Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0016492

Physical Location & Seq

Genomic Coordinates Forward (+)

314507 .. 316652

Gene Structure 2146 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G005100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1050 bp

ATGGCTCCTGAACTCGTCCCCACCGGCGTCGCTAAGTCGGGTTTCACTATACCCGCCACCGTGCCGAGCCGGGCATACGTAACCTTTTTGGCCGGCAACGGCGACTACGTGAAAGGCGTCGTCGGATTGGCCAAGGGATTGAGGAAGGTCAAAACGGCCTACCCATTGGTCGTTGCGGTCTTGCCCGACGTCCCTCAAGAGCACCGTCGTATTCTGGAGTCGCAGGGTTGCATAGTCCGAGAGATCGAACCCGTTTGCCCGCCCGAGAACCAGACCCAGTTCGCCATGGCCTATTACGTAATCAACTATTCCAAACTCCGAATTTGGGAGTTTGTGGAGTATAGCAAGATGATATACTTGGACGGGGACATTCAGGTGTACGACAACATAGATCACCTGTTTGATCTGCCAGACGGCCACTTCTACGCAGTGATGGATTGCTTTTGCGAGAAAACATGGAGTCACACGCCGCAGTACAAGATCGGGTACTGCCAGCAGTGCCCGGAGAAGGTGCAGTGGCCCGCATCGGAGCTGGGCCCACCACCCTCACTTTACTTCAACGCCGGCATGTTTGTGTTCGAGCCCGACCTCGAAACCTACCATGACCTCTTGAACACTCTCAAAGTGACTCCGCCCACCCCATTTGCGGAGCAGGACTATCTGAACATGTTCTTCAGGAAAATCTACAAGCCAATTCCTTTGGCTTACAATTTGGTCCTCGCAATGTTGTGGCGACACCCGGAGAATGTGGAGCTTGACAAAGTGAAAGTGGTGCATTATTGTGCAGCAGGATCAAAGCCGTGGAGGTACACAGGGAAGGAGGAGAACATGGAGAGGGAGGACATAAAGATGTTGGTGAAGAAATGGTGGGACATATACAACGACAAGTCGTTGGATTACAAGAAACCATCGGCACCAGGAGCAAGAGCAGGAACAAGAGCAGCTGTTGTGGGCGGTGCTGAAGGTGAAGGGGTGAACATGCAGCCCTTCATTGAGGCTCTGTCGGAAGCTGGTGTGGTGCAATATGTGACTGCCCCATCAGCCGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0000302 GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005975 GO:0005976 GO:0005977 GO:0005978 GO:0005996 GO:0006012 GO:0006073 GO:0006091 GO:0006112 GO:0006950 GO:0006970 GO:0006979 GO:0008150 GO:0008152 GO:0008194 GO:0008378 GO:0008466 GO:0009058 GO:0009059 GO:0009250 GO:0009266 GO:0009314 GO:0009408 GO:0009409 GO:0009414 GO:0009415 GO:0009416 GO:0009628 GO:0009636 GO:0009642 GO:0009644 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0010035 GO:0015980 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0019318 GO:0033692 GO:0033993 GO:0034637 GO:0034645 GO:0035250 GO:0035251 GO:0042221 GO:0042493 GO:0042542 GO:0043170 GO:0044042 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046527 GO:0046677 GO:0047216 GO:0050896 GO:0055114 GO:0071704 GO:0097305 GO:1901576 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00052 map00052

Pfam Domains

Protein Families

Glyco_transf_8

Protein Analysis

350

Amino Acids

39.44

Weight (kDa)

5.73

Isoelectric Point (pI)

