pycom01g04480

Bromodomain and WD repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
OG0007947
Physical Location & Seq
Forward (+)
3344277 .. 3351148
6872 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom01g04480.16

Sequence Viewer

Length: 5256 bp
ATGAAGATTAAGAGATCGAACGGTTTCAATTATTTTGGAATCTTTTCAGGCACATCTGAGTCAAGTTTTGAAATTTTATTCCTGTGTTTCAGGTTTCCGGTAAATGGGTTGGGCAGCCTCTTCAGTTGCAGTCAATTTCTCTGCCTCTCTTTTTTACTTTATGGTTTTCTACTTATGCTGTTTCAACTTAATGCCCGACGATTGGTACGAATAATGATATACGCGTGTGAACTCATGAACACAAAATCTCTTATTGCTTGTTTGAGCTCATCCAAGTTATACCAAGTTATAGCAGCAGGCTGGCTTGACAACAGTTGGGTTTGTAGAGAGGTTATTTCCGATTCGAACCCTACGCCAAACCTTTTTGCCTTGGTTAGCTTGGTTTGCAATAAGTTGAGTGAAGGGGACAAAAATTGCACTCCATGCTTGCAACATCCTCCCCTTGGGAACAACCATGAAGGTCATGTTGTCGAGGCTGGTGGTCTACTTAGTAATTTACTAAGAAAACAAAAAGAAATTTCTCTAGGTGTTATATGGTGCTTCATTTCTTTAGGCAGATTTCATTTGATCATATACTGTATAGGTTGGCCTAGTCATTTTATTTCCTATGCTGGGTTTTTAAGAGAGAGATCGCTTGGTCAAGCTTCTAAGGCAATTGCTACTGAGTATAGCCACTCCTTTACATGGCAAGGTTGGAAGAAGTCCTCTGAATGCAGCTCATGTCCCTACATTACTGGGAACTGGTTCCTTCTCCTCTCTGATTCTCGATTGGTGTTTTTTTCTGCTTGTGGATATATTGAAATCTTCTGTATCACTAATAAATTACTTGAAAAGATGATTGTCTTGATTTACAGTGGTAAATACCCTTCCTCACGATGTCCTTTTAAGAAATATGAATTTCTGCTGTACCTTTTCTATGACTGCCTGGGACATAACAGTTATCTAACGTGTTGTGTTTGTGTAACACCTATAAGATCCCTCTTAACCTATTGCATCTTTGAAAGTTCTGTCTTTCCTGCTCATAGGAATGTTTGGCTCAAATACTTTTTTGGTTGTAGGCTGCTTCATGACCTTTTCTTTTTCACTACCTTGTATCTTTTCAGGTTCCAGACATTAGGTTTCTTCATATGTGATAGGGATAAGGAAAATAAGAGAGTTAAGCCCCTGCCTGCGCACCTGCGTTGGCCTTGCATGCAGGCTGATCAAGTTCATGGGCTTAGTTTAAGGGAAATTGGAGGAGGTTTCACAAAGCATCATCGAGCTCCATCCATTCGCTCTGCGTGTTATGCGATTGCTAAACCATCAAATATGGTGCAGAAGATGAACAACAAAAAGAAGCTACAGGGGTCACCTAAACAATTTATTTTCTGGGGGCATCATAATGCTGTCTGCTGTGGTATGGCTCACTTGAAACAAATTATTTTCTGGGAGTTTGATTTCTTAAGGGCATATAGACACTATCCAAGCATTTTCCTTTTTGTGTTTGTAGGGAGTTTTAAACATTTTCCGGTTCCTTCTACTGATATTATCTCCATGTGTTCCATAATACATAATTACATTTACATTTTGCACTTTGTATATGAATTTGGGAATTTGTATTACTATGAACTTTTTGCGAAAAATATGACCGACGTTATCACGGGTGCAGATCGATCGGCTTGTGAAGATATGGTCAATGGAAACTGCACTTTGCTTGGCTATCTACAAACTCTTTCTTTCTCTCACCCTCTATCGGTCTATCCCCCAAACACCCGCCCTCTCCTCCTCCTCCCTCCCTCCCTCCCTCCCTGTTTGGGGGGCTTCATTTGTTATACTGACTTGGCTGTAAGTTCGAACAATGCTTTGGTGGCATCTGCTTCAAATGACTTTTCCATTCGAGTTGTATGTATACCCTACCATTTAACATGTCAGTTTGGCTTCTTTTCTTATGTATCAGGATTTCCAATTTCAGTTCTTCAGGGGCATACTGGGGCTGTGACTGCTATTGCTTTTAGTACCAGGTTTAGTGCTGTTTACCAACTTTTTTTTTCCCCCTTTCCCTGGTTGTATCCTGAGTTAATGACATTTGTAGGTCATCAGATGATGGGACTTGTCGAATCTGGGATGCTAGGTCCTCCCAATGCCCGCTATAATGCTTCTGAAACTGTTGCCTTATTTGGGCGATGGGACTTACATCAAGTGATGTTTACTCGCAGGGAAGAGCAATGCTATTTCAATCACTGGACCCTCCTCGAGCAATGGTCCACAGAGCCATCAAATACTTTGTTGTGCTTACAACGCCAATGGGACTGTTTTTGTCACAGTTTAACATTAGTTCATATGATTAGTCCACAGCTGCCTTTTGATTTTTTACCAAAACCAAACTACTTGCAGGTCTGGAATGCTTTAAAATCTAATACAGATAACTCAGAACAATCAATACATGAGATGGATGTACTGGCAGGCCACGAGAATGACGTGAATTATGTCCAATTCAGGTTTGTTGTCCTAATTGAAGAGGAGAAAGGAAATATTAGCACCAGTTCTTCTGGTGATCCAGACTGCAGTGAAGAAGACAGTGAACCTGGATGCAGTCATAAGGATGGCCATCGTCGATCAAGGAGAAAAAGACCAAGGGTAAAAATGCTCTATCTATCTTTAGATTCTATACCAGTTGAGTCTTCTGAGAGGCGTGTCAAGAAAAAGAGAGTGGGCGAGCATGATCGCGTTTTATTTGGGATTAAAAGAACTAAAAATTCAAAAGGTGGCCAGAAAGTTTCAAAGAGGAAGTCTTCTAGAGCAAAGACATTGAGACCCCAGCGAGTAGCAGCATGCAATGCTCGAACTGTGTTTTCTCAGAACCCTGGAACATCTACAGAAGGAGAAGAAGATGATTGGGAAGATGATTCATCGAATAGTGAGTCTCTTCAGCAAGAATTCCACACTCAAAACGATGATGGGGACTTCCAGATAATGCAACAAAACCATACTAAAGAAGAACCATCTCGACATGAGTTTGGCAATATAGTGAAGCATCGTGTAGTTTGTTCGTCTCAGTCAAACGTCAGAAGCATGCCAAAATTGGTTTTTAAGATTAAGAAGCAAGAGGCTCCAAAGGATGTAAAACTCAAAGATGTCACTCCAGATAACAGGATTATTAACAGCTCTGTGGATCCAGATTCCTCTTCGGTGGATGTGGTTGACCTAAAGTTTTCAAGAAATCTCTTAGGCAATGATTTGACAGATACTGGGGAAACTATAAAGACAGAGAATTCATTGGAAGCATCCGCAAATTACCAGGATAGCAGAGTCAGATTGGAAGCAGCTAGTTGTAATGTCCATATAGAAGAGATGAATAATGTGCATCGGTATGTTAATCCTGAGAATAATTGTGAACAATTTTGTAATCATTCAAAAATTAAGGGAAGGGAAAATTATGAAGGTGTCTTGCGTTGCAGGGATGAGGAACATACTGGAACACGTGCATTTGAGCGATCGATCTGGATGGTCTCAAAAGTAGAGAGCTTTGTCATACTGACGAGGCCCTTGTATCTTCATCATTTGATTACTCAGCTTTGGGCGAGCACAAACAAAAAGGAATCGAGGGGAGTTTTTCCTGCACAAAACTCCACAAATTCTAGAGATTTAATCCCCAATGATTCTTCAAGCATGGATCCAAATTCAAATTTTGGGGTACGGAAAGTGGGTGGAGGTGCTGGCAGATCAACTTCTTTCAAGTTTGCAAAATATGCAATAAATATCAACGACCATCATGATTCAGGAAAGGATCTCCCCGCAGCTGCAACCAATGCAATACGTGGAACAAGAACCTTTAAGATCAAAGCAACTTCACGGAAGGTGGACTCTGTGAGTAGGTCGAATCACATGAGTTTCCCGATAAAACCCATTTGTCTTGTTAGTTTGTGGGAATTGGAATTCAAAGCTCCAATTATCATTAGGAAAGACGTAATCATTCTGAAACTGTTTTCTATCATCAAGCTGTTCAGAAGGCGCATTCTTAATCCATTATCGGTTGTTTGGTGTGATGTGCATCAAAATCTGTTCCGAAATGATAATTATATTTGCCAGAAGATTTTCTCAACTACTGTTGTGATTAATTTAAGAAATTATGTTATAGGGGTTTGCTTGTGCTTCTGTACGCAGGTGATTCAAGGAGATGTGCTCAAGACTGAGGAGCTTCCCTATTTCGATATACGTGTGGCAAACATCCCTTATCAAATCTCATCTCCCTTGACCTTCGAGTTACTGAAGCACCAACCTGCTTTCCCATGTGCCATTATAATGTTTCAGAGGGAAAGTCTCATTGCACATCCCCGTGACAAGCTCTATTGTCGTCTTACCATCAACACCCAACTCTTGTCCCGGGTATCTCACCTCCTCAAAGTTGGAAGGAACAATTTTCGCCCCCCGCCTAAGGTGGATTCTTCTGTCGAGTGGGATGGCTTTTTGCGGATCTGTCTCAATAGGAAAAACAAAACCCTTGGCTCAATTTTTAGGCAGAAAAGTGTCATCAATTTGCTCGAGAAGAATTACAAGACCCTGCAGGCGCTTAATCCTGCAACAGCCCAAGAAGAGGATACTAATGATGTGATGGAGTTTATGGATGAGGACATGGAGATGGATGATGATGGGATGGAGATGGAGGTGGAGGGTGTTAATGCGGAAGGGGAGATATCCGAATTCAAGAAAAAGGTGCTGGATTTGTTGAAGAAGTCTGGTTTTGAAGGCGAAAGGTCCTCCAAGCTCAAATTACAGCAATTTTTAGACCTACTTTCCCGGTTAACAAGGATGACATACACTTCATCTGATCTTAGGATCCAGTGTTATATTTCTTACAAGATTATTATACATTTTACTCAACCCAATTCTGTTAGGTTGCATCAAGTCTTTCTCTTGTTTTATTTATATACGTCGGATGTCCGATGGTTCTCCAAAGAATGCAGACATGAGATTTCACGGTTTTTAGTCGATTTTTCGAATTACTACAAAATCCCGCACCATTTTGAATCGGTAGTGTCATTGATTAATCTAATTGGATTCAATCGTCTACCACTGCGATGCATCTCCTCAAGGAAAAAGACGGTAACGACAGACATTTGCCTTCTTTTTATTTTGTTTGAACGGAACACATTGGTGGTATGCCAATTGAAATGCAGGTGCATCTGGTCCGCCTTCCATACGTCTCATTTGACACGAAACTTCAAATTGCAACGAAAAGAAATAAAGATTAACCGATTACGATACAAAGCTTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001932 