Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0007947

Physical Location & Seq

Genomic Coordinates Reverse (-)

22506679 .. 22508365

Gene Structure 1687 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G271700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1041 bp

ATGGCAGGAGGCAAAACAAAGAAAGAGAAGGCGAGGCCAGCAGGGCACACGCCCTACCAAGGAGGCATATCATTCCACAAGTCCAAAGGACAGCACATCCTCAAGAATCCGTTACTGGTGGATTCCATAGTCCAGAAGTCAGGGATCAAATCCACCGATGTCATCCTAGAGATTGGTCCTGGTACTGGTAATCTCACCAAGAAGCTTCTAGAAGTTGGTAAGAGGGTCATCGCCGTCGAGATTGACGCTCGCATGGTCCTCGAGCTGCAGAGACGATTTCAGGGCACTCCTCTCTCCAGCCGCTTGCAGGTTATTCAAGGAGATGTGCTAAAGACTGAACTTCCCTATTTTGATATATGCGTGGCAAATATCCCTTATCAAATCTCATCTCCCCTCACATTCAAGTTATTGAAGCACCAACCTGCTTTCAGATGTGCCATTATAATGTTCCAAAGGGAATTTGCAATGAGACTGGTTGCGCAGCCTGGTGACAAGCTCTACTGCCGTCTTACAGTCAACACGCAACTCTTGTCTCGGGTCTCCCATCTACTCAAAGTTGGAAGGAACAACTTTCGCCCTCCGCCTAAGGTAGATTCCTCTGTCGTTCGAATTGAACCCAGGAAACCACCTTTTGAAGTGAACCAAAAGGAGTGGGATGGCTTTTTGCGGATCTGTTTCAATAGGAAGAACAAAACGCTTGGCTCAATTTTTAGACAGAAAAGTGTCATCAATTTGCTAGAGAAGAATTACAAGACCTTGCAGGCGCTTAATCTTGCACCAGCCCAACAAGGTGCCTTGGAGGATACTAATGACGTGATGGATTTTTCAGATGAGGACATAGAGATGAATGATGATGGAGTGGATGATGGAATGGAGGTGGAGGATGGTAATGCAGAAGGGGAGGTATCTGAATTCAAAAAAAAGGTTTTGAGTGTGTTGATGAAGGCAGGTTTTGAAGGGGAGAGGTCCTCGAAGCTCAAATTACAGCAATTCTTGGACCTACTTTCTGAGTTCAATAAGGATGGTATACACTTCTCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000154 GO:0000179 GO:0001510 GO:0001708 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005739 GO:0005759 GO:0005829 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008173 GO:0008649 GO:0008757 GO:0009451 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010604 GO:0010628 GO:0016070 GO:0016072 GO:0016433 GO:0016740 GO:0016741 GO:0019219 GO:0019222 GO:0022613 GO:0030154 GO:0031167 GO:0031323 GO:0031325 GO:0031974 GO:0031981 GO:0032259 GO:0032502 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043414 GO:0044085 GO:0044087 GO:0044089 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0045165 GO:0045935 GO:0046483 GO:0048518 GO:0048522 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051301 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0090069 GO:0090070 GO:0090304 GO:0140098 GO:0140102 GO:1901360 GO:2000232 GO:2000234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RrnaAD

Protein Analysis

347

Amino Acids

38.91

Weight (kDa)

9.24

Isoelectric Point (pI)