37.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016492)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47180
fragaria_vesca	FvH4_1g26560
malus_domestica	MD09G1288100.v1.1 MD17G1280400.v1.1
prunus_persica	Prupe.3G005100_v2.0.a1
pyrus_communis	pycom09g19550 pycom17g27830
rosa_chinensis	RchiOBHm_Chr3g0486641
rosa_laevigata	RLG00000023070
rosa_multiflora	Rmu_sc0000261.1_g000006
rosa_rugosa	Rorug03G0226200
rosa_samantha	Rh3AG275700 Rh3DG306800
rosa_wichuraiana	Rw3G024570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	192
AccB1I	GGYRCC	1 cut(s)	913
AciI	CCGC	9 cut(s)	54, 176, 260, 470, 522, 632, 647, 954, 1044
AclWI	GGATC	1 cut(s)	799
AcoI	YGGCCR	3 cut(s)	90, 129, 415
AcsI	RAATTY	1 cut(s)	321
AcuI	CTGAAG	2 cut(s)	658, 981
AcyI	GRCGYC	3 cut(s)	27, 117, 189
AfaI	GTAC	4 cut(s)	380, 476, 488, 809
AfiI	CCNNNNNNNGG	3 cut(s)	325, 508, 646
AflIII	ACRYGT	1 cut(s)	666
AgsI	TTSAA	2 cut(s)	559, 613
AjnI	CCWGG	1 cut(s)	916
AluBI	AGCT	4 cut(s)	532, 754, 944, 1010
AluI	AGCT	4 cut(s)	532, 754, 944, 1010
Alw21I	GWGCWC	1 cut(s)	204
AlwI	GGATC	1 cut(s)	799
Ama87I	CYCGRG	1 cut(s)	263
AoxI	GGCC	7 cut(s)	90, 129, 156, 288, 415, 518, 535
ApaI	GGGCCC	1 cut(s)	539
ApeKI	GCWGC	3 cut(s)	785, 941, 982
ApoI	RAATTY	1 cut(s)	321
Asp700I	GAANNNNTTC	1 cut(s)	668
AspS9I	GGNCC	4 cut(s)	519, 535, 536, 715
AsuC2I	CCSGG	3 cut(s)	71, 503, 740
AsuHPI	GGTGA	4 cut(s)	386, 868, 977, 985
AvaI	CYCGRG	1 cut(s)	263
AvaII	GGWCC	1 cut(s)	715
BaeGI	GKGCMC	2 cut(s)	503, 539
BalI	TGGCCA	1 cut(s)	131
BanI	GGYRCC	1 cut(s)	913
BanII	GRGCYC	2 cut(s)	539, 585
Bbv12I	GWGCWC	1 cut(s)	204
BbvI	GCAGC	3 cut(s)	797, 953, 994
BccI	CCATC	3 cut(s)	427, 916, 1045
BceAI	ACGGC	4 cut(s)	115, 171, 430, 784
BciT130I	CCWGG	1 cut(s)	918
BcnI	CCSGG	3 cut(s)	71, 503, 740
BisI	GCNGC	5 cut(s)	470, 786, 942, 983, 1044
BlsI	GCNGC	5 cut(s)	471, 787, 943, 984, 1045
Bme1390I	CCNGG	4 cut(s)	71, 503, 740, 918
Bme18I	GGWCC	1 cut(s)	715
BmeT110I	CYCGRG	1 cut(s)	263
BmgT120I	GGNCC	4 cut(s)	519, 535, 536, 715
BmiI	GGNNCC	3 cut(s)	6, 537, 915
BmrFI	CCNGG	4 cut(s)	71, 503, 740, 918
BmrI	ACTGGG	1 cut(s)	271
BmsI	GCATC	1 cut(s)	533
BmuI	ACTGGG	1 cut(s)	271
BpmI	CTGGAG	1 cut(s)	236
BpuEI	CTTGAG	1 cut(s)	180
BpuMI	CCSGG	3 cut(s)	71, 503, 740
BsaAI	YACGTR	3 cut(s)	79, 109, 298
BsaHI	GRCGYC	3 cut(s)	27, 117, 189
BsaJI	CCNNGG	3 cut(s)	132, 285, 800
Bsc4I	CCNNNNNNNGG	3 cut(s)	325, 508, 646
Bse118I	RCCGGY	3 cut(s)	23, 92, 563
Bse1I	ACTGG	1 cut(s)	277
Bse3DI	GCAATG	1 cut(s)	729
BseBI	CCWGG	1 cut(s)	918
