Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0007947

Physical Location & Seq

Genomic Coordinates Forward (+)

6446618 .. 6447399

Gene Structure 782 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1012800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

ATGATAATTATATTTGCCAGAAGATTTTCTCAGGTGATTCAAGGAGATGTGCTGAAGACTGAGGAGCTTCCCTATTTCGATATATGTGCGGCAAATATCCCTTATCAAATCTCATCTCCCTTAACCTTCAAGTTACTGAAGCACCAACCTGCTTTCCGATGTGCCATTATAATGTTTCAGAGGGAATTTGCGAGGAGACTGGTTGTGCAGCCCGGTGACAAGCTCTATTGTCGTCTTACCCCCAGGAAACCGGCTTTACAAGTGAACCAAAAGGAGTGGGATGGCTTTTTGCGGATCTGTTTCAATAGGAAAAACAAAACCCTTGGCTCAATTTTTAGGCAGAAAAGTGTCATCAATTTGCTCGAGAAGAATTACAAGACCCTGCAGGCTCTTAATCATGCAACAGCCCAAGAAGAGGATACTAATGATGTGATGGAGTTTATGGATGAGGACATGGGGACGGATGGTGTTAATGCGGAAGGGGAGATATCCGAATTCAAGAAAAAGGTGCTGGATGTGTTGAAGAAGTCTGGTTTTGAAGGTGAAAGGTCCTCCAAGCTCAAATTACAGCAATTTTTGAGACCTACTTTCCCAGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000154 GO:0000179 GO:0001510 GO:0001708 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005739 GO:0005759 GO:0005829 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008173 GO:0008649 GO:0008757 GO:0009451 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010604 GO:0010628 GO:0016070 GO:0016072 GO:0016433 GO:0016740 GO:0016741 GO:0019219 GO:0019222 GO:0022613 GO:0030154 GO:0031167 GO:0031323 GO:0031325 GO:0031974 GO:0031981 GO:0032259 GO:0032502 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043414 GO:0044085 GO:0044087 GO:0044089 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0045165 GO:0045935 GO:0046483 GO:0048518 GO:0048522 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051301 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0090069 GO:0090070 GO:0090304 GO:0140098 GO:0140102 GO:1901360 GO:2000232 GO:2000234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RrnaAD

Protein Analysis

200

Amino Acids

23.08

Weight (kDa)

9.26

Isoelectric Point (pI)

