Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0007947

Physical Location & Seq

Genomic Coordinates Forward (+)

38393398 .. 38393800

Gene Structure 403 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0345600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 255 bp

ATGTATTCAGCCGCCCCTCTTCCACTGGCGCATGCTCATGTGGCATCATCATCAGAGAAGGCGAAAAATGATGCAATGAAGAACGTGGCATGTGTGGCTGAGCTTCTGGTTGAAGCAGTGAATGGTGGGGTGAAGGAGTTGTTTATAAACGAGAAGCGAATTGAGCTTGAAATCCAAGCATTGGCTGCCACCATTTCGCGCTTCATCAAGCAGACTGATAAGTGGTTATCAGTCGCACACATCTCAGAGGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000154 GO:0000179 GO:0001510 GO:0001708 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005739 GO:0005759 GO:0005829 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008173 GO:0008649 GO:0008757 GO:0009451 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010604 GO:0010628 GO:0016070 GO:0016072 GO:0016433 GO:0016740 GO:0016741 GO:0019219 GO:0019222 GO:0022613 GO:0030154 GO:0031167 GO:0031323 GO:0031325 GO:0031974 GO:0031981 GO:0032259 GO:0032502 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043414 GO:0044085 GO:0044087 GO:0044089 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0045165 GO:0045935 GO:0046483 GO:0048518 GO:0048522 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051301 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0090069 GO:0090070 GO:0090304 GO:0140098 GO:0140102 GO:1901360 GO:2000232 GO:2000234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RrnaAD

Protein Analysis

84

Amino Acids

9.15

Weight (kDa)

5.89

Isoelectric Point (pI)