BseDI	CCNNGG	3 cut(s)	132, 285, 800
BseLI	CCNNNNNNNGG	3 cut(s)	325, 508, 646
BseMI	GCAATG	1 cut(s)	729
BseNI	ACTGG	1 cut(s)	277
BseRI	GAGGAG	1 cut(s)	836
BseSI	GKGCMC	2 cut(s)	503, 539
BseXI	GCAGC	3 cut(s)	797, 953, 994
BseYI	CCCAGC	1 cut(s)	532
BsgI	GTGCAG	2 cut(s)	533, 804
BshFI	GGCC	7 cut(s)	92, 131, 158, 290, 417, 520, 537
BshNI	GGYRCC	1 cut(s)	913
BsiHKAI	GWGCWC	1 cut(s)	204
BsiHKCI	CYCGRG	1 cut(s)	263
BsiSI	CCGG	6 cut(s)	24, 70, 93, 503, 564, 740
BslFI	GGGAC	4 cut(s)	2, 176, 380, 884
BslI	CCNNNNNNNGG	3 cut(s)	325, 508, 646
BsmFI	GGGAC	4 cut(s)	2, 176, 380, 884
BsnI	GGCC	7 cut(s)	92, 131, 158, 290, 417, 520, 537
BsoBI	CYCGRG	1 cut(s)	263
Bsp120I	GGGCCC	1 cut(s)	535
Bsp1286I	GDGCHC	4 cut(s)	204, 503, 539, 585
Bsp143I	GATC	5 cut(s)	243, 391, 403, 480, 791
Bsp19I	CCATGG	1 cut(s)	285
BspACI	CCGC	9 cut(s)	54, 176, 260, 470, 522, 632, 647, 954, 1044
BspANI	GGCC	7 cut(s)	92, 131, 158, 290, 417, 520, 537
BspLI	GGNNCC	3 cut(s)	6, 537, 915
BspPI	GGATC	1 cut(s)	799
BspT107I	GGYRCC	1 cut(s)	913
BsrDI	GCAATG	1 cut(s)	729
BsrFI	RCCGGY	3 cut(s)	23, 92, 563
BsrI	ACTGG	1 cut(s)	277
BssAI	RCCGGY	3 cut(s)	23, 92, 563
BssECI	CCNNGG	3 cut(s)	132, 285, 800
BssMI	GATC	5 cut(s)	243, 391, 403, 480, 791
BssNI	GRCGYC	3 cut(s)	27, 117, 189
BssT1I	CCWWGG	2 cut(s)	132, 285
Bst2UI	CCWGG	1 cut(s)	918
Bst4CI	ACNGT	2 cut(s)	61, 206
BstACI	GRCGYC	3 cut(s)	27, 117, 189
BstBAI	YACGTR	3 cut(s)	79, 109, 298
BstC8I	GCNNGC	5 cut(s)	94, 260, 494, 522, 565
BstDEI	CTNAG	1 cut(s)	33
BstDSI	CCRYGG	2 cut(s)	285, 800
BstKTI	GATC	5 cut(s)	246, 394, 406, 483, 794
BstMBI	GATC	5 cut(s)	243, 391, 403, 480, 791
BstMWI	GCNNNNNNNGC	3 cut(s)	498, 920, 1040
BstNI	CCWGG	1 cut(s)	918
BstNSI	RCATGY	3 cut(s)	571, 670, 982
BstSCI	CCNGG	4 cut(s)	69, 501, 738, 916
BstSLI	GKGCMC	2 cut(s)	503, 539
BstSNI	TACGTA	2 cut(s)	79, 298
BstV1I	GCAGC	3 cut(s)	797, 953, 994
BsuRI	GGCC	7 cut(s)	92, 131, 158, 290, 417, 520, 537
BtgI	CCRYGG	2 cut(s)	285, 800
BtsI	GCAGTG	3 cut(s)	435, 503, 521
BtsIMutI	CAGTG	3 cut(s)	435, 503, 521
Cac8I	GCNNGC	5 cut(s)	94, 260, 494, 522, 565
Cfr10I	RCCGGY	3 cut(s)	23, 92, 563
Cfr13I	GGNCC	4 cut(s)	519, 535, 536, 715
CseI	GACGC	2 cut(s)	16, 106
Csp6I	GTAC	4 cut(s)	379, 475, 487, 808
CspCI	CAANNNNNGTGG	2 cut(s)	625, 660
CviAII	CATG	7 cut(s)	286, 456, 568, 602, 667, 829, 979
CviQI	GTAC	4 cut(s)	379, 475, 487, 808
DdeI	CTNAG	1 cut(s)	33
DpnI	GATC	5 cut(s)	245, 393, 405, 482, 793
DpnII	GATC	5 cut(s)	243, 391, 403, 480, 791
EaeI	YGGCCR	3 cut(s)	90, 129, 415
