Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007947

Physical Location & Seq

Genomic Coordinates Forward (+)

19457374 .. 19458924

Gene Structure 1551 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G47420.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1062 bp

ATGGCGGGAGGCAAGATCAGGAAGGAGAAGCCCAAGGCTTCGAATAGAGCACCATCGAACCATTACCAAGGAGGAATATCGTTCCACAAATCGAAAGGGCAACATATCCTTAAGAACCCTCTGCTTGTGGATTCGATCGTTCAGAAAGCTGGTATCAAGAGTACCGATGTGATTCTCGAGATCGGTCCCGGTACTGGAAACTTGACCAAGAAGCTTCTAGAAGCTGGCAAAGAAGTTATCGCCGTCGAACTTGACTCTCGTATGGTTCTCGAGCTTCAGCGCCGTTTTCAAGGAACTCCCTTCTCTAACCGCTTGAAGGTAATTCAAGGGGATGTGCTCAAGACGGAGCTTCCCAGGTTTGACATATGTGTGGCAAACATTCCGTATCAGATATCATCTCCTCTCACATTCAAACTTCTCTTCCATCCAACAAGCTTCAGATGTGCTGTCATCATGTACCAGAGGGAATTCGCCATGAGACTCGTTGCCCAGCCTGGTGACAATCTCTACTGCCGTCTCTCTGTCAACACTCAGCTTTATGCCAGAGTCTCCCACCTCCTCAAAGTCGGCAAGAACAATTTCCGCCCTCCTCCAAAGGTGGATTCTTCCGTTGTCAGGATCGAACCAAGGAGGCCTGGCCCTCAGGTTAACAAGAAGGAGTGGGATGGGTTCTTAAGAGTCTGTTTCATCAGAAAGAACAAAACCTTGGGATCCATTTTCAAGCAAAAGTCTGTTCTTTCCATGCTGGAGAAGAACTTCAAGACTCTTCAGGCCGTACTAGCTTCGTTGCAGAACAATGGAGAACCTGCTTTGAACACCACCTCCATGGATCTTGGTGACCAGAGCATGGGAATGGAAGATGACGACAACGAAATGGATGACGATGATATGGAGATGGATGAGGGAGAAGGAGACGGAGGAGAAACATCAGAGTTCAAGGAGAAAGTTATGAATGTCTTGAAGGAAGGTGGTTTCGAGGAGAAGAGATCTTCAAAGCTATCACAACAAGAGTTTTTGTATCTTCTTTCCTTGTTCAACAAGTCTGGTATTCACTTCACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000154 GO:0000179 GO:0001510 GO:0001708 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005739 GO:0005759 GO:0005829 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008173 GO:0008649 GO:0008757 GO:0009451 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010604 GO:0010628 GO:0016070 GO:0016072 GO:0016433 GO:0016740 GO:0016741 GO:0019219 GO:0019222 GO:0022613 GO:0030154 GO:0031167 GO:0031323 GO:0031325 GO:0031974 GO:0031981 GO:0032259 GO:0032502 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043414 GO:0044085 GO:0044087 GO:0044089 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0045165 GO:0045935 GO:0046483 GO:0048518 GO:0048522 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051301 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0090069 GO:0090070 GO:0090304 GO:0140098 GO:0140102 GO:1901360 GO:2000232 GO:2000234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RrnaAD

Protein Analysis

353

Amino Acids

39.69

Weight (kDa)

9.14

Isoelectric Point (pI)

