Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0014032

Physical Location & Seq

Genomic Coordinates Forward (+)

19481254 .. 19484015

Gene Structure 2762 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G47470.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1086 bp

ATGGCGAAATCTCAGATCTGGTTTGGTTTTGCGTTACTCGCGTTGCTTCTGGTTTCAGCCGTAGCTGACGATGTGGTTGTTTTGACTGACGATAGCTTCGAAAAGGAAGTTGGTAAAGATAAAGGAGCTCTCGTCGAGTTTTACGCTCCCTGGTGTGGTCACTGCAAGAAACTTGCTCCAGAGTATGAAAAGCTAGGGGCAAGCTTCAAGAAGGCTAAGTCTGTGTTGATTGCAAAGGTTGATTGTGATGAGCAAAAGAGTGTCTGTACTAAATATGGTGTTAGTGGATACCCAACCATTCAGTGGTTTCCTAAAGGATCTCTTGAACCTCAAAAGTATGAGGGTCCACGCAATGCTGAAGCTTTGGCTGAATACGTGAACAAGGAAGGAGGCACCAACGTAAAATTAGCTGCAGTTCCACAAAACGTGGTTGTTTTGACACCTGACAATTTCGATGAGATTGTTCTGGATCAAAACAAAGATGTCCTAGTCGAATTTTATGCACCATGGTGTGGCCACTGCAAATCACTCGCTCCCACATACGAAAAGGTAGCCACAGTGTTTAAACAGGAAGAAGGTGTAGTCATCGCCAATTTGGATGCTGATGCACACAAAGCCCTTGGCGAGAAATATGGAGTGAGTGGATTCCCAACATTGAAATTCTTCCCAAAGGACAACAAAGCTGGTCACGATTATGACGGTGGCAGGGATTTAGATGACTTTGTAAGCTTCATCAACGAGAAATCTGGGACCAGCAGGGACAGTAAAGGGCAGCTTACTTCAAAGGCTGGTATAGTCGAAAGCTTAGATGCTTTGGTAAAAGAGTTAGTTGCAGCTAGTGAAGATGAGAAGAAGGCAGTGTTGTCTCGCATAGAAGAGGAAGCAAGTACCCTTAAGGGCTCCACCACGAGGTATGGAAAGCTTTACTTGAAACTCGCAAAGAGCTACATAGAAAAAGGTTCAGACTATGCTAGCAAAGAAACGGAGAGGCTTGGACGGGTGCTTGGGAAGTCGATAAGTCCAGTGAAAGCTGATGAACTCACTCTCAAGAGAAATATCCTAACCACGTTCGTTGCTTCTTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003756 GO:0003824 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005783 GO:0006457 GO:0006950 GO:0007275 GO:0008150 GO:0009505 GO:0009553 GO:0009566 GO:0009567 GO:0009790 GO:0009791 GO:0009793 GO:0009856 GO:0009987 GO:0010035 GO:0010038 GO:0010154 GO:0012505 GO:0016020 GO:0016853 GO:0016860 GO:0016864 GO:0019953 GO:0022414 GO:0030312 GO:0031090 GO:0032501 GO:0032502 GO:0033554 GO:0034976 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0044703 GO:0044706 GO:0046686 GO:0048229 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0048868 GO:0050896 GO:0051704 GO:0051716 GO:0061458 GO:0071944 GO:0098588 GO:0098805 GO:0140096

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

ERp29 Thioredoxin

Protein Analysis

361

Amino Acids

39.5

Weight (kDa)

5.8

Isoelectric Point (pI)

