Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0014032

Physical Location & Seq

Genomic Coordinates Reverse (-)

6144644 .. 6148945

Gene Structure 4302 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG078600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 993 bp

ATGAGCTCAAAGACTCTATTCGCTATCGGAGCCGTAGCAGCTCTGCTGTTTGTGTCATCGGTTTTCGCAGACGACGTCGTCGTGCTGACGGAGGACAACTTCGAGAAGGAGGTCGGTCAAGATCGTCCTGCTCTCGTCGAGTTCTACGCTCCCTGGTGTGGACATTGTAAGAAGCTTGCCCCAGAGTATGAGAAGCTTGGCGCAAGTTTCAAGAAAGCAAAGTCTGTTTTGATCGGAAAGGTGGACTGTGATGAGCACAAGAGTGTTTGTGGCAAGTTTGGAGTTTCTGGTTACCCCACAATTCAATGGTTCCCAAAAGGGTCCCTAGAACCCAAAAAGTATGAAGGTGCCCGTACTTCAGAAGCTCTAGTTGAGTATGTGAATAAGGAAGCAGGGACCAATGTGAAGATAGCTGCAATCCCATCCAGTGTTGTGGTGCTTACACAAGATAATTTTGATGATGTTGTCCTGGACAAAACAAAAGATGTACTGGTGGAGTTCTATGCTCCATGGTGCGGACATTGCAAATCCCTTGCTCCTACTTATGAGAAGGTTGCAGCAGCATTTAAGTTCGATGGAGATGTAGTGATTGCTAATGTTGATGCTGACAAATACAAGGATATAGCTGAGAAGTATGGAGTGAGTGGATATCCTACATTGAAATTTTTCCCAAGGGGCAACAAGGATGGTGAAGAGTATGGTGGGGGCAGAGATTTAGAAGATTTTGTAAATTTCATCAATGAGAAATGTGGGACTAGCAGAGATGCGAAGGGGCAACTTACTTCCAAAGCTGGAATAGTCGCACATTTGGATGAATTAGTGAAGGAGTTCGTGAAAGCTGGCAGTGAGGAGAAGAAGGCCATCGTTTCCAAGATCGAAGAGGAAGTTGGAAAGCTCGAGGGTTCTGCTGCAAGGTCAGCACAATCTCTCCCTATTTTGATAAAGTTTCTTTTTGCACATTACTTCAATGAATATGCAATTAGAATATTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003756 GO:0003824 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005783 GO:0006457 GO:0006950 GO:0007275 GO:0008150 GO:0009505 GO:0009553 GO:0009566 GO:0009567 GO:0009790 GO:0009791 GO:0009793 GO:0009856 GO:0009987 GO:0010035 GO:0010038 GO:0010154 GO:0012505 GO:0016020 GO:0016853 GO:0016860 GO:0016864 GO:0019953 GO:0022414 GO:0030312 GO:0031090 GO:0032501 GO:0032502 GO:0033554 GO:0034976 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0044703 GO:0044706 GO:0046686 GO:0048229 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0048868 GO:0050896 GO:0051704 GO:0051716 GO:0061458 GO:0071944 GO:0098588 GO:0098805 GO:0140096

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

ERp29 Thioredoxin

Protein Analysis

330

Amino Acids

36.24

Weight (kDa)

5.59

Isoelectric Point (pI)