33.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007947)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47420
fragaria_vesca	FvH4_5g39320 FvH4_5g39320 FvH4_5g39320 FvH4_5g39320 FvH4_5g39320
malus_domestica	MD01G1012800.v1.1 MD11G1314900.v1.1
prunus_persica	Prupe.1G563800_v2.0.a1 Prupe.8G271700_v2.0.a1
pyrus_communis	pycom01g04480 pycom03g23390 pycom11g27510
rosa_chinensis	RchiOBHm_Chr7g0241601
rosa_laevigata	RLG00000000562
rosa_multiflora	Rmu_sc0002268.1_g000014 Rmu_sc0014556.1_g000002
rosa_roxburghii	Rroxscaffold_3G00218890
rosa_rugosa	Rorug07G0345600
rosa_samantha	Rh7AG500000 Rh7BG471100 Rh7CG516400 Rh7DG485000
rosa_wichuraiana	Rw7G042230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	443
Acc16I	TGCGCA	1 cut(s)	480
Acc36I	ACCTGC	3 cut(s)	298, 430, 938
AccB1I	GGYRCC	1 cut(s)	791
AccI	GTMKAC	1 cut(s)	1027
AciI	CCGC	3 cut(s)	301, 581, 667
AclWI	GGATC	2 cut(s)	152, 677
AcsI	RAATTY	2 cut(s)	458, 911
AfaI	GTAC	1 cut(s)	184
AfiI	CCNNNNNNNGG	3 cut(s)	59, 185, 307
AgsI	TTSAA	9 cut(s)	317, 403, 412, 614, 635, 679, 916, 956, 1015
AjiI	CACGTC	1 cut(s)	814
AjnI	CCWGG	3 cut(s)	178, 484, 617
AluBI	AGCT	4 cut(s)	205, 265, 496, 976
AluI	AGCT	4 cut(s)	205, 265, 496, 976
Alw26I	GTCTC	4 cut(s)	265, 463, 537, 544
AlwI	GGATC	2 cut(s)	152, 677
Ama87I	CYCGRG	2 cut(s)	260, 534
AoxI	GGCC	1 cut(s)	35
ApeKI	GCWGC	2 cut(s)	265, 481
ApoI	RAATTY	2 cut(s)	458, 911
AspLEI	GCGC	2 cut(s)	481, 766
AspS9I	GGNCC	4 cut(s)	176, 256, 966, 997
AsuHPI	GGTGA	2 cut(s)	187, 500
AsuII	TTCGAA	1 cut(s)	607
AvaI	CYCGRG	2 cut(s)	260, 534
AvaII	GGWCC	4 cut(s)	176, 256, 966, 997
AxyI	CCTNAGG	1 cut(s)	585
BaeGI	GKGCMC	2 cut(s)	48, 287
BanI	GGYRCC	1 cut(s)	791
BbvI	GCAGC	2 cut(s)	252, 493
BccI	CCATC	7 cut(s)	552, 650, 811, 848, 860, 878, 1016
BceAI	ACGGC	2 cut(s)	218, 489
BcgI	CGANNNNNNTGC	2 cut(s)	241, 275
BciT130I	CCWGG	3 cut(s)	180, 486, 619
BciVI	GTATCC	1 cut(s)	796
BcoDI	GTCTC	4 cut(s)	265, 463, 537, 544
BfaI	CTAG	3 cut(s)	167, 209, 737
BfmI	CTRYAG	1 cut(s)	266
BfoI	RGCGCY	1 cut(s)	767
BfuAI	ACCTGC	3 cut(s)	298, 430, 938
BfuI	GTATCC	1 cut(s)	796
BglI	GCCNNNNNGGC	1 cut(s)	43
BisI	GCNGC	3 cut(s)	266, 301, 482
BlsI	GCNGC	3 cut(s)	267, 302, 483
Bme1390I	CCNGG	3 cut(s)	180, 486, 619
Bme18I	GGWCC	4 cut(s)	176, 256, 966, 997
BmeT110I	CYCGRG	2 cut(s)	260, 534