32.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Thioredoxin	PF00085	25 - 127	6.5e-33	Thioredoxin
Thioredoxin_2	PF13098	39 - 125	1.1e-07	Thioredoxin-like domain
OST3_OST6	PF04756	52 - 135	5e-08	OST3 / OST6 family, transporter family
OST3_OST6	PF04756	141 - 250	1e-05	OST3 / OST6 family, transporter family
Thioredoxin	PF00085	143 - 246	4.9e-32	Thioredoxin
Thioredoxin_2	PF13098	158 - 237	1.1e-07	Thioredoxin-like domain
ERp29	PF07749	264 - 357	6.1e-24	Endoplasmic reticulum protein ERp29, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014032)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47470 AT2G47470 AT2G47470 AT2G47470
fragaria_vesca	FvH4_6g07230
malus_domestica	MD04G1195300.v1.1 MD12G1207400.v1.1
prunus_persica	Prupe.6G315000_v2.0.a1
pyrus_communis	pycom04g17250
rosa_chinensis	RchiOBHm_Chr3g0456861
rosa_laevigata	RLG00000025273
rosa_multiflora	Rmu_sc0000133.1_g000018
rosa_roxburghii	Rroxscaffold_6G00422430
rosa_rugosa	Rorug03G0016400
rosa_samantha	Rh3BG078600 Rh3CG078400
rosa_wichuraiana	Rw3G006590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	392
AccB7I	CCANNNNNTGG	2 cut(s)	303, 512
AccII	CGCG	1 cut(s)	41
AclWI	GGATC	2 cut(s)	325, 477
AcoI	YGGCCR	1 cut(s)	514
AcsI	RAATTY	2 cut(s)	494, 659
AcuI	CTGAAG	1 cut(s)	378
AfaI	GTAC	2 cut(s)	268, 889
AfiI	CCNNNNNNNGG	4 cut(s)	155, 303, 512, 909
AflII	CTTAAG	1 cut(s)	893
AgsI	TTSAA	5 cut(s)	208, 326, 658, 783, 931
AjnI	CCWGG	1 cut(s)	149
AjuI	GAANNNNNNNTTGG	2 cut(s)	93, 125
AleI	CACNNNNGTG	1 cut(s)	508
Alw21I	GWGCWC	1 cut(s)	130
Alw26I	GTCTC	1 cut(s)	870
AlwI	GGATC	2 cut(s)	325, 477
AoxI	GGCC	1 cut(s)	514
ApeKI	GCWGC	3 cut(s)	410, 772, 833
ApoI	RAATTY	2 cut(s)	494, 659
ArsI	GACNNNNNNTTYG	2 cut(s)	80, 112
Asp700I	GAANNNNTTC	1 cut(s)	662
AspS9I	GGNCC	2 cut(s)	344, 750
AsuII	TTCGAA	1 cut(s)	99
AsuNHI	GCTAGC	1 cut(s)	971
AvaII	GGWCC	2 cut(s)	344, 750
BalI	TGGCCA	1 cut(s)	516
BanI	GGYRCC	1 cut(s)	392
BanII	GRGCYC	2 cut(s)	130, 902
BauI	CACGAG	1 cut(s)	907
Bbv12I	GWGCWC	1 cut(s)	130
BbvI	GCAGC	3 cut(s)	397, 784, 845
BceAI	ACGGC	1 cut(s)	44
BcgI	CGANNNNNNTGC	4 cut(s)	482, 511, 516, 545
BciT130I	CCWGG	1 cut(s)	151
BciVI	GTATCC	1 cut(s)	281
BcoDI	GTCTC	1 cut(s)	870
BfaI	CTAG	4 cut(s)	194, 488, 837, 972
BfmI	CTRYAG	1 cut(s)	411
BfrI	CTTAAG	1 cut(s)	893
BfuI	GTATCC	1 cut(s)	281
BglII	AGATCT	1 cut(s)	15
BisI	GCNGC	3 cut(s)	411, 773, 834
BlsI	GCNGC	3 cut(s)	412, 774, 835
Bme1390I	CCNGG	1 cut(s)	151
