MD11G1314900.v1.1
ERF Family

Belongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
Physical Location & Seq
Forward (+)
42720405 .. 42722229
1825 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1314900.v1.1.491

Sequence Viewer

Length: 1038 bp
ATGGCAGGAGGCAAAGCGAAGAAAGAGAAGGCGAGGCCAGCGGGGCACACGCCCTACCAAGGAGGCATATCGTTCCACAAGTCCAAGGGACAGCATATCCTCAAGAACCCCTTGCTCGTCGACTCCATCGTCCAGAAGTCTGGCATCAAATCCACCGATGTCATCCTCGAGATCGGTCCCGGTACTGGTAATCTCACCAAGAAGCTTCTAGAAGCTGGTAAGAGGGTCATCGCCGTCGAGATTGACGCCCGCATGGTCCTCGAGCTGCAGCGCCGCTTCCAGGGCACCCCTCACTCCAACCGCTTGCAGGTGATTCAAGGAGATGTGCTGAAGACTGAGCTTCCCTATTTTGATATATGTGTGGCAAACATCCCTTATCAAATCTCATCTCCCTTGACCTTCAAGTTATTGAAGCACCAACCGGCATTCCGATGTGCCATTATAATGTTTCAGAGGGAATTTGCAATGAGACTGGTTGCCCAACCCGGTGACAAACTCTACTGTCGTCTTACCGTCAACACCCAACTATTGTCACGGGTCTCCCACCTCCTCAAAGTTGGAAGGAACAATTTTCGCCCTCCTCCTAAGGTGGATTCTTCTGTGGTGCGAATTGAGCCCAGGAAACCAGCTTTACTAGTGAACCAAAAGGAGTGGGATGGGTTTTTGCGGATCTGTTTCAATAGGAAGAACAAAACCCTTGGCTCAATTTTTAGGCAGAAAAGTGTCATCAATTTGCTCGAGAAGAATTACAAGACCCTGCAGGCGCTTAATCCTGCGACAGCCCAGGAAGAGGATACTAACGATGTAATCGAGTTTATGGATGAGGACATGGAGATGGATGATGATGGAGTCGATGATGGAACGGAGATGGAGGTGGAGGATGGTAATGCGGAAGGGGAGGTATCCGAATTCAAGAAAAAGGTTCTGGATGTGTTGAAGAAGTCTGGTTTTGAAGGTGAAAGGTCCTCCAAGCTCAAATTACAGCAATTTTTAGACCTACTTTCCCAGTTCAACAAGGATGGTATACACTTCTCCTGA

Protein Analysis

346

Amino Acids

38.91

Weight (kDa)

9.14

Isoelectric Point (pI)