36.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RrnaAD	PF00398	27 - 255	7.1e-65	Ribosomal RNA adenine dimethylase
Methyltransf_25	PF13649	58 - 126	1.1e-08	Methyltransferase domain
Methyltransf_12	PF08242	59 - 126	7.8e-07	Methyltransferase domain
Methyltransf_11	PF08241	59 - 126	9.6e-07	Methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007947)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47420
fragaria_vesca	FvH4_5g39320 FvH4_5g39320 FvH4_5g39320 FvH4_5g39320 FvH4_5g39320
malus_domestica	MD01G1012800.v1.1 MD11G1314900.v1.1
prunus_persica	Prupe.1G563800_v2.0.a1 Prupe.8G271700_v2.0.a1
pyrus_communis	pycom01g04480 pycom03g23390 pycom11g27510
rosa_chinensis	RchiOBHm_Chr7g0241601
rosa_laevigata	RLG00000000562
rosa_multiflora	Rmu_sc0002268.1_g000014 Rmu_sc0014556.1_g000002
rosa_roxburghii	Rroxscaffold_3G00218890
rosa_rugosa	Rorug07G0345600
rosa_samantha	Rh7AG500000 Rh7BG471100 Rh7CG516400 Rh7DG485000
rosa_wichuraiana	Rw7G042230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	814
AccB7I	CCANNNNNTGG	1 cut(s)	847
AciI	CCGC	3 cut(s)	5, 310, 583
AclWI	GGATC	4 cut(s)	626, 705, 718, 837
AcsI	RAATTY	1 cut(s)	467
AcuI	CTGAAG	3 cut(s)	260, 421, 752
AfaI	GTAC	4 cut(s)	163, 193, 458, 777
AfiI	CCNNNNNNNGG	4 cut(s)	194, 316, 615, 847
AflII	CTTAAG	2 cut(s)	110, 673
AjnI	CCWGG	3 cut(s)	353, 493, 634
AjuI	GAANNNNNNNTTGG	4 cut(s)	586, 618, 689, 721
AloI	GAACNNNNNNTCC	2 cut(s)	806, 838
AluBI	AGCT	9 cut(s)	149, 214, 224, 274, 349, 435, 535, 782, 997
AluI	AGCT	9 cut(s)	149, 214, 224, 274, 349, 435, 535, 782, 997
Alw21I	GWGCWC	2 cut(s)	52, 339
Alw26I	GTCTC	4 cut(s)	472, 521, 553, 906
AlwI	GGATC	4 cut(s)	626, 705, 718, 837
Ama87I	CYCGRG	2 cut(s)	176, 269
AoxI	GGCC	3 cut(s)	632, 637, 771
ApoI	RAATTY	1 cut(s)	467
Asp700I	GAANNNNTTC	2 cut(s)	578, 755
AspLEI	GCGC	1 cut(s)	282
AspS9I	GGNCC	2 cut(s)	185, 638
AsuC2I	CCSGG	1 cut(s)	189
AsuHPI	GGTGA	2 cut(s)	509, 848
AsuII	TTCGAA	1 cut(s)	41
AvaI	CYCGRG	2 cut(s)	176, 269
AvaII	GGWCC	1 cut(s)	185
AxyI	CCTNAGG	1 cut(s)	642
BamHI	GGATCC	1 cut(s)	710
Bbv12I	GWGCWC	2 cut(s)	52, 339
BccI	CCATC	4 cut(s)	61, 432, 659, 889
BceAI	ACGGC	4 cut(s)	227, 267, 498, 758
BciT130I	CCWGG	3 cut(s)	355, 495, 636
BcnI	CCSGG	1 cut(s)	189
BcoDI	GTCTC	4 cut(s)	472, 521, 553, 906
BfaI	CTAG	2 cut(s)	218, 779
BfoI	RGCGCY	1 cut(s)	283
BfrI	CTTAAG	2 cut(s)	110, 673
BfuAI	ACCTGC	1 cut(s)	814
BglII	AGATCT	1 cut(s)	986
Bme1390I	CCNGG	4 cut(s)	189, 355, 495, 636
Bme18I	GGWCC	1 cut(s)	185
BmeT110I	CYCGRG	2 cut(s)	176, 269
BmgT120I	GGNCC	2 cut(s)	185, 638