EciI	GGCGGA	1 cut(s)	621
Eco105I	TACGTA	2 cut(s)	79, 298
Eco130I	CCWWGG	2 cut(s)	132, 285
Eco24I	GRGCYC	2 cut(s)	539, 585
Eco47I	GGWCC	1 cut(s)	715
Eco57I	CTGAAG	2 cut(s)	658, 981
Eco88I	CYCGRG	1 cut(s)	263
EcoRII	CCWGG	1 cut(s)	916
EcoT14I	CCWWGG	2 cut(s)	132, 285
EcoT38I	GRGCYC	2 cut(s)	539, 585
ErhI	CCWWGG	2 cut(s)	132, 285
FaeI	CATG	7 cut(s)	289, 459, 571, 605, 670, 832, 982
FaqI	GGGAC	4 cut(s)	2, 176, 380, 884
FatI	CATG	7 cut(s)	285, 455, 567, 601, 666, 828, 978
FauI	CCCGC	3 cut(s)	61, 267, 529
Fnu4HI	GCNGC	5 cut(s)	470, 786, 942, 983, 1044
FriOI	GRGCYC	2 cut(s)	539, 585
Fsp4HI	GCNGC	5 cut(s)	470, 786, 942, 983, 1044
GluI	GCNGC	5 cut(s)	470, 786, 942, 983, 1044
GsaI	CCCAGC	1 cut(s)	536
GsuI	CTGGAG	1 cut(s)	236
HaeIII	GGCC	7 cut(s)	92, 131, 158, 290, 417, 520, 537
HapII	CCGG	6 cut(s)	24, 70, 93, 503, 564, 740
HgaI	GACGC	2 cut(s)	16, 106
Hin1I	GRCGYC	3 cut(s)	27, 117, 189
Hin1II	CATG	7 cut(s)	289, 459, 571, 605, 670, 832, 982
HinfI	GANTC	3 cut(s)	218, 460, 628
HpaII	CCGG	6 cut(s)	24, 70, 93, 503, 564, 740
HphI	GGTGA	4 cut(s)	386, 868, 977, 985
Hpy166II	GTNNAC	3 cut(s)	379, 810, 976
Hpy188I	TCNGA	6 cut(s)	125, 239, 320, 529, 663, 1006
Hpy188III	TCNNGA	5 cut(s)	8, 197, 215, 610, 676
Hpy8I	GTNNAC	3 cut(s)	379, 810, 976
Hpy99I	CGWCG	5 cut(s)	32, 122, 125, 191, 210
HpyAV	CCTTC	6 cut(s)	139, 502, 811, 956, 962, 997
HpyCH4III	ACNGT	2 cut(s)	61, 206
HpyCH4IV	ACGT	4 cut(s)	78, 108, 189, 297
HpyCH4V	TGCA	6 cut(s)	231, 514, 775, 785, 982, 1021
HpyF10VI	GCNNNNNNNGC	3 cut(s)	498, 920, 1040
HpyF3I	CTNAG	1 cut(s)	33
HpySE526I	ACGT	4 cut(s)	78, 108, 189, 297
Hsp92I	GRCGYC	3 cut(s)	27, 117, 189
Hsp92II	CATG	7 cut(s)	289, 459, 571, 605, 670, 832, 982
KroI	GCCGGC	2 cut(s)	92, 563
KroNI	GCCGGC	2 cut(s)	94, 565
Kzo9I	GATC	5 cut(s)	243, 391, 403, 480, 791
LmnI	GCTCC	5 cut(s)	10, 529, 649, 751, 920
Lsp1109I	GCAGC	3 cut(s)	797, 953, 994
LweI	GCATC	1 cut(s)	533
MaeII	ACGT	4 cut(s)	78, 108, 189, 297
MaeIII	GTNAC	4 cut(s)	79, 461, 625, 1027
MalI	GATC	5 cut(s)	245, 393, 405, 482, 793
MboI	GATC	5 cut(s)	243, 391, 403, 480, 791
MboII	GAAGA	2 cut(s)	664, 871
MhlI	GDGCHC	4 cut(s)	204, 503, 539, 585
MlsI	TGGCCA	1 cut(s)	131
MluCI	AATT	3 cut(s)	321, 693, 709
MluNI	TGGCCA	1 cut(s)	131
MlyI	GAGTC	3 cut(s)	227, 469, 622
MmeI	TCCRAC	3 cut(s)	103, 873, 984
Mox20I	TGGCCA	1 cut(s)	131
MroNI	GCCGGC	2 cut(s)	92, 563
MroXI	GAANNNNTTC	1 cut(s)	668
MscI	TGGCCA	1 cut(s)	131
MseI	TTAA	1 cut(s)	1048
MslI	CAYNNNNRTG	4 cut(s)	374, 572, 780, 848