33.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RrnaAD PF00398 24 - 271 2.7e-66 Ribosomal RNA adenine dimethylase
Methyltransf_25 PF13649 55 - 123 7.1e-09 Methyltransferase domain
Methyltransf_12 PF08242 56 - 123 4.6e-07 Methyltransferase domain
Methyltransf_11 PF08241 56 - 123 5.5e-07 Methyltransferase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 443
AarI CACCTGC 1 cut(s) 298
AasI GACNNNNNNGTC 1 cut(s) 128
Acc36I ACCTGC 1 cut(s) 298
AccB1I GGYRCC 1 cut(s) 284
AccI GTMKAC 2 cut(s) 120, 1024
AciI CCGC 6 cut(s) 41, 250, 274, 301, 667, 890
AclWI GGATC 1 cut(s) 677
AcsI RAATTY 2 cut(s) 458, 908
AcuI CTGAAG 1 cut(s) 350
AcyI GRCGYC 1 cut(s) 246
AfaI GTAC 1 cut(s) 184
AfiI CCNNNNNNNGG 5 cut(s) 59, 185, 280, 307, 790
AgsI TTSAA 8 cut(s) 317, 403, 412, 679, 913, 937, 953, 1012
AhlI ACTAGT 1 cut(s) 634
AjnI CCWGG 3 cut(s) 279, 617, 783
AluBI AGCT 6 cut(s) 205, 215, 265, 340, 629, 973
AluI AGCT 6 cut(s) 205, 215, 265, 340, 629, 973
Alw26I GTCTC 2 cut(s) 463, 544
AlwI GGATC 1 cut(s) 677
Ama87I CYCGRG 3 cut(s) 167, 260, 737
AoxI GGCC 1 cut(s) 35
ApeKI GCWGC 2 cut(s) 265, 268
ApoI RAATTY 2 cut(s) 458, 908
AspLEI GCGC 2 cut(s) 273, 766
AspS9I GGNCC 3 cut(s) 176, 256, 963
AsuC2I CCSGG 2 cut(s) 180, 486
AsuHPI GGTGA 4 cut(s) 187, 322, 500, 968
AvaI CYCGRG 3 cut(s) 167, 260, 737
AvaII GGWCC 3 cut(s) 176, 256, 963
AxyI CCTNAGG 1 cut(s) 585
BaeGI GKGCMC 2 cut(s) 48, 287
BanI GGYRCC 1 cut(s) 284
BanII GRGCYC 1 cut(s) 618
BbsI GAAGAC 1 cut(s) 338
BbvI GCAGC 2 cut(s) 252, 280
BccI CCATC 8 cut(s) 134, 650, 829, 839, 851, 862, 875, 1013
BceAI ACGGC 1 cut(s) 218
BcgI CGANNNNNNTGC 2 cut(s) 241, 275
BciT130I CCWGG 3 cut(s) 281, 619, 785
BciVI GTATCC 2 cut(s) 787, 913
BcnI CCSGG 2 cut(s) 180, 486
BcoDI GTCTC 2 cut(s) 463, 544
BcuI ACTAGT 1 cut(s) 634
BfaI CTAG 2 cut(s) 209, 635
BfmI CTRYAG 2 cut(s) 266, 758
BfoI RGCGCY 2 cut(s) 274, 767
BfuAI ACCTGC 1 cut(s) 298
BfuI GTATCC 2 cut(s) 787, 913
BglI GCCNNNNNGGC 1 cut(s) 43
BisI GCNGC 3 cut(s) 266, 269, 274
BlsI GCNGC 3 cut(s) 267, 270, 275
Bme1390I CCNGG 5 cut(s) 180, 281, 486, 619, 785
Bme18I GGWCC 3 cut(s) 176, 256, 963
BmeT110I CYCGRG 3 cut(s) 167, 260, 737
BmgT120I GGNCC 3 cut(s) 176, 256, 963
BmiI GGNNCC 2 cut(s) 178, 286
BmrFI CCNGG 5 cut(s) 180, 281, 486, 619, 785
BmrI ACTGGG 1 cut(s) 1000
BmsI GCATC 1 cut(s) 153
BmuI ACTGGG 1 cut(s) 1000
BpiI GAAGAC 1 cut(s) 338
BpuEI CTTGAG 1 cut(s) 86
BpuMI CCSGG 2 cut(s) 180, 486
BsaHI GRCGYC 1 cut(s) 246
BsaI GGTCTC 1 cut(s) 544
BsaJI CCNNGG 6 cut(s) 58, 84, 280, 617, 697, 783
Bsc4I CCNNNNNNNGG 5 cut(s) 59, 185, 280, 307, 790
Bse118I RCCGGY 1 cut(s) 421
