut(s) 939
Bpu14I TTCGAA 1 cut(s) 525
BpuEI CTTGAG 2 cut(s) 160, 236
BpuMI CCSGG 2 cut(s) 239, 503
BsaAI YACGTR 1 cut(s) 109
BsaHI GRCGYC 3 cut(s) 189, 635, 730
BsaJI CCNNGG 4 cut(s) 36, 132, 285, 797
Bsc4I CCNNNNNNNGG 2 cut(s) 726, 1018
Bse118I RCCGGY 2 cut(s) 92, 986
Bse1I ACTGG 3 cut(s) 720, 814, 997
BseDI CCNNGG 4 cut(s) 36, 132, 285, 797
BseGI GGATG 1 cut(s) 570
BseLI CCNNNNNNNGG 2 cut(s) 726, 1018
BseMII CTCAG 2 cut(s) 631, 930
BseNI ACTGG 3 cut(s) 720, 814, 997
BseSI GKGCMC 2 cut(s) 503, 774
BseXI GCAGC 2 cut(s) 924, 970
BseYI CCCAGC 2 cut(s) 560, 581
BsgI GTGCAG 1 cut(s) 875
BshFI GGCC 5 cut(s) 92, 131, 290, 534, 719
BsiHKAI GWGCWC 2 cut(s) 15, 774
BsiHKCI CYCGRG 3 cut(s) 8, 737, 752
BsiSI CCGG 6 cut(s) 93, 238, 263, 410, 503, 987
BslFI GGGAC 5 cut(s) 11, 176, 380, 533, 995
BslI CCNNNNNNNGG 2 cut(s) 726, 1018
BsmAI GTCTC 1 cut(s) 61
BsmBI CGTCTC 1 cut(s) 61
BsmFI GGGAC 5 cut(s) 11, 176, 380, 533, 995
BsmI GAATGC 1 cut(s) 210
BsnI GGCC 5 cut(s) 92, 131, 290, 534, 719
BsoBI CYCGRG 3 cut(s) 8, 737, 752
Bsp119I TTCGAA 1 cut(s) 525
Bsp1286I GDGCHC 5 cut(s) 15, 252, 503, 582, 774
Bsp143I GATC 4 cut(s) 480, 601, 690, 788
Bsp1720I GCTNAGC 1 cut(s) 939
Bsp19I CCATGG 2 cut(s) 285, 797
BspANI GGCC 5 cut(s) 92, 131, 290, 534, 719
BspCNI CTCAG 2 cut(s) 630, 931
BspLI GGNNCC 2 cut(s) 6, 461
BspMI ACCTGC 1 cut(s) 414
BspPI GGATC 2 cut(s) 685, 796
BspT104I TTCGAA 1 cut(s) 525
BsrFI RCCGGY 2 cut(s) 92, 986
BsrI ACTGG 3 cut(s) 720, 814, 997
BssAI RCCGGY 2 cut(s) 92, 986
BssECI CCNNGG 4 cut(s) 36, 132, 285, 797
BssMI GATC 4 cut(s) 480, 601, 690, 788
BssNAI GTATAC 1 cut(s) 807
BssNI GRCGYC 3 cut(s) 189, 635, 730
BssT1I CCWWGG 3 cut(s) 132, 285, 797
Bst1107I GTATAC 1 cut(s) 807
Bst4CI ACNGT 4 cut(s) 279, 440, 779, 919
Bst6I CTCTTC 2 cut(s) 66, 813
BstACI GRCGYC 3 cut(s) 189, 635, 730
BstBAI YACGTR 1 cut(s) 109
BstBI TTCGAA 1 cut(s) 525
BstC8I GCNNGC 3 cut(s) 94, 494, 945
BstDEI CTNAG 3 cut(s) 617, 939, 1023
BstDSI CCRYGG 3 cut(s) 36, 285, 797
BstF5I GGATG 1 cut(s) 570
BstKTI GATC 4 cut(s) 483, 604, 693, 791
BstMAI GTCTC 1 cut(s) 61