GO:0001934 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006606 GO:0006810 GO:0006886 GO:0006913 GO:0006996 GO:0007010 GO:0007088 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007169 GO:0007346 GO:0008104 GO:0008150 GO:0008284 GO:0008286 GO:0008360 GO:0009719 GO:0009725 GO:0009889 GO:0009891 GO:0009893 GO:0009966 GO:0009967 GO:0009968 GO:0009987 GO:0010033 GO:0010243 GO:0010468 GO:0010556 GO:0010557 GO:0010562 GO:0010564 GO:0010604 GO:0010628 GO:0010638 GO:0010646 GO:0010647 GO:0010648 GO:0010799 GO:0010800 GO:0010941 GO:0015031 GO:0015833 GO:0016043 GO:0017038 GO:0019219 GO:0019220 GO:0019222 GO:0022603 GO:0022604 GO:0023051 GO:0023052 GO:0023056 GO:0023057 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031399 GO:0031401 GO:0032268 GO:0032270 GO:0032868 GO:0032869 GO:0032870 GO:0033036 GO:0033043 GO:0033135 GO:0033138 GO:0033365 GO:0034504 GO:0034613 GO:0040008 GO:0042127 GO:0042221 GO:0042325 GO:0042327 GO:0042393 GO:0042886 GO:0042981 GO:0043066 GO:0043067 GO:0043069 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043434 GO:0043567 GO:0043568 GO:0044424 GO:0044464 GO:0045184 GO:0045787 GO:0045840 GO:0045893 GO:0045931 GO:0045935 GO:0045937 GO:0045944 GO:0046907 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0048585 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051128 GO:0051130 GO:0051169 GO:0051170 GO:0051171 GO:0051173 GO:0051174 GO:0051179 GO:0051234 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051641 GO:0051649 GO:0051716 GO:0051726 GO:0051781 GO:0051783 GO:0051785 GO:0060255 GO:0060548 GO:0065007 GO:0065008 GO:0070577 GO:0070727 GO:0070887 GO:0071310 GO:0071375 GO:0071417 GO:0071495 GO:0071702 GO:0071705 GO:0071840 GO:0072594 GO:0080090 GO:0090068 GO:0140030 GO:0140033 GO:1901652 GO:1901653 GO:1901698 GO:1901699 GO:1901700 GO:1901701 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141 GO:2001233 GO:2001234 GO:2001236 GO:2001237
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Auxin_resp Bromodomain WD40

Protein Analysis

1752

Amino Acids

201.24

Weight (kDa)

8.93

Isoelectric Point (pI)

45.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 4280
AarI CACCTGC 3 cut(s) 1185, 4132, 5145
Acc16I TGCGCA 1 cut(s) 1173
Acc36I ACCTGC 5 cut(s) 1185, 2362, 4132, 4267, 5145
AccI GTMKAC 3 cut(s) 484, 1888, 5047
AccII CGCG 2 cut(s) 224, 2706
AciI CCGC 9 cut(s) 1753, 2125, 3267, 3774, 4409, 4450, 4661, 4994, 5169
AcoI YGGCCR 2 cut(s) 2584, 2746
AcuI CTGAAG 4 cut(s) 106, 1940, 2891, 4268
AcvI CACGTG 1 cut(s) 3461
AfaI GTAC 6 cut(s) 207, 908, 1996, 2436, 3675, 4138
AflII CTTAAG 1 cut(s) 1441
AflIII ACRYGT 5 cut(s) 222, 947, 1904, 3458, 4195
AjiI CACGTC 1 cut(s) 2458
AjnI CCWGG 6 cut(s) 924, 1997, 2039, 2563, 2842, 3276