Bse1I ACTGG 3 cut(s) 190, 477, 1006
Bse21I CCTNAGG 1 cut(s) 585
Bse3DI GCAATG 1 cut(s) 471
BseBI CCWGG 3 cut(s) 281, 619, 785
BseDI CCNNGG 6 cut(s) 58, 84, 280, 617, 697, 783
BseGI GGATG 8 cut(s) 162, 369, 661, 826, 844, 886, 934, 1024
BseLI CCNNNNNNNGG 5 cut(s) 59, 185, 280, 307, 790
BseMI GCAATG 1 cut(s) 471
BseMII CTCAG 1 cut(s) 327
BseNI ACTGG 3 cut(s) 190, 477, 1006
BseRI GAGGAG 2 cut(s) 539, 570
BseSI GKGCMC 2 cut(s) 48, 287
BseXI GCAGC 2 cut(s) 252, 280
BshFI GGCC 1 cut(s) 37
BshNI GGYRCC 1 cut(s) 284
BsiHKCI CYCGRG 3 cut(s) 167, 260, 737
BsiSI CCGG 3 cut(s) 180, 422, 486
BslFI GGGAC 2 cut(s) 102, 162
BslI CCNNNNNNNGG 5 cut(s) 59, 185, 280, 307, 790
BsmAI GTCTC 2 cut(s) 463, 544
BsmFI GGGAC 2 cut(s) 102, 162
BsmI GAATGC 1 cut(s) 425
BsnI GGCC 1 cut(s) 37
Bso31I GGTCTC 1 cut(s) 544
BsoBI CYCGRG 3 cut(s) 167, 260, 737
Bsp1286I GDGCHC 3 cut(s) 48, 287, 618
Bsp143I GATC 2 cut(s) 171, 669
BspACI CCGC 6 cut(s) 41, 250, 274, 301, 667, 890
BspANI GGCC 1 cut(s) 37
BspCNI CTCAG 1 cut(s) 328
BspLI GGNNCC 2 cut(s) 178, 286
BspMAI CTGCAG 2 cut(s) 270, 762
BspMI ACCTGC 1 cut(s) 298
BspPI GGATC 1 cut(s) 677
BspT107I GGYRCC 1 cut(s) 284
BspTNI GGTCTC 1 cut(s) 544
BsrDI GCAATG 1 cut(s) 471
BsrFI RCCGGY 1 cut(s) 421
BsrI ACTGG 3 cut(s) 190, 477, 1006
BssAI RCCGGY 1 cut(s) 421
BssECI CCNNGG 6 cut(s) 58, 84, 280, 617, 697, 783
BssMI GATC 2 cut(s) 171, 669
BssNAI GTATAC 1 cut(s) 1025
BssNI GRCGYC 1 cut(s) 246
BssT1I CCWWGG 3 cut(s) 58, 84, 697
Bst1107I GTATAC 1 cut(s) 1025
Bst2UI CCWGG 3 cut(s) 281, 619, 785
Bst4CI ACNGT 2 cut(s) 503, 514
Bst6I CTCTTC 1 cut(s) 783
BstACI GRCGYC 1 cut(s) 246
BstC8I GCNNGC 4 cut(s) 39, 250, 305, 762
BstDEI CTNAG 2 cut(s) 336, 585
BstF5I GGATG 8 cut(s) 162, 369, 661, 826, 844, 886, 934, 1024
BstH2I RGCGCY 2 cut(s) 274, 767
BstHHI GCGC 2 cut(s) 273, 766
BstKTI GATC 2 cut(s) 174, 672
BstMAI GTCTC 2 cut(s) 463, 544
BstMBI GATC 2 cut(s) 171, 669
BstMWI GCNNNNNNNGC 4 cut(s) 38, 43, 282, 613
BstNI CCWGG 3 cut(s) 281, 619, 785
BstSCI CCNGG 5 cut(s) 178, 279, 484, 617, 783
BstSFI CTRYAG 2 cut(s) 266, 758
BstSLI GKGCMC 2 cut(s) 48, 287
BstV1I GCAGC 2 cut(s) 252, 280
BstV2I GAAGAC 1 cut(s) 338
BstX2I RGATCY 1 cut(s) 669
BstXI CCANNNNNNTGG 1 cut(s) 140
BstYI RGATCY 1 cut(s) 669
BstZ17I GTATAC 1 cut(s) 1025
Bsu36I CCTNAGG 1 cut(s) 585
BsuI GTATCC 2 cut(s) 787, 913
BsuRI GGCC 1 cut(s) 37
BtgZI GCGATG 1 cut(s) 214
BtsCI GGATG 8 cut(s) 162, 369, 661, 826, 844, 886, 934, 1024
BveI ACCTGC 1 cut(s) 298
Cac8I GCNNGC 4 cut(s) 39, 250, 305, 762
CfoI GCGC 2 cut(s) 273, 766
Cfr10I RCCGGY 1 cut(s) 421
Cfr13I GGNCC 3 cut(s) 176, 256, 963
CseI GACGC 1 cut(s) 254