52.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GCN5L1	PF06320	13 - 80	7e-16	GCN5-like protein 1 (GCN5L1)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007947)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47420
fragaria_vesca	FvH4_5g39320 FvH4_5g39320 FvH4_5g39320 FvH4_5g39320 FvH4_5g39320
malus_domestica	MD01G1012800.v1.1 MD11G1314900.v1.1
prunus_persica	Prupe.1G563800_v2.0.a1 Prupe.8G271700_v2.0.a1
pyrus_communis	pycom01g04480 pycom03g23390 pycom11g27510
rosa_chinensis	RchiOBHm_Chr7g0241601
rosa_laevigata	RLG00000000562
rosa_multiflora	Rmu_sc0002268.1_g000014 Rmu_sc0014556.1_g000002
rosa_roxburghii	Rroxscaffold_3G00218890
rosa_rugosa	Rorug07G0345600
rosa_samantha	Rh7AG500000 Rh7BG471100 Rh7CG516400 Rh7DG485000
rosa_wichuraiana	Rw7G042230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	146
AccB7I	CCANNNNNTGG	1 cut(s)	181
AccII	CGCG	1 cut(s)	199
AciI	CCGC	1 cut(s)	12
AfiI	CCNNNNNNNGG	1 cut(s)	181
AgsI	TTSAA	2 cut(s)	113, 170
AluBI	AGCT	2 cut(s)	103, 166
AluI	AGCT	2 cut(s)	103, 166
ApeKI	GCWGC	1 cut(s)	185
AspLEI	GCGC	2 cut(s)	31, 201
AsuHPI	GGTGA	1 cut(s)	142
BbvI	GCAGC	1 cut(s)	172
BisI	GCNGC	2 cut(s)	12, 186
BlpI	GCTNAGC	1 cut(s)	99
BlsI	GCNGC	2 cut(s)	13, 187
BmsI	GCATC	2 cut(s)	53, 61
Bpu1102I	GCTNAGC	1 cut(s)	99
Bsc4I	CCNNNNNNNGG	1 cut(s)	181
Bse1I	ACTGG	1 cut(s)	30
Bse3DI	GCAATG	1 cut(s)	81
BseLI	CCNNNNNNNGG	1 cut(s)	181
BseMI	GCAATG	1 cut(s)	81
BseMII	CTCAG	1 cut(s)	90
BseNI	ACTGG	1 cut(s)	30
BseXI	GCAGC	1 cut(s)	172
Bsh1236I	CGCG	1 cut(s)	199
BslI	CCNNNNNNNGG	1 cut(s)	181
Bsp1720I	GCTNAGC	1 cut(s)	99
BspACI	CCGC	1 cut(s)	12
BspCNI	CTCAG	1 cut(s)	91
BspFNI	CGCG	1 cut(s)	199
BsrDI	GCAATG	1 cut(s)	81
BsrI	ACTGG	1 cut(s)	30
Bst6I	CTCTTC	1 cut(s)	24
BstAPI	GCANNNNNTGC	1 cut(s)	185
BstC8I	GCNNGC	1 cut(s)	33
BstDEI	CTNAG	2 cut(s)	99, 244
BstFNI	CGCG	1 cut(s)	199
BstHHI	GCGC	2 cut(s)	31, 201
BstMWI	GCNNNNNNNGC	4 cut(s)	41, 95, 163, 185
BstNSI	RCATGY	2 cut(s)	35, 93
BstUI	CGCG	1 cut(s)	199
BstV1I	GCAGC	1 cut(s)	172
BtsI	GCAGTG	1 cut(s)	123
BtsIMutI	CAGTG	2 cut(s)	23, 123
Cac8I	GCNNGC	1 cut(s)	33
CfoI	GCGC	2 cut(s)	31, 201
CviAII	CATG	3 cut(s)	32, 38, 90
CviJI	RGCY	5 cut(s)	11, 98, 103, 166, 185
CviKI_1	RGCY	5 cut(s)	11, 98, 103, 166, 185
DdeI	CTNAG	2 cut(s)	99, 244
Eam1104I	CTCTTC	1 cut(s)	24
EarI	CTCTTC	1 cut(s)	24
FaeI	CATG	3 cut(s)	35, 41, 93
FaiI	YATR	4 cut(s)	33, 39, 91, 146
FatI	CATG	3 cut(s)	31, 37, 89
Fnu4HI	GCNGC	2 cut(s)	12, 186
Fsp4HI	GCNGC	2 cut(s)	12, 186
GlaI	GCGC	2 cut(s)	30, 200
GluI	GCNGC	2 cut(s)	12, 186
HhaI	GCGC	2 cut(s)	31, 201
Hin1II	CATG	3 cut(s)	35, 41, 93
Hin6I	GCGC	2 cut(s)	29, 199
HinP1I	GCGC	2 cut(s)	29, 199
HphI	GGTGA	1 cut(s)	142
Hpy188I	TCNGA	2 cut(s)	55, 247
HpyAV	CCTTC	2 cut(s)	52, 127
HpyCH4IV	ACGT	1 cut(s)	84
HpyCH4V	TGCA	1 cut(s)	74
HpyF10VI	GCNNNNNNNGC	4 cut(s)	41, 95, 163, 185
HpyF3I	CTNAG	2 cut(s)	99, 244
HpySE526I	ACGT	1 cut(s)	84
Hsp92II	CATG	3 cut(s)	35, 41, 93
HspAI	GCGC	2 cut(s)	29, 199
LpnPI	CCDG	2 cut(s)	11, 92
Lsp1109I	GCAGC	1 cut(s)	172
LweI	GCATC	2 cut(s)	53, 61
MaeII	ACGT	1 cut(s)	84
MboII	GAAGA	2 cut(s)	11, 91
MluCI	AATT	1 cut(s)	159
MnlI	CCTC	2 cut(s)	27, 241
MslI	CAYNNNNRTG	1 cut(s)	36
MvnI	CGCG	1 cut(s)	199
MwoI	GCNNNNNNNGC	4 cut(s)	41, 95, 163, 185
NlaIII	CATG	3 cut(s)	35, 41, 93
NspI	RCATGY	2 cut(s)	35, 93
PaeI	GCATGC	1 cut(s)	35
PflMI	CCANNNNNTGG	1 cut(s)	181
PkrI	GCNGC	2 cut(s)	13, 187
PsiI	TTATAA	1 cut(s)	146
RseI	CAYNNNNRTG	1 cut(s)	36
SatI	GCNGC	2 cut(s)	12, 186
SetI	ASST	3 cut(s)	87, 105, 168
SfaNI	GCATC	2 cut(s)	53, 61
SmiMI	CAYNNNNRTG	1 cut(s)	36
SphI	GCATGC	1 cut(s)	35
Sse9I	AATT	1 cut(s)	159
SsiI	CCGC	1 cut(s)	12
TaiI	ACGT	1 cut(s)	87
TasI	AATT	1 cut(s)	159
TauI	GCSGC	1 cut(s)	14
TscAI	CASTG	2 cut(s)	30, 123
TseI	GCWGC	1 cut(s)	185
TspDTI	ATGAA	2 cut(s)	92, 193
TspRI	CASTG	2 cut(s)	30, 123
Van91I	CCANNNNNTGG	1 cut(s)	181
XceI	RCATGY	2 cut(s)	35, 93

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.