BmgBI	CACGTC	1 cut(s)	814
BmgT120I	GGNCC	4 cut(s)	176, 256, 966, 997
BmiI	GGNNCC	1 cut(s)	793
BmrFI	CCNGG	3 cut(s)	180, 486, 619
BplI	GAGNNNNNCTC	2 cut(s)	953, 985
BpmI	CTGGAG	1 cut(s)	280
Bpu14I	TTCGAA	1 cut(s)	607
BpuEI	CTTGAG	1 cut(s)	86
BsaI	GGTCTC	1 cut(s)	544
BsaJI	CCNNGG	3 cut(s)	58, 617, 795
Bsc4I	CCNNNNNNNGG	3 cut(s)	59, 185, 307
Bse1I	ACTGG	3 cut(s)	120, 190, 477
Bse21I	CCTNAGG	1 cut(s)	585
Bse3DI	GCAATG	1 cut(s)	471
BseBI	CCWGG	3 cut(s)	180, 486, 619
BseDI	CCNNGG	3 cut(s)	58, 617, 795
BseGI	GGATG	6 cut(s)	96, 162, 661, 868, 889, 1027
BseLI	CCNNNNNNNGG	3 cut(s)	59, 185, 307
BseMI	GCAATG	1 cut(s)	471
BseMII	CTCAG	1 cut(s)	999
BseNI	ACTGG	3 cut(s)	120, 190, 477
BseRI	GAGGAG	1 cut(s)	279
BseSI	GKGCMC	2 cut(s)	48, 287
BseXI	GCAGC	2 cut(s)	252, 493
BshFI	GGCC	1 cut(s)	37
BshNI	GGYRCC	1 cut(s)	791
BsiHKCI	CYCGRG	2 cut(s)	260, 534
BslI	CCNNNNNNNGG	3 cut(s)	59, 185, 307
BsmAI	GTCTC	4 cut(s)	265, 463, 537, 544
BsmBI	CGTCTC	1 cut(s)	265
BsnI	GGCC	1 cut(s)	37
Bso31I	GGTCTC	1 cut(s)	544
BsoBI	CYCGRG	2 cut(s)	260, 534
Bsp119I	TTCGAA	1 cut(s)	607
Bsp1286I	GDGCHC	2 cut(s)	48, 287
Bsp143I	GATC	2 cut(s)	144, 669
BspACI	CCGC	3 cut(s)	301, 581, 667
BspANI	GGCC	1 cut(s)	37
BspCNI	CTCAG	1 cut(s)	1000
BspLI	GGNNCC	1 cut(s)	793
BspMAI	CTGCAG	1 cut(s)	270
BspMI	ACCTGC	3 cut(s)	298, 430, 938
BspPI	GGATC	2 cut(s)	152, 677
BspT104I	TTCGAA	1 cut(s)	607
BspT107I	GGYRCC	1 cut(s)	791
BspTNI	GGTCTC	1 cut(s)	544
BsrDI	GCAATG	1 cut(s)	471
BsrI	ACTGG	3 cut(s)	120, 190, 477
BssECI	CCNNGG	3 cut(s)	58, 617, 795
BssMI	GATC	2 cut(s)	144, 669
BssNAI	GTATAC	1 cut(s)	1028
BssT1I	CCWWGG	2 cut(s)	58, 795
Bst1107I	GTATAC	1 cut(s)	1028
Bst2UI	CCWGG	3 cut(s)	180, 486, 619
Bst4CI	ACNGT	1 cut(s)	514
BstBI	TTCGAA	1 cut(s)	607
BstC8I	GCNNGC	4 cut(s)	39, 250, 305, 762
BstDEI	CTNAG	2 cut(s)	585, 1008
BstF5I	GGATG	6 cut(s)	96, 162, 661, 868, 889, 1027
BstH2I	RGCGCY	1 cut(s)	767
BstHHI	GCGC	2 cut(s)	481, 766
BstKTI	GATC	2 cut(s)	147, 672
BstMAI	GTCTC	4 cut(s)	265, 463, 537, 544
BstMBI	GATC	2 cut(s)	144, 669
BstMWI	GCNNNNNNNGC	2 cut(s)	38, 43
BstNI	CCWGG	3 cut(s)	180, 486, 619
BstSCI	CCNGG	3 cut(s)	178, 484, 617
BstSFI	CTRYAG	1 cut(s)	266
BstSLI	GKGCMC	2 cut(s)	48, 287
BstV1I	GCAGC	2 cut(s)	252, 493
BstX2I	RGATCY	1 cut(s)	669
BstYI	RGATCY	1 cut(s)	669
BstZ17I	GTATAC	1 cut(s)	1028