Csp6I GTAC 1 cut(s) 183
CspCI CAANNNNNGTGG 2 cut(s) 632, 667
CviAII CATG 2 cut(s) 253, 829
CviQI GTAC 1 cut(s) 183
DdeI CTNAG 2 cut(s) 336, 585
DpnI GATC 2 cut(s) 173, 671
DpnII GATC 2 cut(s) 171, 669
DrdI GACNNNNNNGTC 1 cut(s) 128
DseDI GACNNNNNNGTC 1 cut(s) 128
Eam1104I CTCTTC 1 cut(s) 783
EarI CTCTTC 1 cut(s) 783
Eco130I CCWWGG 3 cut(s) 58, 84, 697
Eco24I GRGCYC 1 cut(s) 618
Eco31I GGTCTC 1 cut(s) 544
Eco47I GGWCC 3 cut(s) 176, 256, 963
Eco57I CTGAAG 1 cut(s) 350
Eco81I CCTNAGG 1 cut(s) 585
Eco88I CYCGRG 3 cut(s) 167, 260, 737
EcoO109I RGGNCCY 1 cut(s) 963
EcoRI GAATTC 1 cut(s) 908
EcoRII CCWGG 3 cut(s) 279, 617, 783
EcoT14I CCWWGG 3 cut(s) 58, 84, 697
EcoT38I GRGCYC 1 cut(s) 618
ErhI CCWWGG 3 cut(s) 58, 84, 697
FaeI CATG 2 cut(s) 256, 832
FaiI YATR 9 cut(s) 68, 96, 254, 356, 358, 443, 818, 830, 1025
FalI AAGNNNNNCTT 2 cut(s) 95, 127
FaqI GGGAC 2 cut(s) 102, 162
FatI CATG 2 cut(s) 252, 828
FauI CCCGC 2 cut(s) 34, 257
FblI GTMKAC 2 cut(s) 120, 1024
Fnu4HI GCNGC 3 cut(s) 266, 269, 274
FokI GGATG 8 cut(s) 149, 356, 668, 833, 851, 893, 941, 1031
FriOI GRGCYC 1 cut(s) 618
Fsp4HI GCNGC 3 cut(s) 266, 269, 274
FspBI CTAG 2 cut(s) 209, 635
GlaI GCGC 2 cut(s) 272, 765
GluI GCNGC 3 cut(s) 266, 269, 274
HaeII RGCGCY 2 cut(s) 274, 767
HaeIII GGCC 1 cut(s) 37
HapII CCGG 3 cut(s) 180, 422, 486
HgaI GACGC 1 cut(s) 254
HhaI GCGC 2 cut(s) 273, 766
Hin1I GRCGYC 1 cut(s) 246
Hin1II CATG 2 cut(s) 256, 832
Hin6I GCGC 2 cut(s) 271, 764
HinP1I GCGC 2 cut(s) 271, 764
HincII GTYRAC 2 cut(s) 121, 517
HindII GTYRAC 2 cut(s) 121, 517
HindIII AAGCTT 1 cut(s) 203
HinfI GANTC 4 cut(s) 122, 313, 593, 849
HpaII CCGG 3 cut(s) 180, 422, 486
HphI GGTGA 4 cut(s) 187, 322, 500, 968
Hpy166II GTNNAC 4 cut(s) 121, 517, 640, 1025
Hpy188I TCNGA 3 cut(s) 431, 453, 907
Hpy188III TCNNGA 9 cut(s) 103, 133, 169, 209, 238, 739, 913, 926, 1035
Hpy8I GTNNAC 4 cut(s) 121, 517, 640, 1025
Hpy99I CGWCG 2 cut(s) 122, 239
HpyAV CCTTC 5 cut(s) 22, 409, 555, 887, 947
HpyCH4III ACNGT 2 cut(s) 503, 514
HpyCH4V TGCA 4 cut(s) 268, 307, 464, 760
HpyF10VI GCNNNNNNNGC 4 cut(s) 38, 43, 282, 613
HpyF3I CTNAG 2 cut(s) 336, 585
Hsp92I GRCGYC 1 cut(s) 246
Hsp92II CATG 2 cut(s) 256, 832
HspAI GCGC 2 cut(s) 271, 764
Kzo9I GATC 2 cut(s) 171, 669
Lsp1109I GCAGC 2 cut(s) 252, 280
LweI GCATC 1 cut(s) 153
MaeI CTAG 2 cut(s) 209, 635
MaeIII GTNAC 2 cut(s) 488, 531
MalI GATC 2 cut(s) 173, 671
MboI GATC 2 cut(s) 171, 669
MboII GAAGA 7 cut(s) 31, 343, 588, 697, 754, 800, 949
MflI RGATCY 1 cut(s) 669
MhlI GDGCHC 3 cut(s) 48, 287, 618
MluCI AATT 9 cut(s) 458, 568, 609, 705, 730, 745, 908, 977, 986
MlyI GAGTC 2 cut(s) 116, 858