BmiI	GGNNCC	2 cut(s)	187, 712
BmrFI	CCNGG	4 cut(s)	189, 355, 495, 636
BpmI	CTGGAG	1 cut(s)	767
Bpu14I	TTCGAA	1 cut(s)	41
BpuEI	CTTGAG	1 cut(s)	323
BpuMI	CCSGG	1 cut(s)	189
BsaJI	CCNNGG	6 cut(s)	33, 67, 353, 626, 705, 825
BsaXI	ACNNNNNCTCC	2 cut(s)	806, 836
Bsc4I	CCNNNNNNNGG	4 cut(s)	194, 316, 615, 847
Bse1I	ACTGG	1 cut(s)	199
Bse21I	CCTNAGG	1 cut(s)	642
BseBI	CCWGG	3 cut(s)	355, 495, 636
BseDI	CCNNGG	6 cut(s)	33, 67, 353, 626, 705, 825
BseGI	GGATG	5 cut(s)	337, 424, 670, 883, 904
BseLI	CCNNNNNNNGG	4 cut(s)	194, 316, 615, 847
BseMII	CTCAG	2 cut(s)	545, 656
BseNI	ACTGG	1 cut(s)	199
BseRI	GAGGAG	5 cut(s)	390, 548, 579, 933, 992
BseYI	CCCAGC	1 cut(s)	489
Bsh1285I	CGRYCG	1 cut(s)	138
BshFI	GGCC	3 cut(s)	634, 639, 773
BsiEI	CGRYCG	1 cut(s)	138
BsiHKAI	GWGCWC	2 cut(s)	52, 339
BsiHKCI	CYCGRG	2 cut(s)	176, 269
BsiSI	CCGG	1 cut(s)	189
BslFI	GGGAC	1 cut(s)	171
BslI	CCNNNNNNNGG	4 cut(s)	194, 316, 615, 847
BsmAI	GTCTC	4 cut(s)	472, 521, 553, 906
BsmBI	CGTCTC	2 cut(s)	521, 906
BsmFI	GGGAC	1 cut(s)	171
BsnI	GGCC	3 cut(s)	634, 639, 773
BsoBI	CYCGRG	2 cut(s)	176, 269
Bsp119I	TTCGAA	1 cut(s)	41
Bsp1286I	GDGCHC	2 cut(s)	52, 339
Bsp143I	GATC	7 cut(s)	15, 135, 180, 618, 710, 829, 986
Bsp19I	CCATGG	1 cut(s)	825
BspACI	CCGC	3 cut(s)	5, 310, 583
BspANI	GGCC	3 cut(s)	634, 639, 773
BspCNI	CTCAG	2 cut(s)	544, 655
BspLI	GGNNCC	2 cut(s)	187, 712
BspMI	ACCTGC	1 cut(s)	814
BspPI	GGATC	4 cut(s)	626, 705, 718, 837
BspT104I	TTCGAA	1 cut(s)	41
BspTI	CTTAAG	2 cut(s)	110, 673
BsrI	ACTGG	1 cut(s)	199
BssECI	CCNNGG	6 cut(s)	33, 67, 353, 626, 705, 825
BssMI	GATC	7 cut(s)	15, 135, 180, 618, 710, 829, 986
BssT1I	CCWWGG	5 cut(s)	33, 67, 626, 705, 825
Bst2UI	CCWGG	3 cut(s)	355, 495, 636
Bst6I	CTCTTC	3 cut(s)	425, 771, 977
BstAFI	CTTAAG	2 cut(s)	110, 673
BstBI	TTCGAA	1 cut(s)	41
BstC8I	GCNNGC	1 cut(s)	226
BstDEI	CTNAG	2 cut(s)	531, 642
BstDSI	CCRYGG	1 cut(s)	825
BstEII	GGTNACC	1 cut(s)	836
BstF5I	GGATG	5 cut(s)	337, 424, 670, 883, 904
BstH2I	RGCGCY	1 cut(s)	283
BstHHI	GCGC	1 cut(s)	282
BstKTI	GATC	7 cut(s)	18, 138, 183, 621, 713, 832, 989
BstMAI	GTCTC	4 cut(s)	472, 521, 553, 906
BstMBI	GATC	7 cut(s)	15, 135, 180, 618, 710, 829, 986
BstMCI	CGRYCG	1 cut(s)	138
BstMWI	GCNNNNNNNGC	1 cut(s)	779
BstNI	CCWGG	3 cut(s)	355, 495, 636
BstPI	GGTNACC	1 cut(s)	836
BstSCI	CCNGG	4 cut(s)	187, 353, 493, 634
BstX2I	RGATCY	3 cut(s)	710, 829, 986
BstXI	CCANNNNNNTGG	1 cut(s)	826
BstYI	RGATCY	3 cut(s)	710, 829, 986
Bsu36I	CCTNAGG	1 cut(s)	642
BsuRI	GGCC	3 cut(s)	634, 639, 773
BtgI	CCRYGG	1 cut(s)	825
BtsCI	GGATG	5 cut(s)	337, 424, 670, 883, 904