Bsu36I	CCTNAGG	1 cut(s)	585
BsuI	GTATCC	1 cut(s)	796
BsuRI	GGCC	1 cut(s)	37
BtgZI	GCGATG	1 cut(s)	214
BtrI	CACGTC	1 cut(s)	814
BtsCI	GGATG	6 cut(s)	96, 162, 661, 868, 889, 1027
BveI	ACCTGC	3 cut(s)	298, 430, 938
Cac8I	GCNNGC	4 cut(s)	39, 250, 305, 762
CfoI	GCGC	2 cut(s)	481, 766
Cfr13I	GGNCC	4 cut(s)	176, 256, 966, 997
CseI	GACGC	1 cut(s)	254
Csp6I	GTAC	1 cut(s)	183
CspCI	CAANNNNNGTGG	2 cut(s)	632, 667
CviAII	CATG	1 cut(s)	253
CviQI	GTAC	1 cut(s)	183
DdeI	CTNAG	2 cut(s)	585, 1008
DpnI	GATC	2 cut(s)	146, 671
DpnII	GATC	2 cut(s)	144, 669
EciI	GGCGGA	1 cut(s)	570
Eco130I	CCWWGG	2 cut(s)	58, 795
Eco31I	GGTCTC	1 cut(s)	544
Eco47I	GGWCC	4 cut(s)	176, 256, 966, 997
Eco81I	CCTNAGG	1 cut(s)	585
Eco88I	CYCGRG	2 cut(s)	260, 534
EcoO109I	RGGNCCY	1 cut(s)	966
EcoRI	GAATTC	1 cut(s)	911
EcoRII	CCWGG	3 cut(s)	178, 484, 617
EcoT14I	CCWWGG	2 cut(s)	58, 795
ErhI	CCWWGG	2 cut(s)	58, 795
Esp3I	CGTCTC	1 cut(s)	265
FaeI	CATG	1 cut(s)	256
FaiI	YATR	8 cut(s)	68, 128, 254, 356, 358, 443, 839, 1028
FatI	CATG	1 cut(s)	252
FblI	GTMKAC	1 cut(s)	1027
Fnu4HI	GCNGC	3 cut(s)	266, 301, 482
FokI	GGATG	6 cut(s)	83, 149, 668, 875, 896, 1034
Fsp4HI	GCNGC	3 cut(s)	266, 301, 482
FspBI	CTAG	3 cut(s)	167, 209, 737
FspI	TGCGCA	1 cut(s)	480
GlaI	GCGC	2 cut(s)	480, 765
GluI	GCNGC	3 cut(s)	266, 301, 482
GsuI	CTGGAG	1 cut(s)	280
HaeII	RGCGCY	1 cut(s)	767
HaeIII	GGCC	1 cut(s)	37
HgaI	GACGC	1 cut(s)	254
HhaI	GCGC	2 cut(s)	481, 766
Hin1II	CATG	1 cut(s)	256
Hin6I	GCGC	2 cut(s)	479, 764
HinP1I	GCGC	2 cut(s)	479, 764
HincII	GTYRAC	1 cut(s)	517
HindII	GTYRAC	1 cut(s)	517
HindIII	AAGCTT	1 cut(s)	203
HinfI	GANTC	3 cut(s)	106, 122, 593
HphI	GGTGA	2 cut(s)	187, 500
Hpy166II	GTNNAC	3 cut(s)	517, 640, 1028
Hpy188I	TCNGA	4 cut(s)	431, 829, 910, 1009
Hpy188III	TCNNGA	4 cut(s)	103, 133, 209, 238
Hpy8I	GTNNAC	3 cut(s)	517, 640, 1028
Hpy99I	CGWCG	1 cut(s)	239
HpyAV	CCTTC	5 cut(s)	22, 555, 890, 937, 950
HpyCH4III	ACNGT	1 cut(s)	514
HpyCH4IV	ACGT	1 cut(s)	813
HpyCH4V	TGCA	6 cut(s)	268, 307, 464, 760, 776, 893
HpyF10VI	GCNNNNNNNGC	2 cut(s)	38, 43
HpyF3I	CTNAG	2 cut(s)	585, 1008
HpySE526I	ACGT	1 cut(s)	813
Hsp92II	CATG	1 cut(s)	256
HspAI	GCGC	2 cut(s)	479, 764
Kzo9I	GATC	2 cut(s)	144, 669
Lsp1109I	GCAGC	2 cut(s)	252, 493
MaeI	CTAG	3 cut(s)	167, 209, 737
MaeII	ACGT	1 cut(s)	813
MaeIII	GTNAC	2 cut(s)	111, 488