Msp20I	TGGCCA	1 cut(s)	131
MspA1I	CMGCKG	1 cut(s)	944
MspI	CCGG	6 cut(s)	24, 70, 93, 503, 564, 740
MspR9I	CCNGG	4 cut(s)	71, 503, 740, 918
MvaI	CCWGG	1 cut(s)	918
MwoI	GCNNNNNNNGC	3 cut(s)	498, 920, 1040
NaeI	GCCGGC	2 cut(s)	94, 565
NciI	CCSGG	3 cut(s)	71, 503, 740
NcoI	CCATGG	1 cut(s)	285
NdeII	GATC	5 cut(s)	243, 391, 403, 480, 791
NgoMIV	GCCGGC	2 cut(s)	92, 563
NlaIII	CATG	7 cut(s)	289, 459, 571, 605, 670, 832, 982
NlaIV	GGNNCC	3 cut(s)	6, 537, 915
NmeAIII	GCCGAG	1 cut(s)	90
NmuCI	GTSAC	3 cut(s)	461, 625, 1027
NspI	RCATGY	3 cut(s)	571, 670, 982
PciI	ACATGT	1 cut(s)	666
PcsI	WCGNNNNNNNCGW	2 cut(s)	105, 114
PdiI	GCCGGC	2 cut(s)	94, 565
PdmI	GAANNNNTTC	1 cut(s)	668
PkrI	GCNGC	5 cut(s)	471, 787, 943, 984, 1045
PleI	GAGTC	3 cut(s)	226, 468, 622
PpsI	GAGTC	3 cut(s)	226, 468, 622
Ppu21I	YACGTR	3 cut(s)	79, 109, 298
PscI	ACATGT	1 cut(s)	666
Psp6I	CCWGG	1 cut(s)	916
PspFI	CCCAGC	1 cut(s)	532
PspGI	CCWGG	1 cut(s)	916
PspN4I	GGNNCC	3 cut(s)	6, 537, 915
PspOMI	GGGCCC	1 cut(s)	535
PspPI	GGNCC	4 cut(s)	519, 535, 536, 715
PvuII	CAGCTG	1 cut(s)	944
RsaI	GTAC	4 cut(s)	380, 476, 488, 809
RsaNI	GTAC	4 cut(s)	379, 475, 487, 808
RseI	CAYNNNNRTG	4 cut(s)	374, 572, 780, 848
SaqAI	TTAA	1 cut(s)	1048
SatI	GCNGC	5 cut(s)	470, 786, 942, 983, 1044
Sau3AI	GATC	5 cut(s)	243, 391, 403, 480, 791
Sau96I	GGNCC	4 cut(s)	519, 535, 536, 715
SchI	GAGTC	3 cut(s)	227, 469, 622
ScrFI	CCNGG	4 cut(s)	71, 503, 740, 918
SduI	GDGCHC	4 cut(s)	204, 503, 539, 585
SfaNI	GCATC	1 cut(s)	533
SgrAI	CRCCGGYG	1 cut(s)	23
SinI	GGWCC	1 cut(s)	715
SmiMI	CAYNNNNRTG	4 cut(s)	374, 572, 780, 848
SmlI	CTYRAG	1 cut(s)	195
SmoI	CTYRAG	1 cut(s)	195
SnaBI	TACGTA	2 cut(s)	79, 298
Sse9I	AATT	3 cut(s)	321, 693, 709
SsiI	CCGC	9 cut(s)	54, 176, 260, 470, 522, 632, 647, 954, 1044
StyD4I	CCNGG	4 cut(s)	69, 501, 738, 916
StyI	CCWWGG	2 cut(s)	132, 285
TaaI	ACNGT	2 cut(s)	61, 206
TaiI	ACGT	4 cut(s)	81, 111, 192, 300
TaqI	TCGA	3 cut(s)	246, 579, 591
TasI	AATT	3 cut(s)	321, 693, 709
TatI	WGTACW	1 cut(s)	474
TauI	GCSGC	2 cut(s)	472, 1046
Tru1I	TTAA	1 cut(s)	1048
Tru9I	TTAA	1 cut(s)	1048
TscAI	CASTG	3 cut(s)	435, 503, 521
TseFI	GTSAC	3 cut(s)	461, 625, 1027
TseI	GCWGC	3 cut(s)	785, 941, 982
Tsp45I	GTSAC	3 cut(s)	461, 625, 1027
TspDTI	ATGAA	1 cut(s)	979
TspRI	CASTG	3 cut(s)	435, 503, 521
VpaK11BI	GGWCC	1 cut(s)	715
XapI	RAATTY	1 cut(s)	321
XceI	RCATGY	3 cut(s)	571, 670, 982
XmnI	GAANNNNTTC	1 cut(s)	668
ZraI	GACGTC	1 cut(s)	190

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.