42.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RrnaAD	PF00398	11 - 80	1.4e-13	Ribosomal RNA adenine dimethylase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007947)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47420
fragaria_vesca	FvH4_5g39320 FvH4_5g39320 FvH4_5g39320 FvH4_5g39320 FvH4_5g39320
malus_domestica	MD01G1012800.v1.1 MD11G1314900.v1.1
prunus_persica	Prupe.1G563800_v2.0.a1 Prupe.8G271700_v2.0.a1
pyrus_communis	pycom01g04480 pycom03g23390 pycom11g27510
rosa_chinensis	RchiOBHm_Chr7g0241601
rosa_laevigata	RLG00000000562
rosa_multiflora	Rmu_sc0002268.1_g000014 Rmu_sc0014556.1_g000002
rosa_roxburghii	Rroxscaffold_3G00218890
rosa_rugosa	Rorug07G0345600
rosa_samantha	Rh7AG500000 Rh7BG471100 Rh7CG516400 Rh7DG485000
rosa_wichuraiana	Rw7G042230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	170
Acc36I	ACCTGC	1 cut(s)	157
AciI	CCGC	3 cut(s)	89, 292, 476
AclWI	GGATC	1 cut(s)	302
AcsI	RAATTY	2 cut(s)	185, 494
AcuI	CTGAAG	2 cut(s)	74, 158
AfiI	CCNNNNNNNGG	1 cut(s)	415
AgsI	TTSAA	6 cut(s)	41, 130, 304, 499, 523, 539
AjnI	CCWGG	1 cut(s)	242
AluBI	AGCT	3 cut(s)	67, 223, 559
AluI	AGCT	3 cut(s)	67, 223, 559
Alw26I	GTCTC	2 cut(s)	190, 574
AlwI	GGATC	1 cut(s)	302
Ama87I	CYCGRG	1 cut(s)	362
ApeKI	GCWGC	1 cut(s)	208
ApoI	RAATTY	2 cut(s)	185, 494
Asp700I	GAANNNNTTC	1 cut(s)	25
AspS9I	GGNCC	1 cut(s)	549
AsuC2I	CCSGG	1 cut(s)	213
AsuHPI	GGTGA	3 cut(s)	46, 227, 554
AvaI	CYCGRG	1 cut(s)	362
AvaII	GGWCC	1 cut(s)	549
BbsI	GAAGAC	1 cut(s)	62
BbvI	GCAGC	1 cut(s)	220
BccI	CCATC	3 cut(s)	275, 427, 458
BcgI	CGANNNNNNTGC	2 cut(s)	68, 102
BciT130I	CCWGG	1 cut(s)	244
BciVI	GTATCC	1 cut(s)	412
BcnI	CCSGG	1 cut(s)	213
BcoDI	GTCTC	2 cut(s)	190, 574
BfmI	CTRYAG	1 cut(s)	383
BfuAI	ACCTGC	1 cut(s)	157
BfuI	GTATCC	1 cut(s)	412
BisI	GCNGC	2 cut(s)	90, 209
BlsI	GCNGC	2 cut(s)	91, 210
Bme1390I	CCNGG	2 cut(s)	213, 244
Bme18I	GGWCC	1 cut(s)	549
BmeT110I	CYCGRG	1 cut(s)	362
BmgT120I	GGNCC	1 cut(s)	549
BmrFI	CCNGG	2 cut(s)	213, 244
BmrI	ACTGGG	1 cut(s)	587
BmuI	ACTGGG	1 cut(s)	587
BpiI	GAAGAC	1 cut(s)	62
BpuMI	CCSGG	1 cut(s)	213
BsaI	GGTCTC	1 cut(s)	574
BsaJI	CCNNGG	2 cut(s)	242, 322
Bsc4I	CCNNNNNNNGG	1 cut(s)	415
Bse118I	RCCGGY	1 cut(s)	250
Bse1I	ACTGG	2 cut(s)	204, 593
BseBI	CCWGG	1 cut(s)	244
BseDI	CCNNGG	2 cut(s)	242, 322
BseGI	GGATG	4 cut(s)	286, 451, 469, 520
BseLI	CCNNNNNNNGG	1 cut(s)	415