Bme18I	GGWCC	2 cut(s)	344, 750
BmgT120I	GGNCC	2 cut(s)	344, 750
BmiI	GGNNCC	4 cut(s)	345, 394, 751, 901
BmrFI	CCNGG	1 cut(s)	151
BmsI	GCATC	3 cut(s)	589, 595, 799
BmtI	GCTAGC	1 cut(s)	975
BpmI	CTGGAG	1 cut(s)	162
Bpu14I	TTCGAA	1 cut(s)	99
BpuEI	CTTGAG	1 cut(s)	1031
BsaAI	YACGTR	1 cut(s)	376
BsaJI	CCNNGG	3 cut(s)	149, 506, 619
BsaXI	ACNNNNNCTCC	2 cut(s)	117, 147
Bsc4I	CCNNNNNNNGG	4 cut(s)	155, 303, 512, 909
Bse1I	ACTGG	1 cut(s)	1022
Bse3DI	GCAATG	1 cut(s)	358
BseBI	CCWGG	1 cut(s)	151
BseDI	CCNNGG	3 cut(s)	149, 506, 619
BseGI	GGATG	1 cut(s)	604
BseLI	CCNNNNNNNGG	4 cut(s)	155, 303, 512, 909
BseMI	GCAATG	1 cut(s)	358
BseMII	CTCAG	1 cut(s)	26
BseNI	ACTGG	1 cut(s)	1022
BseXI	GCAGC	3 cut(s)	397, 784, 845
Bsh1236I	CGCG	1 cut(s)	41
BshFI	GGCC	1 cut(s)	516
BshNI	GGYRCC	1 cut(s)	392
BsiHKAI	GWGCWC	1 cut(s)	130
BslFI	GGGAC	2 cut(s)	763, 773
BslI	CCNNNNNNNGG	4 cut(s)	155, 303, 512, 909
BsmAI	GTCTC	1 cut(s)	870
BsmFI	GGGAC	2 cut(s)	763, 773
BsnI	GGCC	1 cut(s)	516
Bsp119I	TTCGAA	1 cut(s)	99
Bsp1286I	GDGCHC	2 cut(s)	130, 902
Bsp143I	GATC	3 cut(s)	15, 317, 469
Bsp19I	CCATGG	1 cut(s)	506
BspANI	GGCC	1 cut(s)	516
BspCNI	CTCAG	1 cut(s)	25
BspFNI	CGCG	1 cut(s)	41
BspLI	GGNNCC	4 cut(s)	345, 394, 751, 901
BspMAI	CTGCAG	1 cut(s)	415
BspOI	GCTAGC	1 cut(s)	975
BspPI	GGATC	2 cut(s)	325, 477
BspT104I	TTCGAA	1 cut(s)	99
BspT107I	GGYRCC	1 cut(s)	392
BspTI	CTTAAG	1 cut(s)	893
BsrDI	GCAATG	1 cut(s)	358
BsrI	ACTGG	1 cut(s)	1022
BssECI	CCNNGG	3 cut(s)	149, 506, 619
BssMI	GATC	3 cut(s)	15, 317, 469
BssSI	CACGAG	1 cut(s)	907
BssT1I	CCWWGG	2 cut(s)	506, 619
Bst2BI	CACGAG	1 cut(s)	907
Bst2UI	CCWGG	1 cut(s)	151
Bst4CI	ACNGT	3 cut(s)	559, 701, 764
Bst6I	CTCTTC	1 cut(s)	870
BstAFI	CTTAAG	1 cut(s)	893
BstBAI	YACGTR	1 cut(s)	376
BstBI	TTCGAA	1 cut(s)	99
BstC8I	GCNNGC	2 cut(s)	202, 973
BstDEI	CTNAG	3 cut(s)	12, 216, 805
BstDSI	CCRYGG	1 cut(s)	506
BstF5I	GGATG	1 cut(s)	604
BstFNI	CGCG	1 cut(s)	41
BstKTI	GATC	3 cut(s)	18, 320, 472
BstMAI	GTCTC	1 cut(s)	870
BstMBI	GATC	3 cut(s)	15, 317, 469
BstMWI	GCNNNNNNNGC	2 cut(s)	38, 614
BstNI	CCWGG	1 cut(s)	151
BstSCI	CCNGG	1 cut(s)	149
BstSFI	CTRYAG	1 cut(s)	411
BstUI	CGCG	1 cut(s)	41
BstV1I	GCAGC	3 cut(s)	397, 784, 845
BstX2I	RGATCY	2 cut(s)	15, 317
BstYI	RGATCY	2 cut(s)	15, 317
BsuI	GTATCC	1 cut(s)	281
BsuRI	GGCC	1 cut(s)	516
BtgI	CCRYGG	1 cut(s)	506
BtgZI	GCGATG	1 cut(s)	571
BtsCI	GGATG	1 cut(s)	604
BtsI	GCAGTG	3 cut(s)	160, 517, 864