BveI	ACCTGC	1 cut(s)	814
Cac8I	GCNNGC	1 cut(s)	226
CfoI	GCGC	1 cut(s)	282
Cfr13I	GGNCC	2 cut(s)	185, 638
Csp6I	GTAC	4 cut(s)	162, 192, 457, 776
CviAII	CATG	5 cut(s)	454, 475, 742, 826, 847
CviQI	GTAC	4 cut(s)	162, 192, 457, 776
DdeI	CTNAG	2 cut(s)	531, 642
DpnI	GATC	7 cut(s)	17, 137, 182, 620, 712, 831, 988
DpnII	GATC	7 cut(s)	15, 135, 180, 618, 710, 829, 986
Eam1104I	CTCTTC	3 cut(s)	425, 771, 977
EarI	CTCTTC	3 cut(s)	425, 771, 977
EciI	GGCGGA	1 cut(s)	572
Eco130I	CCWWGG	5 cut(s)	33, 67, 626, 705, 825
Eco147I	AGGCCT	1 cut(s)	634
Eco32I	GATATC	1 cut(s)	393
Eco47I	GGWCC	1 cut(s)	185
Eco57I	CTGAAG	3 cut(s)	260, 421, 752
Eco81I	CCTNAGG	1 cut(s)	642
Eco88I	CYCGRG	2 cut(s)	176, 269
Eco91I	GGTNACC	1 cut(s)	836
EcoO65I	GGTNACC	1 cut(s)	836
EcoRI	GAATTC	1 cut(s)	467
EcoRII	CCWGG	3 cut(s)	353, 493, 634
EcoRV	GATATC	1 cut(s)	393
EcoT14I	CCWWGG	5 cut(s)	33, 67, 626, 705, 825
ErhI	CCWWGG	5 cut(s)	33, 67, 626, 705, 825
Esp3I	CGTCTC	2 cut(s)	521, 906
FaeI	CATG	5 cut(s)	457, 478, 745, 829, 850
FaqI	GGGAC	1 cut(s)	171
FatI	CATG	5 cut(s)	453, 474, 741, 825, 846
FauNDI	CATATG	1 cut(s)	365
FokI	GGATG	5 cut(s)	344, 411, 677, 890, 911
FspBI	CTAG	2 cut(s)	218, 779
GlaI	GCGC	1 cut(s)	281
GsaI	CCCAGC	1 cut(s)	493
GsuI	CTGGAG	1 cut(s)	767
HaeII	RGCGCY	1 cut(s)	283
HaeIII	GGCC	3 cut(s)	634, 639, 773
HapII	CCGG	1 cut(s)	189
HhaI	GCGC	1 cut(s)	282
Hin1II	CATG	5 cut(s)	457, 478, 745, 829, 850
Hin6I	GCGC	1 cut(s)	280
HinP1I	GCGC	1 cut(s)	280
HincII	GTYRAC	2 cut(s)	526, 649
HindII	GTYRAC	2 cut(s)	526, 649
HindIII	AAGCTT	2 cut(s)	212, 433
HinfI	GANTC	8 cut(s)	131, 172, 254, 480, 546, 602, 678, 763
HpaI	GTTAAC	1 cut(s)	649
HpaII	CCGG	1 cut(s)	189
HphI	GGTGA	2 cut(s)	509, 848
Hpy166II	GTNNAC	2 cut(s)	526, 649
Hpy188I	TCNGA	5 cut(s)	144, 390, 440, 692, 931
Hpy8I	GTNNAC	2 cut(s)	526, 649
Hpy99I	CGWCG	1 cut(s)	248
HpyAV	CCTTC	7 cut(s)	16, 310, 310, 649, 902, 955, 959
HpyCH4V	TGCA	1 cut(s)	790
HpyF10VI	GCNNNNNNNGC	1 cut(s)	779
HpyF3I	CTNAG	2 cut(s)	531, 642
Hsp92II	CATG	5 cut(s)	457, 478, 745, 829, 850
HspAI	GCGC	1 cut(s)	280
KspAI	GTTAAC	1 cut(s)	649
Kzo9I	GATC	7 cut(s)	15, 135, 180, 618, 710, 829, 986
LmnI	GCTCC	1 cut(s)	346
MaeI	CTAG	2 cut(s)	218, 779
MaeIII	GTNAC	2 cut(s)	497, 836
MalI	GATC	7 cut(s)	17, 137, 182, 620, 712, 831, 988
MboI	GATC	7 cut(s)	15, 135, 180, 618, 710, 829, 986
MboII	GAAGA	8 cut(s)	412, 597, 758, 763, 869, 981, 994, 1013
MflI	RGATCY	3 cut(s)	710, 829, 986
MhlI	GDGCHC	2 cut(s)	52, 339
MluCI	AATT	3 cut(s)	321, 467, 577
MlyI	GAGTC	5 cut(s)	248, 474, 555, 687, 757
MmeI	TCCRAC	1 cut(s)	452