MmeI TCCRAC 2 cut(s) 321, 538
MseI TTAA 1 cut(s) 768
MslI CAYNNNNRTG 3 cut(s) 430, 443, 833
MspA1I CMGCKG 1 cut(s) 41
MspI CCGG 3 cut(s) 180, 422, 486
MspR9I CCNGG 5 cut(s) 180, 281, 486, 619, 785
Mva1269I GAATGC 1 cut(s) 425
MvaI CCWGG 3 cut(s) 281, 619, 785
MwoI GCNNNNNNNGC 4 cut(s) 38, 43, 282, 613
NciI CCSGG 2 cut(s) 180, 486
NdeII GATC 2 cut(s) 171, 669
NlaIII CATG 2 cut(s) 256, 832
NlaIV GGNNCC 2 cut(s) 178, 286
NmuCI GTSAC 2 cut(s) 488, 531
PaeR7I CTCGAG 3 cut(s) 167, 260, 737
PaqCI CACCTGC 1 cut(s) 298
PcsI WCGNNNNNNNCGW 2 cut(s) 126, 807
PctI GAATGC 1 cut(s) 425
PfeI GAWTC 2 cut(s) 313, 593
PkrI GCNGC 3 cut(s) 267, 270, 275
PleI GAGTC 2 cut(s) 116, 857
PpsI GAGTC 2 cut(s) 116, 857
PpuMI RGGWCCY 1 cut(s) 963
PsiI TTATAA 1 cut(s) 443
Psp5II RGGWCCY 1 cut(s) 963
Psp6I CCWGG 3 cut(s) 279, 617, 783
PspGI CCWGG 3 cut(s) 279, 617, 783
PspN4I GGNNCC 2 cut(s) 178, 286
PspPI GGNCC 3 cut(s) 176, 256, 963
PspPPI RGGWCCY 1 cut(s) 963
PspXI VCTCGAGB 1 cut(s) 260
PstI CTGCAG 2 cut(s) 270, 762
PsuI RGATCY 1 cut(s) 669
RsaI GTAC 1 cut(s) 184
RsaNI GTAC 1 cut(s) 183
RseI CAYNNNNRTG 3 cut(s) 430, 443, 833
SalI GTCGAC 1 cut(s) 119
SaqAI TTAA 1 cut(s) 768
SatI GCNGC 3 cut(s) 266, 269, 274
Sau3AI GATC 2 cut(s) 171, 669
Sau96I GGNCC 3 cut(s) 176, 256, 963
SbfI CCTGCAGG 1 cut(s) 762
SchI GAGTC 2 cut(s) 116, 858
ScrFI CCNGG 5 cut(s) 180, 281, 486, 619, 785
SdaI CCTGCAGG 1 cut(s) 762
SduI GDGCHC 3 cut(s) 48, 287, 618
SfaNI GCATC 1 cut(s) 153
SfcI CTRYAG 2 cut(s) 266, 758
Sfr274I CTCGAG 3 cut(s) 167, 260, 737
SinI GGWCC 3 cut(s) 176, 256, 963
SlaI CTCGAG 3 cut(s) 167, 260, 737
SmiMI CAYNNNNRTG 3 cut(s) 430, 443, 833
SmlI CTYRAG 4 cut(s) 101, 167, 260, 737
SmoI CTYRAG 4 cut(s) 101, 167, 260, 737
SpeI ACTAGT 1 cut(s) 634
Sse8387I CCTGCAGG 1 cut(s) 762
Sse9I AATT 9 cut(s) 458, 568, 609, 705, 730, 745, 908, 977, 986
SsiI CCGC 6 cut(s) 41, 250, 274, 301, 667, 890
SspMI CTAG 2 cut(s) 209, 635
StyD4I CCNGG 5 cut(s) 178, 279, 484, 617, 783
StyI CCWWGG 3 cut(s) 58, 84, 697
TaaI ACNGT 2 cut(s) 503, 514
TaqI TCGA 7 cut(s) 120, 168, 237, 261, 738, 810, 852
TaqII GACCGA 1 cut(s) 164
TasI AATT 9 cut(s) 458, 568, 609, 705, 730, 745, 908, 977, 986
TauI GCSGC 1 cut(s) 276
TfiI GAWTC 2 cut(s) 313, 593
Tru1I TTAA 1 cut(s) 768
Tru9I TTAA 1 cut(s) 768
TseFI GTSAC 2 cut(s) 488, 531
TseI GCWGC 2 cut(s) 265, 268
Tsp45I GTSAC 2 cut(s) 488, 531
TspGWI ACGGA 1 cut(s) 878
VpaK11BI GGWCC 3 cut(s) 176, 256, 963
XapI RAATTY 2 cut(s) 458, 908
XbaI TCTAGA 1 cut(s) 208
XhoI CTCGAG 3 cut(s) 167, 260, 737
XmiI GTMKAC 2 cut(s) 120, 1024
XspI CTAG 2 cut(s) 209, 635
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.