AjuI GAANNNNNNNTTGG 2 cut(s) 1826, 1858
AleI CACNNNNGTG 1 cut(s) 5132
Alw21I GWGCWC 4 cut(s) 269, 1264, 3566, 4164
Alw26I GTCTC 7 cut(s) 2785, 2907, 3036, 3493, 4304, 4463, 5187
AlwNI CAGNNNCTG 1 cut(s) 3227
Ama87I CYCGRG 3 cut(s) 2231, 4362, 4520
AoxI GGCC 6 cut(s) 587, 1184, 2443, 2584, 2746, 3521
ApeKI GCWGC 9 cut(s) 114, 293, 714, 1060, 2335, 2807, 3302, 3776, 3779
ArsI GACNNNNNNTTYG 4 cut(s) 2753, 2785, 2885, 2917
AseI ATTAAT 2 cut(s) 4095, 5025
Asp700I GAANNNNTTC 4 cut(s) 23, 43, 743, 4073
AspLEI GCGC 3 cut(s) 1174, 3993, 4549
AspS9I GGNCC 6 cut(s) 2111, 2223, 2241, 3522, 4734, 5166
AsuC2I CCSGG 3 cut(s) 4363, 4364, 4777
AsuHPI GGTGA 5 cut(s) 1341, 1715, 2543, 4156, 4364
AsuII TTCGAA 3 cut(s) 344, 1832, 4976
AvaI CYCGRG 3 cut(s) 2231, 4362, 4520
AvaII GGWCC 5 cut(s) 2111, 2223, 2241, 4734, 5166
AxyI CCTNAGG 1 cut(s) 4413
BalI TGGCCA 2 cut(s) 2586, 2748
BamHI GGATCC 3 cut(s) 3151, 3652, 4815
BanII GRGCYC 2 cut(s) 269, 1264
BarI GAAGNNNNNNTAC 2 cut(s) 850, 882
BauI CACGAG 1 cut(s) 2447
BbrPI CACGTG 1 cut(s) 3461
BbsI GAAGAC 3 cut(s) 2559, 2652, 2763
Bbv12I GWGCWC 4 cut(s) 269, 1264, 3566, 4164
BbvI GCAGC 9 cut(s) 126, 305, 726, 1047, 2322, 2819, 3314, 3766, 3788
BcgI CGANNNNNNTGC 2 cut(s) 1635, 1669
BciT130I CCWGG 6 cut(s) 926, 1999, 2041, 2565, 2844, 3278
BciVI GTATCC 2 cut(s) 2058, 4570
BclI TGATCA 2 cut(s) 567, 1201
BcnI CCSGG 3 cut(s) 4363, 4364, 4777
BcoDI GTCTC 7 cut(s) 2785, 2907, 3036, 3493, 4304, 4463, 5187
BfaI CTAG 6 cut(s) 524, 591, 2108, 2775, 3306, 3618
BfmI CTRYAG 4 cut(s) 1340, 2542, 2853, 4541
BfoI RGCGCY 1 cut(s) 4550
BfrI CTTAAG 1 cut(s) 1441
BfuAI ACCTGC 5 cut(s) 1185, 2362, 4132, 4267, 5145
BfuI GTATCC 2 cut(s) 2058, 4570
BisI GCNGC 9 cut(s) 115, 294, 715, 1061, 2336, 2808, 3303, 3777, 3780
BlsI GCNGC 9 cut(s) 116, 295, 716, 1062, 2337, 2809, 3304, 3778, 3781
Bme1390I CCNGG 9 cut(s) 926, 1999, 2041, 2565, 2844, 3278, 4363, 4364, 4777
Bme18I GGWCC 5 cut(s) 2111, 2223, 2241, 4734, 5166
BmeT110I CYCGRG 3 cut(s) 2231, 4362, 4520
BmgBI CACGTC 1 cut(s) 2458
BmgT120I GGNCC 6 cut(s) 2111, 2223, 2241, 3522, 4734, 5166
BmiI GGNNCC 8 cut(s) 746, 1106, 1512, 2225, 3090, 3153, 3654, 4817
BmrFI CCNGG 9 cut(s) 926, 1999, 2041, 2565, 2844, 3278, 4363, 4364, 4777
BmrI ACTGGG 3 cut(s) 744, 1977, 3237
BmuI ACTGGG 3 cut(s) 744, 1977, 3237
BpiI GAAGAC 3 cut(s) 2559, 2652, 2763
BplI GAGNNNNNCTC 2 cut(s) 4146, 4178
BpmI CTGGAG 1 cut(s) 3105
Bpu14I TTCGAA 3 cut(s) 344, 1832, 4976
BpuEI CTTGAG 2 cut(s) 4148, 5053
BpuMI CCSGG 3 cut(s) 4363, 4364, 4777
Bsa29I ATCGAT 2 cut(s) 1651, 3476
BsaAI YACGTR 3 cut(s) 3461, 3797, 4196
BsaBI GATNNNNATC 2 cut(s) 2586, 4029
BsaI GGTCTC 2 cut(s) 2785, 3493
BsaJI CCNNGG 8 cut(s) 369, 442, 925, 2039, 2612, 2842, 4362, 4480
BsaWI WCCGGW 2 cut(s) 97, 1507
Bse21I CCTNAGG 1 cut(s) 4413