BseMII	CTCAG	2 cut(s)	44, 51
BseNI	ACTGG	2 cut(s)	204, 593
BseRI	GAGGAG	2 cut(s)	77, 208
BseXI	GCAGC	1 cut(s)	220
BsgI	GTGCAG	1 cut(s)	227
BsiHKCI	CYCGRG	1 cut(s)	362
BsiSI	CCGG	2 cut(s)	213, 251
BslFI	GGGAC	1 cut(s)	472
BslI	CCNNNNNNNGG	1 cut(s)	415
BsmAI	GTCTC	2 cut(s)	190, 574
BsmFI	GGGAC	1 cut(s)	472
Bso31I	GGTCTC	1 cut(s)	574
BsoBI	CYCGRG	1 cut(s)	362
Bsp143I	GATC	1 cut(s)	294
BspACI	CCGC	3 cut(s)	89, 292, 476
BspCNI	CTCAG	2 cut(s)	43, 52
BspMAI	CTGCAG	1 cut(s)	387
BspMI	ACCTGC	1 cut(s)	157
BspPI	GGATC	1 cut(s)	302
BspTNI	GGTCTC	1 cut(s)	574
BsrFI	RCCGGY	1 cut(s)	250
BsrI	ACTGG	2 cut(s)	204, 593
BssAI	RCCGGY	1 cut(s)	250
BssECI	CCNNGG	2 cut(s)	242, 322
BssMI	GATC	1 cut(s)	294
BssT1I	CCWWGG	1 cut(s)	322
Bst2UI	CCWGG	1 cut(s)	244
Bst6I	CTCTTC	1 cut(s)	408
BstC8I	GCNNGC	1 cut(s)	387
BstDEI	CTNAG	2 cut(s)	30, 60
BstF5I	GGATG	4 cut(s)	286, 451, 469, 520
BstKTI	GATC	1 cut(s)	297
BstMAI	GTCTC	2 cut(s)	190, 574
BstMBI	GATC	1 cut(s)	294
BstNI	CCWGG	1 cut(s)	244
BstSCI	CCNGG	2 cut(s)	211, 242
BstSFI	CTRYAG	1 cut(s)	383
BstV1I	GCAGC	1 cut(s)	220
BstV2I	GAAGAC	1 cut(s)	62
BstX2I	RGATCY	1 cut(s)	294
BstYI	RGATCY	1 cut(s)	294
BsuI	GTATCC	1 cut(s)	412
BtsCI	GGATG	4 cut(s)	286, 451, 469, 520
BveI	ACCTGC	1 cut(s)	157
Cac8I	GCNNGC	1 cut(s)	387
Cfr10I	RCCGGY	1 cut(s)	250
Cfr13I	GGNCC	1 cut(s)	549
CspCI	CAANNNNNGTGG	2 cut(s)	257, 292
CviAII	CATG	2 cut(s)	398, 454
CviJI	RGCY	9 cut(s)	67, 211, 223, 254, 285, 327, 389, 407, 559
CviKI_1	RGCY	9 cut(s)	67, 211, 223, 254, 285, 327, 389, 407, 559
DdeI	CTNAG	2 cut(s)	30, 60
DpnI	GATC	1 cut(s)	296
DpnII	GATC	1 cut(s)	294
Eam1104I	CTCTTC	1 cut(s)	408
EarI	CTCTTC	1 cut(s)	408
Eco130I	CCWWGG	1 cut(s)	322
Eco31I	GGTCTC	1 cut(s)	574
Eco32I	GATATC	1 cut(s)	489
Eco47I	GGWCC	1 cut(s)	549
Eco57I	CTGAAG	2 cut(s)	74, 158
Eco88I	CYCGRG	1 cut(s)	362
EcoO109I	RGGNCCY	1 cut(s)	549
EcoRI	GAATTC	1 cut(s)	494
EcoRII	CCWGG	1 cut(s)	242
EcoRV	GATATC	1 cut(s)	489
EcoT14I	CCWWGG	1 cut(s)	322
ErhI	CCWWGG	1 cut(s)	322
FaeI	CATG	2 cut(s)	401, 457
FaiI	YATR	7 cut(s)	11, 83, 85, 170, 399, 443, 455
FaqI	GGGAC	1 cut(s)	472
FatI	CATG	2 cut(s)	397, 453
Fnu4HI	GCNGC	2 cut(s)	90, 209
FokI	GGATG	4 cut(s)	293, 458, 476, 527
Fsp4HI	GCNGC	2 cut(s)	90, 209
GluI	GCNGC	2 cut(s)	90, 209
HapII	CCGG	2 cut(s)	213, 251
Hin1II	CATG	2 cut(s)	401, 457
HinfI	GANTC	1 cut(s)	37