BtsIMutI	CAGTG	6 cut(s)	160, 308, 517, 564, 864, 1029
Cac8I	GCNNGC	2 cut(s)	202, 973
Cfr13I	GGNCC	2 cut(s)	344, 750
Csp6I	GTAC	2 cut(s)	267, 888
CspCI	CAANNNNNGTGG	1 cut(s)	1054
CviAII	CATG	1 cut(s)	507
CviQI	GTAC	2 cut(s)	267, 888
DdeI	CTNAG	3 cut(s)	12, 216, 805
DpnI	GATC	3 cut(s)	17, 319, 471
DpnII	GATC	3 cut(s)	15, 317, 469
DraI	TTTAAA	1 cut(s)	565
EaeI	YGGCCR	1 cut(s)	514
Eam1104I	CTCTTC	1 cut(s)	870
EarI	CTCTTC	1 cut(s)	870
Ecl136II	GAGCTC	1 cut(s)	128
Eco130I	CCWWGG	2 cut(s)	506, 619
Eco24I	GRGCYC	2 cut(s)	130, 902
Eco47I	GGWCC	2 cut(s)	344, 750
Eco53kI	GAGCTC	1 cut(s)	128
Eco57I	CTGAAG	1 cut(s)	378
EcoICRI	GAGCTC	1 cut(s)	128
EcoRII	CCWGG	1 cut(s)	149
EcoT14I	CCWWGG	2 cut(s)	506, 619
EcoT38I	GRGCYC	2 cut(s)	130, 902
ErhI	CCWWGG	2 cut(s)	506, 619
FaeI	CATG	1 cut(s)	510
FalI	AAGNNNNNCTT	6 cut(s)	306, 338, 759, 791, 911, 943
FaqI	GGGAC	2 cut(s)	763, 773
FatI	CATG	1 cut(s)	506
Fnu4HI	GCNGC	3 cut(s)	411, 773, 834
FokI	GGATG	1 cut(s)	611
FriOI	GRGCYC	2 cut(s)	130, 902
Fsp4HI	GCNGC	3 cut(s)	411, 773, 834
FspBI	CTAG	4 cut(s)	194, 488, 837, 972
GluI	GCNGC	3 cut(s)	411, 773, 834
GsuI	CTGGAG	1 cut(s)	162
HaeIII	GGCC	1 cut(s)	516
Hin1II	CATG	1 cut(s)	510
HindIII	AAGCTT	5 cut(s)	202, 360, 727, 802, 920
HinfI	GANTC	1 cut(s)	645
Hpy166II	GTNNAC	2 cut(s)	347, 379
Hpy188I	TCNGA	2 cut(s)	15, 964
Hpy188III	TCNNGA	6 cut(s)	179, 208, 323, 467, 689, 1048
Hpy8I	GTNNAC	2 cut(s)	347, 379
Hpy99I	CGWCG	1 cut(s)	137
HpyAV	CCTTC	4 cut(s)	205, 380, 569, 847
HpyCH4III	ACNGT	3 cut(s)	559, 701, 764
HpyCH4IV	ACGT	4 cut(s)	375, 399, 426, 1067
HpyCH4V	TGCA	7 cut(s)	165, 233, 413, 503, 522, 608, 833
HpyF10VI	GCNNNNNNNGC	2 cut(s)	38, 614
HpyF3I	CTNAG	3 cut(s)	12, 216, 805
HpySE526I	ACGT	4 cut(s)	375, 399, 426, 1067
Hsp92II	CATG	1 cut(s)	510
Kzo9I	GATC	3 cut(s)	15, 317, 469
LmnI	GCTCC	5 cut(s)	125, 151, 181, 538, 905
Lsp1109I	GCAGC	3 cut(s)	397, 784, 845
LweI	GCATC	3 cut(s)	589, 595, 799
MaeI	CTAG	4 cut(s)	194, 488, 837, 972
MaeII	ACGT	4 cut(s)	375, 399, 426, 1067
MaeIII	GTNAC	3 cut(s)	33, 158, 686
MalI	GATC	3 cut(s)	17, 319, 471
MboI	GATC	3 cut(s)	15, 317, 469
MboII	GAAGA	6 cut(s)	584, 655, 854, 862, 887, 1071
MflI	RGATCY	2 cut(s)	15, 317
MhlI	GDGCHC	2 cut(s)	130, 902
MlsI	TGGCCA	1 cut(s)	516
MluCI	AATT	5 cut(s)	404, 448, 494, 592, 659
MluNI	TGGCCA	1 cut(s)	516
MnlI	CCTC	6 cut(s)	334, 339, 383, 871, 903, 981
Mox20I	TGGCCA	1 cut(s)	516
MroXI	GAANNNNTTC	1 cut(s)	662
MscI	TGGCCA	1 cut(s)	516