Bse3DI GCAATG 5 cut(s) 2210, 2243, 2821, 3217, 4302
Bse8I GATNNNNATC 2 cut(s) 2586, 4029
BseBI CCWGG 6 cut(s) 926, 1999, 2041, 2565, 2844, 3278
BseCI ATCGAT 2 cut(s) 1651, 3476
BseDI CCNNGG 8 cut(s) 369, 442, 925, 2039, 2612, 2842, 4362, 4480
BseJI GATNNNNATC 2 cut(s) 2586, 4029
BseMI GCAATG 5 cut(s) 2210, 2243, 2821, 3217, 4302
BseXI GCAGC 9 cut(s) 126, 305, 726, 1047, 2322, 2819, 3314, 3766, 3788
BseYI CCCAGC 2 cut(s) 611, 2796
BsgI GTGCAG 4 cut(s) 1334, 1665, 1669, 3582
Bsh1236I CGCG 2 cut(s) 224, 2706
Bsh1285I CGRYCG 2 cut(s) 1655, 3476
BshFI GGCC 6 cut(s) 589, 1186, 2445, 2586, 2748, 3523
BshVI ATCGAT 2 cut(s) 1651, 3476
BsiEI CGRYCG 2 cut(s) 1655, 3476
BsiHKAI GWGCWC 4 cut(s) 269, 1264, 3566, 4164
BsiHKCI CYCGRG 3 cut(s) 2231, 4362, 4520
BsiSI CCGG 4 cut(s) 98, 1508, 4363, 4777
BslFI GGGAC 8 cut(s) 419, 708, 942, 2100, 2180, 2300, 2954, 4345
BsmAI GTCTC 7 cut(s) 2785, 2907, 3036, 3493, 4304, 4463, 5187
BsmBI CGTCTC 2 cut(s) 3036, 5187
BsmFI GGGAC 8 cut(s) 419, 708, 942, 2100, 2180, 2300, 2954, 4345
BsmI GAATGC 4 cut(s) 716, 2386, 3993, 4943
BsnI GGCC 6 cut(s) 589, 1186, 2445, 2586, 2748, 3523
Bso31I GGTCTC 2 cut(s) 2785, 3493
BsoBI CYCGRG 3 cut(s) 2231, 4362, 4520
Bsp119I TTCGAA 3 cut(s) 344, 1832, 4976
Bsp1286I GDGCHC 4 cut(s) 269, 1264, 3566, 4164
BspACI CCGC 9 cut(s) 1753, 2125, 3267, 3774, 4409, 4450, 4661, 4994, 5169
BspANI GGCC 6 cut(s) 589, 1186, 2445, 2586, 2748, 3523
BspDI ATCGAT 2 cut(s) 1651, 3476
BspFNI CGCG 2 cut(s) 224, 2706
BspHI TCATGA 3 cut(s) 234, 1066, 3751
BspLI GGNNCC 8 cut(s) 746, 1106, 1512, 2225, 3090, 3153, 3654, 4817
BspMAI CTGCAG 2 cut(s) 2546, 4545
BspMI ACCTGC 5 cut(s) 1185, 2362, 4132, 4267, 5145
BspQI GCTCTTC 1 cut(s) 2193
BspT104I TTCGAA 3 cut(s) 344, 1832, 4976
BspTI CTTAAG 1 cut(s) 1441
BspTNI GGTCTC 2 cut(s) 2785, 3493
BsrDI GCAATG 5 cut(s) 2210, 2243, 2821, 3217, 4302
BssECI CCNNGG 8 cut(s) 369, 442, 925, 2039, 2612, 2842, 4362, 4480
BssNAI GTATAC 1 cut(s) 1889
BssSI CACGAG 1 cut(s) 2447
BssT1I CCWWGG 4 cut(s) 369, 442, 2612, 4480
Bst1107I GTATAC 1 cut(s) 1889
Bst2BI CACGAG 1 cut(s) 2447
Bst2UI CCWGG 6 cut(s) 926, 1999, 2041, 2565, 2844, 3278
Bst6I CTCTTC 7 cut(s) 125, 2193, 2490, 2910, 3169, 3321, 4566
BstAFI CTTAAG 1 cut(s) 1441
BstAPI GCANNNNNTGC 4 cut(s) 423, 2816, 3728, 3788
BstBAI YACGTR 3 cut(s) 3461, 3797, 4196
BstBI TTCGAA 3 cut(s) 344, 1832, 4976
BstEII GGTNACC 1 cut(s) 1347
BstFNI CGCG 2 cut(s) 224, 2706
BstH2I RGCGCY 1 cut(s) 4550
BstHHI GCGC 3 cut(s) 1174, 3993, 4549
BstMAI GTCTC 7 cut(s) 2785, 2907, 3036, 3493, 4304, 4463, 5187
BstMCI CGRYCG 2 cut(s) 1655, 3476
BstNI CCWGG 6 cut(s) 926, 1999, 2041, 2565, 2844, 3278
BstNSI RCATGY 4 cut(s) 1195, 1908, 2814, 3055
BstPI GGTNACC 1 cut(s) 1347
BstSCI CCNGG 9 cut(s) 924, 1997, 2039, 2563, 2842, 3276, 4361, 4362, 4775