MalI	GATC	2 cut(s)	146, 671
MboI	GATC	2 cut(s)	144, 669
MboII	GAAGA	2 cut(s)	697, 754
MflI	RGATCY	1 cut(s)	669
MhlI	GDGCHC	2 cut(s)	48, 287
MluCI	AATT	8 cut(s)	458, 609, 705, 730, 745, 911, 980, 989
MmeI	TCCRAC	1 cut(s)	538
MseI	TTAA	1 cut(s)	768
MslI	CAYNNNNRTG	2 cut(s)	443, 842
MspR9I	CCNGG	3 cut(s)	180, 486, 619
MvaI	CCWGG	3 cut(s)	180, 486, 619
MwoI	GCNNNNNNNGC	2 cut(s)	38, 43
NdeII	GATC	2 cut(s)	144, 669
NlaIII	CATG	1 cut(s)	256
NlaIV	GGNNCC	1 cut(s)	793
NmuCI	GTSAC	1 cut(s)	488
NsbI	TGCGCA	1 cut(s)	480
NspV	TTCGAA	1 cut(s)	607
PaeR7I	CTCGAG	1 cut(s)	260
PfeI	GAWTC	3 cut(s)	106, 122, 593
PkrI	GCNGC	3 cut(s)	267, 302, 483
PpuMI	RGGWCCY	1 cut(s)	966
PsiI	TTATAA	1 cut(s)	443
Psp5II	RGGWCCY	1 cut(s)	966
Psp6I	CCWGG	3 cut(s)	178, 484, 617
PspGI	CCWGG	3 cut(s)	178, 484, 617
PspN4I	GGNNCC	1 cut(s)	793
PspPI	GGNCC	4 cut(s)	176, 256, 966, 997
PspPPI	RGGWCCY	1 cut(s)	966
PspXI	VCTCGAGB	1 cut(s)	260
PstI	CTGCAG	1 cut(s)	270
PsuI	RGATCY	1 cut(s)	669
RsaI	GTAC	1 cut(s)	184
RsaNI	GTAC	1 cut(s)	183
RseI	CAYNNNNRTG	2 cut(s)	443, 842
SaqAI	TTAA	1 cut(s)	768
SatI	GCNGC	3 cut(s)	266, 301, 482
Sau3AI	GATC	2 cut(s)	144, 669
Sau96I	GGNCC	4 cut(s)	176, 256, 966, 997
ScrFI	CCNGG	3 cut(s)	180, 486, 619
SduI	GDGCHC	2 cut(s)	48, 287
SfcI	CTRYAG	1 cut(s)	266
Sfr274I	CTCGAG	1 cut(s)	260
SfuI	TTCGAA	1 cut(s)	607
SinI	GGWCC	4 cut(s)	176, 256, 966, 997
SlaI	CTCGAG	1 cut(s)	260
SmiMI	CAYNNNNRTG	2 cut(s)	443, 842
SmlI	CTYRAG	2 cut(s)	101, 260
SmoI	CTYRAG	2 cut(s)	101, 260
Sse9I	AATT	8 cut(s)	458, 609, 705, 730, 745, 911, 980, 989
SsiI	CCGC	3 cut(s)	301, 581, 667
SspMI	CTAG	3 cut(s)	167, 209, 737
StyD4I	CCNGG	3 cut(s)	178, 484, 617
StyI	CCWWGG	2 cut(s)	58, 795
TaaI	ACNGT	1 cut(s)	514
TaiI	ACGT	1 cut(s)	816
TaqI	TCGA	4 cut(s)	237, 261, 607, 971
TasI	AATT	8 cut(s)	458, 609, 705, 730, 745, 911, 980, 989
TauI	GCSGC	1 cut(s)	303
TfiI	GAWTC	3 cut(s)	106, 122, 593
Tru1I	TTAA	1 cut(s)	768
Tru9I	TTAA	1 cut(s)	768
TseFI	GTSAC	1 cut(s)	488
TseI	GCWGC	2 cut(s)	265, 481
Tsp45I	GTSAC	1 cut(s)	488
TspDTI	ATGAA	2 cut(s)	860, 956
TspGWI	ACGGA	1 cut(s)	99
VpaK11BI	GGWCC	4 cut(s)	176, 256, 966, 997
XapI	RAATTY	2 cut(s)	458, 911
XbaI	TCTAGA	1 cut(s)	208
XhoI	CTCGAG	1 cut(s)	260
XmiI	GTMKAC	1 cut(s)	1027
XspI	CTAG	3 cut(s)	167, 209, 737

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.