HpaII	CCGG	2 cut(s)	213, 251
HphI	GGTGA	3 cut(s)	46, 227, 554
Hpy166II	GTNNAC	1 cut(s)	265
Hpy188I	TCNGA	3 cut(s)	158, 180, 493
Hpy188III	TCNNGA	2 cut(s)	364, 499
Hpy8I	GTNNAC	1 cut(s)	265
HpyAV	CCTTC	3 cut(s)	136, 473, 533
HpyCH4V	TGCA	3 cut(s)	208, 385, 401
HpyF3I	CTNAG	2 cut(s)	30, 60
Hsp92II	CATG	2 cut(s)	401, 457
Kzo9I	GATC	1 cut(s)	294
LmnI	GCTCC	1 cut(s)	64
Lsp1109I	GCAGC	1 cut(s)	220
MaeIII	GTNAC	2 cut(s)	132, 215
MalI	GATC	1 cut(s)	296
MboI	GATC	1 cut(s)	294
MboII	GAAGA	5 cut(s)	33, 67, 379, 425, 535
MflI	RGATCY	1 cut(s)	294
MluCI	AATT	8 cut(s)	6, 185, 330, 355, 370, 494, 563, 572
MnlI	CCTC	6 cut(s)	55, 174, 186, 409, 442, 562
MroXI	GAANNNNTTC	1 cut(s)	25
MseI	TTAA	4 cut(s)	122, 393, 471, 598
MslI	CAYNNNNRTG	1 cut(s)	170
MspI	CCGG	2 cut(s)	213, 251
MspR9I	CCNGG	2 cut(s)	213, 244
MvaI	CCWGG	1 cut(s)	244
NciI	CCSGG	1 cut(s)	213
NdeII	GATC	1 cut(s)	294
NlaIII	CATG	2 cut(s)	401, 457
NmuCI	GTSAC	1 cut(s)	215
PaeR7I	CTCGAG	1 cut(s)	362
PdmI	GAANNNNTTC	1 cut(s)	25
PfeI	GAWTC	1 cut(s)	37
PkrI	GCNGC	2 cut(s)	91, 210
PpuMI	RGGWCCY	1 cut(s)	549
PsiI	TTATAA	1 cut(s)	170
Psp5II	RGGWCCY	1 cut(s)	549
Psp6I	CCWGG	1 cut(s)	242
PspGI	CCWGG	1 cut(s)	242
PspPI	GGNCC	1 cut(s)	549
PspPPI	RGGWCCY	1 cut(s)	549
PstI	CTGCAG	1 cut(s)	387
PsuI	RGATCY	1 cut(s)	294
RseI	CAYNNNNRTG	1 cut(s)	170
SaqAI	TTAA	4 cut(s)	122, 393, 471, 598
SatI	GCNGC	2 cut(s)	90, 209
Sau3AI	GATC	1 cut(s)	294
Sau96I	GGNCC	1 cut(s)	549
SbfI	CCTGCAGG	1 cut(s)	387
ScrFI	CCNGG	2 cut(s)	213, 244
SdaI	CCTGCAGG	1 cut(s)	387
SfcI	CTRYAG	1 cut(s)	383
Sfr274I	CTCGAG	1 cut(s)	362
SinI	GGWCC	1 cut(s)	549
SlaI	CTCGAG	1 cut(s)	362
SmiMI	CAYNNNNRTG	1 cut(s)	170
SmlI	CTYRAG	1 cut(s)	362
SmoI	CTYRAG	1 cut(s)	362
Sse8387I	CCTGCAGG	1 cut(s)	387
Sse9I	AATT	8 cut(s)	6, 185, 330, 355, 370, 494, 563, 572
SsiI	CCGC	3 cut(s)	89, 292, 476
StyD4I	CCNGG	2 cut(s)	211, 242
StyI	CCWWGG	1 cut(s)	322
TaqI	TCGA	2 cut(s)	78, 363
TasI	AATT	8 cut(s)	6, 185, 330, 355, 370, 494, 563, 572
TauI	GCSGC	1 cut(s)	92
TfiI	GAWTC	1 cut(s)	37
Tru1I	TTAA	4 cut(s)	122, 393, 471, 598
Tru9I	TTAA	4 cut(s)	122, 393, 471, 598
TseFI	GTSAC	1 cut(s)	215
TseI	GCWGC	1 cut(s)	208
Tsp45I	GTSAC	1 cut(s)	215
TspGWI	ACGGA	1 cut(s)	476
VpaK11BI	GGWCC	1 cut(s)	549
XapI	RAATTY	2 cut(s)	185, 494
XhoI	CTCGAG	1 cut(s)	362
XmnI	GAANNNNTTC	1 cut(s)	25

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.