BstSFI CTRYAG 4 cut(s) 1340, 2542, 2853, 4541
BstUI CGCG 2 cut(s) 224, 2706
BstV1I GCAGC 9 cut(s) 126, 305, 726, 1047, 2322, 2819, 3314, 3766, 3788
BstV2I GAAGAC 3 cut(s) 2559, 2652, 2763
BstX2I RGATCY 6 cut(s) 974, 3151, 3652, 3766, 4452, 4815
BstYI RGATCY 6 cut(s) 974, 3151, 3652, 3766, 4452, 4815
BstZ17I GTATAC 1 cut(s) 1889
Bsu15I ATCGAT 2 cut(s) 1651, 3476
Bsu36I CCTNAGG 1 cut(s) 4413
BsuI GTATCC 2 cut(s) 2058, 4570
BsuRI GGCC 6 cut(s) 589, 1186, 2445, 2586, 2748, 3523
BsuTUI ATCGAT 2 cut(s) 1651, 3476
BtgZI GCGATG 2 cut(s) 2176, 5071
BtrI CACGTC 1 cut(s) 2458
BtsI GCAGTG 2 cut(s) 2551, 5051
BtsIMutI CAGTG 6 cut(s) 859, 2218, 2551, 2563, 4826, 5051
BveI ACCTGC 5 cut(s) 1185, 2362, 4132, 4267, 5145
CaiI CAGNNNCTG 1 cut(s) 3227
CciI TCATGA 3 cut(s) 234, 1066, 3751
CfoI GCGC 3 cut(s) 1174, 3993, 4549
Cfr13I GGNCC 6 cut(s) 2111, 2223, 2241, 3522, 4734, 5166
Cfr9I CCCGGG 1 cut(s) 4362
ClaI ATCGAT 2 cut(s) 1651, 3476
CsiI ACCWGGT 1 cut(s) 1997
Csp6I GTAC 6 cut(s) 206, 907, 1995, 2435, 3674, 4137
CviQI GTAC 6 cut(s) 206, 907, 1995, 2435, 3674, 4137
DraI TTTAAA 2 cut(s) 1498, 2388
EaeI YGGCCR 2 cut(s) 2584, 2746
Eam1104I CTCTTC 7 cut(s) 125, 2193, 2490, 2910, 3169, 3321, 4566
EarI CTCTTC 7 cut(s) 125, 2193, 2490, 2910, 3169, 3321, 4566
EciI GGCGGA 1 cut(s) 5158
Ecl136II GAGCTC 2 cut(s) 267, 1262
Eco130I CCWWGG 4 cut(s) 369, 442, 2612, 4480
Eco24I GRGCYC 2 cut(s) 269, 1264
Eco31I GGTCTC 2 cut(s) 2785, 3493
Eco32I GATATC 1 cut(s) 4674
Eco47I GGWCC 5 cut(s) 2111, 2223, 2241, 4734, 5166
Eco53kI GAGCTC 2 cut(s) 267, 1262
Eco57I CTGAAG 4 cut(s) 106, 1940, 2891, 4268
Eco72I CACGTG 1 cut(s) 3461
Eco81I CCTNAGG 1 cut(s) 4413
Eco88I CYCGRG 3 cut(s) 2231, 4362, 4520
Eco91I GGTNACC 1 cut(s) 1347
EcoICRI GAGCTC 2 cut(s) 267, 1262
EcoO109I RGGNCCY 3 cut(s) 2111, 3522, 4734
EcoO65I GGTNACC 1 cut(s) 1347
EcoRI GAATTC 4 cut(s) 2915, 3250, 3914, 4679
EcoRII CCWGG 6 cut(s) 924, 1997, 2039, 2563, 2842, 3276
EcoRV GATATC 1 cut(s) 4674
EcoT14I CCWWGG 4 cut(s) 369, 442, 2612, 4480
EcoT22I ATGCAT 1 cut(s) 5063
EcoT38I GRGCYC 2 cut(s) 269, 1264
ErhI CCWWGG 4 cut(s) 369, 442, 2612, 4480
Esp3I CGTCTC 2 cut(s) 3036, 5187
FaqI GGGAC 8 cut(s) 419, 708, 942, 2100, 2180, 2300, 2954, 4345
FauI CCCGC 5 cut(s) 1760, 2132, 3781, 4416, 5001
FauNDI CATATG 2 cut(s) 1127, 2319
FbaI TGATCA 2 cut(s) 567, 1201
FblI GTMKAC 3 cut(s) 484, 1888, 5047
Fnu4HI GCNGC 9 cut(s) 115, 294, 715, 1061, 2336, 2808, 3303, 3777, 3780
FriOI GRGCYC 2 cut(s) 269, 1264
Fsp4HI GCNGC 9 cut(s) 115, 294, 715, 1061, 2336, 2808, 3303, 3777, 3780
FspBI CTAG 6 cut(s) 524, 591, 2108, 2775, 3306, 3618
FspI TGCGCA 1 cut(s) 1173
GlaI GCGC 3 cut(s) 1173, 3992, 4548
GluI GCNGC 9 cut(s) 115, 294, 715, 1061, 2336, 2808, 3303, 3777, 3780
GsaI CCCAGC 2 cut(s) 615, 2800
GsuI CTGGAG 1 cut(s) 3105
HaeII RGCGCY 1 cut(s) 4550