BstMBI GATC 4 cut(s) 480, 601, 690, 788
BstMWI GCNNNNNNNGC 3 cut(s) 498, 935, 944
BstNSI RCATGY 2 cut(s) 667, 958
BstSCI CCNGG 2 cut(s) 237, 501
BstSLI GKGCMC 2 cut(s) 503, 774
BstV1I GCAGC 2 cut(s) 924, 970
BstV2I GAAGAC 3 cut(s) 204, 458, 617
BstX2I RGATCY 1 cut(s) 601
BstYI RGATCY 1 cut(s) 601
BstZ17I GTATAC 1 cut(s) 807
BsuRI GGCC 5 cut(s) 92, 131, 290, 534, 719
BtgI CCRYGG 3 cut(s) 36, 285, 797
BtrI CACGTC 1 cut(s) 71
BtsCI GGATG 1 cut(s) 570
BtsI GCAGTG 1 cut(s) 503
BtsIMutI CAGTG 2 cut(s) 503, 915
BveI ACCTGC 1 cut(s) 414
Cac8I GCNNGC 3 cut(s) 94, 494, 945
Cfr10I RCCGGY 2 cut(s) 92, 986
Cfr13I GGNCC 1 cut(s) 533
CseI GACGC 3 cut(s) 574, 643, 719
Csp6I GTAC 5 cut(s) 160, 379, 475, 487, 713
CviAII CATG 7 cut(s) 286, 433, 664, 721, 798, 826, 955
CviQI GTAC 5 cut(s) 160, 379, 475, 487, 713
DdeI CTNAG 3 cut(s) 617, 939, 1023
DpnI GATC 4 cut(s) 482, 603, 692, 790
DpnII GATC 4 cut(s) 480, 601, 690, 788
EaeI YGGCCR 3 cut(s) 90, 129, 717
Eam1104I CTCTTC 2 cut(s) 66, 813
EarI CTCTTC 2 cut(s) 66, 813
Ecl136II GAGCTC 1 cut(s) 13
Eco130I CCWWGG 3 cut(s) 132, 285, 797
Eco24I GRGCYC 3 cut(s) 15, 252, 582
Eco53kI GAGCTC 1 cut(s) 13
Eco57I CTGAAG 2 cut(s) 216, 1002
Eco88I CYCGRG 3 cut(s) 8, 737, 752
EcoICRI GAGCTC 1 cut(s) 13
EcoT14I CCWWGG 3 cut(s) 132, 285, 797
EcoT38I GRGCYC 3 cut(s) 15, 252, 582
ErhI CCWWGG 3 cut(s) 132, 285, 797
Esp3I CGTCTC 1 cut(s) 61
FaeI CATG 7 cut(s) 289, 436, 667, 724, 801, 829, 958
FalI AAGNNNNNCTT 2 cut(s) 506, 538
FaqI GGGAC 5 cut(s) 11, 176, 380, 533, 995
FatI CATG 7 cut(s) 285, 432, 663, 720, 797, 825, 954
FauI CCCGC 3 cut(s) 28, 61, 267
FblI GTMKAC 1 cut(s) 806
Fnu4HI GCNGC 8 cut(s) 208, 470, 783, 905, 913, 927, 959, 1020
FokI GGATG 1 cut(s) 577
FriOI GRGCYC 3 cut(s) 15, 252, 582
Fsp4HI GCNGC 8 cut(s) 208, 470, 783, 905, 913, 927, 959, 1020
GluI GCNGC 8 cut(s) 208, 470, 783, 905, 913, 927, 959, 1020
GsaI CCCAGC 2 cut(s) 564, 585
HaeIII GGCC 5 cut(s) 92, 131, 290, 534, 719
HapII CCGG 6 cut(s) 93, 238, 263, 410, 503, 987
HgaI GACGC 3 cut(s) 574, 643, 719
Hin1I GRCGYC 3 cut(s) 189, 635, 730