28.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Thioredoxin	PF00085	26 - 128	4.2e-33	Thioredoxin
Thioredoxin_2	PF13098	39 - 125	1.5e-06	Thioredoxin-like domain
OST3_OST6	PF04756	53 - 138	1.9e-07	OST3 / OST6 family, transporter family
Thioredoxin	PF00085	144 - 247	5.2e-33	Thioredoxin
OST3_OST6	PF04756	144 - 251	4.9e-06	OST3 / OST6 family, transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014032)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47470 AT2G47470 AT2G47470 AT2G47470
fragaria_vesca	FvH4_6g07230
malus_domestica	MD04G1195300.v1.1 MD12G1207400.v1.1
prunus_persica	Prupe.6G315000_v2.0.a1
pyrus_communis	pycom04g17250
rosa_chinensis	RchiOBHm_Chr3g0456861
rosa_laevigata	RLG00000025273
rosa_multiflora	Rmu_sc0000133.1_g000018
rosa_roxburghii	Rroxscaffold_6G00422430
rosa_rugosa	Rorug03G0016400
rosa_samantha	Rh3BG078600 Rh3CG078400
rosa_wichuraiana	Rw3G006590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	77
AatII	GACGTC	1 cut(s)	78
AccB1I	GGYRCC	1 cut(s)	347
AciI	CCGC	1 cut(s)	516
AcsI	RAATTY	2 cut(s)	662, 730
AcuI	CTGAAG	1 cut(s)	342
AcyI	GRCGYC	1 cut(s)	75
AfaI	GTAC	2 cut(s)	355, 489
AfiI	CCNNNNNNNGG	2 cut(s)	158, 515
AgsI	TTSAA	4 cut(s)	211, 305, 661, 967
AjnI	CCWGG	2 cut(s)	152, 468
AjuI	GAANNNNNNNTTGG	2 cut(s)	870, 902
AleI	CACNNNNGTG	1 cut(s)	261
Alw21I	GWGCWC	2 cut(s)	8, 258
Ama87I	CYCGRG	1 cut(s)	896
AoxI	GGCC	1 cut(s)	858
ApeKI	GCWGC	5 cut(s)	38, 413, 557, 560, 908
ApoI	RAATTY	2 cut(s)	662, 730
Asp700I	GAANNNNTTC	2 cut(s)	665, 827
AspLEI	GCGC	1 cut(s)	203
AspS9I	GGNCC	2 cut(s)	321, 396
AsuHPI	GGTGA	1 cut(s)	701
AvaI	CYCGRG	1 cut(s)	896
AvaII	GGWCC	2 cut(s)	321, 396
BaeGI	GKGCMC	1 cut(s)	352
BanI	GGYRCC	1 cut(s)	347
BanII	GRGCYC	1 cut(s)	8
Bbv12I	GWGCWC	2 cut(s)	8, 258
BbvI	GCAGC	5 cut(s)	50, 400, 569, 572, 895
BccI	CCATC	4 cut(s)	430, 569, 680, 869
BceAI	ACGGC	1 cut(s)	17
BcgI	CGANNNNNNTGC	2 cut(s)	887, 921
BciT130I	CCWGG	2 cut(s)	154, 470
BfaI	CTAG	3 cut(s)	326, 368, 756
BisI	GCNGC	5 cut(s)	39, 414, 558, 561, 909
BlsI	GCNGC	5 cut(s)	40, 415, 559, 562, 910
Bme1390I	CCNGG	2 cut(s)	154, 470
Bme18I	GGWCC	2 cut(s)	321, 396
BmeT110I	CYCGRG	1 cut(s)	896
BmgT120I	GGNCC	2 cut(s)	321, 396
BmiI	GGNNCC	6 cut(s)	31, 311, 322, 323, 349, 397
BmrFI	CCNGG	2 cut(s)	154, 470
BmsI	GCATC	2 cut(s)	592, 754
BsaHI	GRCGYC	1 cut(s)	75
BsaJI	CCNNGG	3 cut(s)	152, 509, 671
BsaXI	ACNNNNNCTCC	4 cut(s)	570, 600, 912, 942