HaeIII GGCC 6 cut(s) 589, 1186, 2445, 2586, 2748, 3523
HapII CCGG 4 cut(s) 98, 1508, 4363, 4777
HhaI GCGC 3 cut(s) 1174, 3993, 4549
Hin6I GCGC 3 cut(s) 1172, 3991, 4547
HinP1I GCGC 3 cut(s) 1172, 3991, 4547
HincII GTYRAC 2 cut(s) 3181, 4782
HindII GTYRAC 2 cut(s) 3181, 4782
HindIII AAGCTT 2 cut(s) 642, 5247
HpaI GTTAAC 1 cut(s) 4782
HpaII CCGG 4 cut(s) 98, 1508, 4363, 4777
HphI GGTGA 5 cut(s) 1341, 1715, 2543, 4156, 4364
Hpy99I CGWCG 4 cut(s) 201, 1634, 2595, 4915
HspAI GCGC 3 cut(s) 1172, 3991, 4547
Ksp22I TGATCA 2 cut(s) 567, 1201
KspAI GTTAAC 1 cut(s) 4782
LguI GCTCTTC 1 cut(s) 2193
LmnI GCTCC 4 cut(s) 1267, 3094, 3928, 4174
Lsp1109I GCAGC 9 cut(s) 126, 305, 726, 1047, 2322, 2819, 3314, 3766, 3788
MabI ACCWGGT 1 cut(s) 1997
MaeI CTAG 6 cut(s) 524, 591, 2108, 2775, 3306, 3618
MaeIII GTNAC 8 cut(s) 961, 1347, 1975, 2297, 3115, 4242, 4316, 5083
MfeI CAATTG 2 cut(s) 654, 5144
MflI RGATCY 6 cut(s) 974, 3151, 3652, 3766, 4452, 4815
MhlI GDGCHC 4 cut(s) 269, 1264, 3566, 4164
MlsI TGGCCA 2 cut(s) 2586, 2748
MluI ACGCGT 1 cut(s) 222
MluNI TGGCCA 2 cut(s) 2586, 2748
MlyI GAGTC 5 cut(s) 68, 2666, 2909, 3297, 3836
MmeI TCCRAC 3 cut(s) 674, 4366, 4893
Mox20I TGGCCA 2 cut(s) 2586, 2748
Mph1103I ATGCAT 1 cut(s) 5063
MroXI GAANNNNTTC 4 cut(s) 23, 43, 743, 4073
MscI TGGCCA 2 cut(s) 2586, 2748
Msp20I TGGCCA 2 cut(s) 2586, 2748
MspA1I CMGCKG 2 cut(s) 2335, 3779
MspCI CTTAAG 1 cut(s) 1441
MspI CCGG 4 cut(s) 98, 1508, 4363, 4777
MspR9I CCNGG 9 cut(s) 926, 1999, 2041, 2565, 2844, 3278, 4363, 4364, 4777
MunI CAATTG 2 cut(s) 654, 5144
Mva1269I GAATGC 4 cut(s) 716, 2386, 3993, 4943
MvaI CCWGG 6 cut(s) 926, 1999, 2041, 2565, 2844, 3278
MvnI CGCG 2 cut(s) 224, 2706
NciI CCSGG 3 cut(s) 4363, 4364, 4777
NdeI CATATG 2 cut(s) 1127, 2319
NlaIV GGNNCC 8 cut(s) 746, 1106, 1512, 2225, 3090, 3153, 3654, 4817
NmuCI GTSAC 5 cut(s) 1347, 1975, 2297, 3115, 4316
NsbI TGCGCA 1 cut(s) 1173
NsiI ATGCAT 1 cut(s) 5063
NspI RCATGY 4 cut(s) 1195, 1908, 2814, 3055
NspV TTCGAA 3 cut(s) 344, 1832, 4976
OliI CACNNNNGTG 1 cut(s) 5132
PaeI GCATGC 3 cut(s) 1195, 2814, 3055
PaeR7I CTCGAG 2 cut(s) 2231, 4520
PagI TCATGA 3 cut(s) 234, 1066, 3751
PaqCI CACCTGC 3 cut(s) 1185, 4132, 5145
PciI ACATGT 1 cut(s) 1904
PciSI GCTCTTC 1 cut(s) 2193
PcsI WCGNNNNNNNCGW 2 cut(s) 205, 2454
PctI GAATGC 4 cut(s) 716, 2386, 3993, 4943
PdmI GAANNNNTTC 4 cut(s) 23, 43, 743, 4073
PkrI GCNGC 9 cut(s) 116, 295, 716, 1062, 2337, 2809, 3304, 3778, 3781
Ple19I CGATCG 2 cut(s) 1655, 3476
PleI GAGTC 5 cut(s) 67, 2665, 2908, 3296, 3836
PmaCI CACGTG 1 cut(s) 3461
PmlI CACGTG 1 cut(s) 3461
PpsI GAGTC 5 cut(s) 67, 2665, 2908, 3296, 3836
Ppu21I YACGTR 3 cut(s) 3461, 3797, 4196
PpuMI RGGWCCY 2 cut(s) 2111, 4734
PscI ACATGT 1 cut(s) 1904
PshBI ATTAAT 2 cut(s) 4095, 5025
PsiI TTATAA 1 cut(s) 4280