MseI	TTAA	3 cut(s)	564, 894, 1084
MslI	CAYNNNNRTG	2 cut(s)	508, 693
Msp20I	TGGCCA	1 cut(s)	516
MspCI	CTTAAG	1 cut(s)	893
MspR9I	CCNGG	1 cut(s)	151
MssI	GTTTAAAC	1 cut(s)	565
MvaI	CCWGG	1 cut(s)	151
MvnI	CGCG	1 cut(s)	41
MwoI	GCNNNNNNNGC	2 cut(s)	38, 614
NcoI	CCATGG	1 cut(s)	506
NdeII	GATC	3 cut(s)	15, 317, 469
NheI	GCTAGC	1 cut(s)	971
NlaIII	CATG	1 cut(s)	510
NlaIV	GGNNCC	4 cut(s)	345, 394, 751, 901
NmuCI	GTSAC	2 cut(s)	158, 686
NspV	TTCGAA	1 cut(s)	99
OliI	CACNNNNGTG	1 cut(s)	508
PcsI	WCGNNNNNNNCGW	1 cut(s)	96
PdmI	GAANNNNTTC	1 cut(s)	662
PfeI	GAWTC	1 cut(s)	645
PflMI	CCANNNNNTGG	2 cut(s)	303, 512
PkrI	GCNGC	3 cut(s)	412, 774, 835
PmeI	GTTTAAAC	1 cut(s)	565
Ppu21I	YACGTR	1 cut(s)	376
Psp124BI	GAGCTC	1 cut(s)	130
Psp6I	CCWGG	1 cut(s)	149
PspGI	CCWGG	1 cut(s)	149
PspN4I	GGNNCC	4 cut(s)	345, 394, 751, 901
PspPI	GGNCC	2 cut(s)	344, 750
PstI	CTGCAG	1 cut(s)	415
PsuI	RGATCY	2 cut(s)	15, 317
RsaI	GTAC	2 cut(s)	268, 889
RsaNI	GTAC	2 cut(s)	267, 888
RseI	CAYNNNNRTG	2 cut(s)	508, 693
SacI	GAGCTC	1 cut(s)	130
SaqAI	TTAA	3 cut(s)	564, 894, 1084
SatI	GCNGC	3 cut(s)	411, 773, 834
Sau3AI	GATC	3 cut(s)	15, 317, 469
Sau96I	GGNCC	2 cut(s)	344, 750
ScrFI	CCNGG	1 cut(s)	151
SduI	GDGCHC	2 cut(s)	130, 902
SfaNI	GCATC	3 cut(s)	589, 595, 799
SfcI	CTRYAG	1 cut(s)	411
SfuI	TTCGAA	1 cut(s)	99
SinI	GGWCC	2 cut(s)	344, 750
SmiMI	CAYNNNNRTG	2 cut(s)	508, 693
SmlI	CTYRAG	2 cut(s)	893, 1046
SmoI	CTYRAG	2 cut(s)	893, 1046
Sse9I	AATT	5 cut(s)	404, 448, 494, 592, 659
SspMI	CTAG	4 cut(s)	194, 488, 837, 972
SstI	GAGCTC	1 cut(s)	130
StyD4I	CCNGG	1 cut(s)	149
StyI	CCWWGG	2 cut(s)	506, 619
TaaI	ACNGT	3 cut(s)	559, 701, 764
TaiI	ACGT	4 cut(s)	378, 402, 429, 1070
TaqI	TCGA	6 cut(s)	99, 135, 453, 492, 798, 1013
TasI	AATT	5 cut(s)	404, 448, 494, 592, 659
TatI	WGTACW	1 cut(s)	266
TfiI	GAWTC	1 cut(s)	645
Tru1I	TTAA	3 cut(s)	564, 894, 1084
Tru9I	TTAA	3 cut(s)	564, 894, 1084
TscAI	CASTG	6 cut(s)	167, 308, 524, 564, 864, 1029
TseFI	GTSAC	2 cut(s)	158, 686
TseI	GCWGC	3 cut(s)	410, 772, 833
Tsp45I	GTSAC	2 cut(s)	158, 686
TspDTI	ATGAA	3 cut(s)	201, 721, 1050
TspGWI	ACGGA	1 cut(s)	998
TspRI	CASTG	6 cut(s)	167, 308, 524, 564, 864, 1029
Van91I	CCANNNNNTGG	2 cut(s)	303, 512
Vha464I	CTTAAG	1 cut(s)	893
VpaK11BI	GGWCC	2 cut(s)	344, 750
XapI	RAATTY	2 cut(s)	494, 659
XcmI	CCANNNNNNNNNTGG	1 cut(s)	300
XmnI	GAANNNNTTC	1 cut(s)	662
XspI	CTAG	4 cut(s)	194, 488, 837, 972

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.