Hin1II CATG 7 cut(s) 289, 436, 667, 724, 801, 829, 958
HincII GTYRAC 1 cut(s) 151
HindII GTYRAC 1 cut(s) 151
HindIII AAGCTT 1 cut(s) 314
HinfI GANTC 3 cut(s) 218, 510, 884
HpaII CCGG 6 cut(s) 93, 238, 263, 410, 503, 987
HphI GGTGA 1 cut(s) 725
Hpy166II GTNNAC 7 cut(s) 151, 256, 379, 703, 772, 807, 952
Hpy188I TCNGA 3 cut(s) 66, 630, 982
Hpy188III TCNNGA 7 cut(s) 8, 28, 215, 359, 589, 658, 754
Hpy8I GTNNAC 7 cut(s) 151, 256, 379, 703, 772, 807, 952
Hpy99I CGWCG 5 cut(s) 191, 547, 634, 637, 884
HpyAV CCTTC 3 cut(s) 139, 808, 1023
HpyCH4III ACNGT 4 cut(s) 279, 440, 779, 919
HpyCH4IV ACGT 6 cut(s) 70, 78, 108, 189, 297, 699
HpyCH4V TGCA 4 cut(s) 231, 772, 856, 958
HpyF10VI GCNNNNNNNGC 3 cut(s) 498, 935, 944
HpyF3I CTNAG 3 cut(s) 617, 939, 1023
HpySE526I ACGT 6 cut(s) 70, 78, 108, 189, 297, 699
Hsp92I GRCGYC 3 cut(s) 189, 635, 730
Hsp92II CATG 7 cut(s) 289, 436, 667, 724, 801, 829, 958
KroI GCCGGC 1 cut(s) 92
KroNI GCCGGC 1 cut(s) 94
Kzo9I GATC 4 cut(s) 480, 601, 690, 788
LmnI GCTCC 3 cut(s) 10, 459, 631
Lsp1109I GCAGC 2 cut(s) 924, 970
MaeII ACGT 6 cut(s) 70, 78, 108, 189, 297, 699
MaeIII GTNAC 2 cut(s) 79, 731
MalI GATC 4 cut(s) 482, 603, 692, 790
MboI GATC 4 cut(s) 480, 601, 690, 788
MboII GAAGA 5 cut(s) 53, 209, 463, 622, 830
MflI RGATCY 1 cut(s) 601
MhlI GDGCHC 5 cut(s) 15, 252, 503, 582, 774
MlsI TGGCCA 2 cut(s) 131, 719
MluCI AATT 1 cut(s) 706
MluNI TGGCCA 2 cut(s) 131, 719
MlyI GAGTC 3 cut(s) 227, 519, 893
MmeI TCCRAC 2 cut(s) 653, 870
MnlI CCTC 6 cut(s) 135, 795, 825, 829, 928, 964
Mox20I TGGCCA 2 cut(s) 131, 719
MroNI GCCGGC 1 cut(s) 92
MscI TGGCCA 2 cut(s) 131, 719
MseI TTAA 1 cut(s) 843
MslI CAYNNNNRTG 3 cut(s) 374, 777, 845
Msp20I TGGCCA 2 cut(s) 131, 719
MspI CCGG 6 cut(s) 93, 238, 263, 410, 503, 987
MspR9I CCNGG 2 cut(s) 239, 503
Mva1269I GAATGC 1 cut(s) 210
MwoI GCNNNNNNNGC 3 cut(s) 498, 935, 944
NaeI GCCGGC 1 cut(s) 94
NciI CCSGG 2 cut(s) 239, 503
NcoI CCATGG 2 cut(s) 285, 797
NdeII GATC 4 cut(s) 480, 601, 690, 788
NgoMIV GCCGGC 1 cut(s) 92
NlaIII CATG 7 cut(s) 289, 436, 667, 724, 801, 829, 958
NlaIV GGNNCC 2 cut(s) 6, 461