Psp124BI GAGCTC 2 cut(s) 269, 1264
Psp5II RGGWCCY 2 cut(s) 2111, 4734
Psp6I CCWGG 6 cut(s) 924, 1997, 2039, 2563, 2842, 3276
PspCI CACGTG 1 cut(s) 3461
PspEI GGTNACC 1 cut(s) 1347
PspFI CCCAGC 2 cut(s) 611, 2796
PspGI CCWGG 6 cut(s) 924, 1997, 2039, 2563, 2842, 3276
PspN4I GGNNCC 8 cut(s) 746, 1106, 1512, 2225, 3090, 3153, 3654, 4817
PspPI GGNCC 6 cut(s) 2111, 2223, 2241, 3522, 4734, 5166
PspPPI RGGWCCY 2 cut(s) 2111, 4734
PspXI VCTCGAGB 1 cut(s) 2231
PsrI GAACNNNNNNTAC 2 cut(s) 2403, 2435
PstI CTGCAG 2 cut(s) 2546, 4545
PstNI CAGNNNCTG 1 cut(s) 3227
PsuI RGATCY 6 cut(s) 974, 3151, 3652, 3766, 4452, 4815
PvuI CGATCG 2 cut(s) 1655, 3476
PvuII CAGCTG 2 cut(s) 2335, 3779
RsaI GTAC 6 cut(s) 207, 908, 1996, 2436, 3675, 4138
RsaNI GTAC 6 cut(s) 206, 907, 1995, 2435, 3674, 4137
SacI GAGCTC 2 cut(s) 269, 1264
SapI GCTCTTC 1 cut(s) 2193
SatI GCNGC 9 cut(s) 115, 294, 715, 1061, 2336, 2808, 3303, 3777, 3780
Sau96I GGNCC 6 cut(s) 2111, 2223, 2241, 3522, 4734, 5166
SbfI CCTGCAGG 1 cut(s) 4545
SchI GAGTC 5 cut(s) 68, 2666, 2909, 3297, 3836
ScrFI CCNGG 9 cut(s) 926, 1999, 2041, 2565, 2844, 3278, 4363, 4364, 4777
SdaI CCTGCAGG 1 cut(s) 4545
SduI GDGCHC 4 cut(s) 269, 1264, 3566, 4164
SexAI ACCWGGT 1 cut(s) 1997
SfcI CTRYAG 4 cut(s) 1340, 2542, 2853, 4541
Sfr274I CTCGAG 2 cut(s) 2231, 4520
SfuI TTCGAA 3 cut(s) 344, 1832, 4976
SinI GGWCC 5 cut(s) 2111, 2223, 2241, 4734, 5166
SlaI CTCGAG 2 cut(s) 2231, 4520
SmaI CCCGGG 1 cut(s) 4364
SmlI CTYRAG 5 cut(s) 1441, 2231, 4163, 4520, 5068
SmoI CTYRAG 5 cut(s) 1441, 2231, 4163, 4520, 5068
SphI GCATGC 3 cut(s) 1195, 2814, 3055
Sse8387I CCTGCAGG 1 cut(s) 4545
SsiI CCGC 9 cut(s) 1753, 2125, 3267, 3774, 4409, 4450, 4661, 4994, 5169
SspI AATATT 1 cut(s) 2512
SspMI CTAG 6 cut(s) 524, 591, 2108, 2775, 3306, 3618
SstI GAGCTC 2 cut(s) 269, 1264
StyD4I CCNGG 9 cut(s) 924, 1997, 2039, 2563, 2842, 3276, 4361, 4362, 4775
StyI CCWWGG 4 cut(s) 369, 442, 2612, 4480
TaqII GACCGA 2 cut(s) 1643, 1723
TatI WGTACW 1 cut(s) 2434
TscAI CASTG 6 cut(s) 859, 2225, 2551, 2563, 4826, 5058
TseFI GTSAC 5 cut(s) 1347, 1975, 2297, 3115, 4316
TseI GCWGC 9 cut(s) 114, 293, 714, 1060, 2335, 2807, 3302, 3776, 3779
Tsp45I GTSAC 5 cut(s) 1347, 1975, 2297, 3115, 4316
TspGWI ACGGA 3 cut(s) 3691, 3847, 5137
TspMI CCCGGG 1 cut(s) 4362
TspRI CASTG 6 cut(s) 859, 2225, 2551, 2563, 4826, 5058
Vha464I CTTAAG 1 cut(s) 1441
VpaK11BI GGWCC 5 cut(s) 2111, 2223, 2241, 4734, 5166
VspI ATTAAT 2 cut(s) 4095, 5025
XbaI TCTAGA 2 cut(s) 2774, 3617
XceI RCATGY 4 cut(s) 1195, 1908, 2814, 3055
XhoI CTCGAG 2 cut(s) 2231, 4520
XmaI CCCGGG 1 cut(s) 4362
XmiI GTMKAC 3 cut(s) 484, 1888, 5047
XmnI GAANNNNTTC 4 cut(s) 23, 43, 743, 4073
XspI CTAG 6 cut(s) 524, 591, 2108, 2775, 3306, 3618
Zsp2I ATGCAT 1 cut(s) 5063
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.