MroXI	GAANNNNTTC	2 cut(s)	578, 755
MseI	TTAA	3 cut(s)	111, 648, 674
MslI	CAYNNNNRTG	3 cut(s)	368, 824, 851
MspCI	CTTAAG	2 cut(s)	110, 673
MspI	CCGG	1 cut(s)	189
MspR9I	CCNGG	4 cut(s)	189, 355, 495, 636
MvaI	CCWGG	3 cut(s)	355, 495, 636
MwoI	GCNNNNNNNGC	1 cut(s)	779
NciI	CCSGG	1 cut(s)	189
NcoI	CCATGG	1 cut(s)	825
NdeI	CATATG	1 cut(s)	365
NdeII	GATC	7 cut(s)	15, 135, 180, 618, 710, 829, 986
NlaIII	CATG	5 cut(s)	457, 478, 745, 829, 850
NlaIV	GGNNCC	2 cut(s)	187, 712
NmuCI	GTSAC	2 cut(s)	497, 836
NspV	TTCGAA	1 cut(s)	41
PaeR7I	CTCGAG	2 cut(s)	176, 269
PceI	AGGCCT	1 cut(s)	634
PdmI	GAANNNNTTC	2 cut(s)	578, 755
PfeI	GAWTC	3 cut(s)	131, 172, 602
PflMI	CCANNNNNTGG	1 cut(s)	847
Ple19I	CGATCG	1 cut(s)	138
PleI	GAGTC	5 cut(s)	248, 474, 554, 686, 757
PpsI	GAGTC	5 cut(s)	248, 474, 554, 686, 757
Psp6I	CCWGG	3 cut(s)	353, 493, 634
PspEI	GGTNACC	1 cut(s)	836
PspFI	CCCAGC	1 cut(s)	489
PspGI	CCWGG	3 cut(s)	353, 493, 634
PspN4I	GGNNCC	2 cut(s)	187, 712
PspPI	GGNCC	2 cut(s)	185, 638
PsuI	RGATCY	3 cut(s)	710, 829, 986
PvuI	CGATCG	1 cut(s)	138
RsaI	GTAC	4 cut(s)	163, 193, 458, 777
RsaNI	GTAC	4 cut(s)	162, 192, 457, 776
RseI	CAYNNNNRTG	3 cut(s)	368, 824, 851
SaqAI	TTAA	3 cut(s)	111, 648, 674
Sau3AI	GATC	7 cut(s)	15, 135, 180, 618, 710, 829, 986
Sau96I	GGNCC	2 cut(s)	185, 638
SchI	GAGTC	5 cut(s)	248, 474, 555, 687, 757
ScrFI	CCNGG	4 cut(s)	189, 355, 495, 636
SduI	GDGCHC	2 cut(s)	52, 339
Sfr274I	CTCGAG	2 cut(s)	176, 269
SfuI	TTCGAA	1 cut(s)	41
SinI	GGWCC	1 cut(s)	185
SlaI	CTCGAG	2 cut(s)	176, 269
SmiMI	CAYNNNNRTG	3 cut(s)	368, 824, 851
SmlI	CTYRAG	5 cut(s)	110, 176, 269, 338, 673
SmoI	CTYRAG	5 cut(s)	110, 176, 269, 338, 673
Sse9I	AATT	3 cut(s)	321, 467, 577
SseBI	AGGCCT	1 cut(s)	634
SsiI	CCGC	3 cut(s)	5, 310, 583
SspMI	CTAG	2 cut(s)	218, 779
StuI	AGGCCT	1 cut(s)	634
StyD4I	CCNGG	4 cut(s)	187, 353, 493, 634
StyI	CCWWGG	5 cut(s)	33, 67, 626, 705, 825
TaqI	TCGA	9 cut(s)	41, 56, 92, 134, 177, 246, 270, 621, 975
TaqII	GACCGA	1 cut(s)	173
TasI	AATT	3 cut(s)	321, 467, 577
TfiI	GAWTC	3 cut(s)	131, 172, 602
Tru1I	TTAA	3 cut(s)	111, 648, 674
Tru9I	TTAA	3 cut(s)	111, 648, 674
TseFI	GTSAC	2 cut(s)	497, 836
Tsp45I	GTSAC	2 cut(s)	497, 836
TspDTI	ATGAA	2 cut(s)	676, 965
TspGWI	ACGGA	4 cut(s)	359, 372, 598, 930
Van91I	CCANNNNNTGG	1 cut(s)	847
Vha464I	CTTAAG	2 cut(s)	110, 673
VpaK11BI	GGWCC	1 cut(s)	185
XapI	RAATTY	1 cut(s)	467
XbaI	TCTAGA	1 cut(s)	217
XhoI	CTCGAG	2 cut(s)	176, 269
XmnI	GAANNNNTTC	2 cut(s)	578, 755
XspI	CTAG	2 cut(s)	218, 779

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.