NmeAIII GCCGAG 1 cut(s) 670
NmuCI GTSAC 2 cut(s) 79, 731
NspI RCATGY 2 cut(s) 667, 958
NspV TTCGAA 1 cut(s) 525
OliI CACNNNNGTG 1 cut(s) 777
PaeR7I CTCGAG 1 cut(s) 752
PciI ACATGT 1 cut(s) 663
PcsI WCGNNNNNNNCGW 4 cut(s) 21, 105, 114, 582
PctI GAATGC 1 cut(s) 210
PdiI GCCGGC 1 cut(s) 94
PflMI CCANNNNNTGG 1 cut(s) 726
PfoI TCCNGGA 1 cut(s) 237
PkrI GCNGC 8 cut(s) 209, 471, 784, 906, 914, 928, 960, 1021
PleI GAGTC 3 cut(s) 226, 518, 892
PpsI GAGTC 3 cut(s) 226, 518, 892
Ppu21I YACGTR 1 cut(s) 109
PscI ACATGT 1 cut(s) 663
Psp124BI GAGCTC 1 cut(s) 15
Psp1406I AACGTT 1 cut(s) 699
PspFI CCCAGC 2 cut(s) 560, 581
PspN4I GGNNCC 2 cut(s) 6, 461
PspPI GGNCC 1 cut(s) 533
PsuI RGATCY 1 cut(s) 601
RsaI GTAC 5 cut(s) 161, 380, 476, 488, 714
RsaNI GTAC 5 cut(s) 160, 379, 475, 487, 713
RseI CAYNNNNRTG 3 cut(s) 374, 777, 845
SacI GAGCTC 1 cut(s) 15
SaqAI TTAA 1 cut(s) 843
SatI GCNGC 8 cut(s) 208, 470, 783, 905, 913, 927, 959, 1020
Sau3AI GATC 4 cut(s) 480, 601, 690, 788
Sau96I GGNCC 1 cut(s) 533
SchI GAGTC 3 cut(s) 227, 519, 893
ScrFI CCNGG 2 cut(s) 239, 503
SduI GDGCHC 5 cut(s) 15, 252, 503, 582, 774
Sfr274I CTCGAG 1 cut(s) 752
SfuI TTCGAA 1 cut(s) 525
SlaI CTCGAG 1 cut(s) 752
SmiMI CAYNNNNRTG 3 cut(s) 374, 777, 845
SmlI CTYRAG 3 cut(s) 139, 215, 752
SmoI CTYRAG 3 cut(s) 139, 215, 752
Sse9I AATT 1 cut(s) 706
SstI GAGCTC 1 cut(s) 15
StyD4I CCNGG 2 cut(s) 237, 501
StyI CCWWGG 3 cut(s) 132, 285, 797
TaaI ACNGT 4 cut(s) 279, 440, 779, 919
TaiI ACGT 6 cut(s) 73, 81, 111, 192, 300, 702
TaqI TCGA 4 cut(s) 246, 525, 576, 753
TasI AATT 1 cut(s) 706
TatI WGTACW 1 cut(s) 474
TauI GCSGC 6 cut(s) 210, 472, 785, 907, 929, 1022
Tru1I TTAA 1 cut(s) 843
Tru9I TTAA 1 cut(s) 843
TscAI CASTG 2 cut(s) 503, 922
TseFI GTSAC 2 cut(s) 79, 731
TseI GCWGC 2 cut(s) 912, 958
Tsp45I GTSAC 2 cut(s) 79, 731
TspDTI ATGAA 1 cut(s) 955
TspRI CASTG 2 cut(s) 503, 922
Van91I CCANNNNNTGG 1 cut(s) 726
VneI GTGCAC 1 cut(s) 770
XceI RCATGY 2 cut(s) 667, 958
XhoI CTCGAG 1 cut(s) 752
XmiI GTMKAC 1 cut(s) 806
ZraI GACGTC 1 cut(s) 190
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.