Bsc4I	CCNNNNNNNGG	2 cut(s)	158, 515
Bse1I	ACTGG	2 cut(s)	426, 495
Bse3DI	GCAATG	1 cut(s)	520
BseBI	CCWGG	2 cut(s)	154, 470
BseDI	CCNNGG	3 cut(s)	152, 509, 671
BseGI	GGATG	3 cut(s)	422, 691, 817
BseLI	CCNNNNNNNGG	2 cut(s)	158, 515
BseMI	GCAATG	1 cut(s)	520
BseMII	CTCAG	1 cut(s)	618
BseNI	ACTGG	2 cut(s)	426, 495
BseRI	GAGGAG	1 cut(s)	863
BseSI	GKGCMC	1 cut(s)	352
BseXI	GCAGC	5 cut(s)	50, 400, 569, 572, 895
BshFI	GGCC	1 cut(s)	860
BshNI	GGYRCC	1 cut(s)	347
BsiHKAI	GWGCWC	2 cut(s)	8, 258
BsiHKCI	CYCGRG	1 cut(s)	896
BslFI	GGGAC	3 cut(s)	307, 409, 766
BslI	CCNNNNNNNGG	2 cut(s)	158, 515
BsmFI	GGGAC	3 cut(s)	307, 409, 766
BsnI	GGCC	1 cut(s)	860
BsoBI	CYCGRG	1 cut(s)	896
Bsp1286I	GDGCHC	3 cut(s)	8, 258, 352
Bsp143I	GATC	3 cut(s)	121, 231, 873
Bsp19I	CCATGG	1 cut(s)	509
BspACI	CCGC	1 cut(s)	516
BspANI	GGCC	1 cut(s)	860
BspCNI	CTCAG	1 cut(s)	619
BspLI	GGNNCC	6 cut(s)	31, 311, 322, 323, 349, 397
BspT107I	GGYRCC	1 cut(s)	347
BsrDI	GCAATG	1 cut(s)	520
BsrI	ACTGG	2 cut(s)	426, 495
BssECI	CCNNGG	3 cut(s)	152, 509, 671
BssMI	GATC	3 cut(s)	121, 231, 873
BssNI	GRCGYC	1 cut(s)	75
BssT1I	CCWWGG	2 cut(s)	509, 671
Bst2UI	CCWGG	2 cut(s)	154, 470
Bst4CI	ACNGT	1 cut(s)	248
Bst6I	CTCTTC	2 cut(s)	687, 873
BstACI	GRCGYC	1 cut(s)	75
BstC8I	GCNNGC	2 cut(s)	177, 841
BstDEI	CTNAG	1 cut(s)	627
BstDSI	CCRYGG	1 cut(s)	509
BstEII	GGTNACC	1 cut(s)	290
BstF5I	GGATG	3 cut(s)	422, 691, 817
BstHHI	GCGC	1 cut(s)	203
BstKTI	GATC	3 cut(s)	124, 234, 876
BstMBI	GATC	3 cut(s)	121, 231, 873
BstMWI	GCNNNNNNNGC	4 cut(s)	29, 38, 522, 917
BstNI	CCWGG	2 cut(s)	154, 470
BstPI	GGTNACC	1 cut(s)	290
BstSCI	CCNGG	2 cut(s)	152, 468
BstSLI	GKGCMC	1 cut(s)	352
BstV1I	GCAGC	5 cut(s)	50, 400, 569, 572, 895
BstXI	CCANNNNNNTGG	1 cut(s)	433
BsuRI	GGCC	1 cut(s)	860
BtgI	CCRYGG	1 cut(s)	509
BtsCI	GGATG	3 cut(s)	422, 691, 817
BtsI	GCAGTG	1 cut(s)	850
BtsIMutI	CAGTG	2 cut(s)	433, 850
Cac8I	GCNNGC	2 cut(s)	177, 841
CfoI	GCGC	1 cut(s)	203
Cfr13I	GGNCC	2 cut(s)	321, 396
Csp6I	GTAC	2 cut(s)	354, 488
CviAII	CATG	1 cut(s)	510
CviQI	GTAC	2 cut(s)	354, 488
DdeI	CTNAG	1 cut(s)	627
DpnI	GATC	3 cut(s)	123, 233, 875
DpnII	GATC	3 cut(s)	121, 231, 873
DrdI	GACNNNNNNGTC	1 cut(s)	77
DseDI	GACNNNNNNGTC	1 cut(s)	77
Eam1104I	CTCTTC	2 cut(s)	687, 873
EarI	CTCTTC	2 cut(s)	687, 873
Ecl136II	GAGCTC	1 cut(s)	6
Eco130I	CCWWGG	2 cut(s)	509, 671
Eco24I	GRGCYC	1 cut(s)	8
Eco32I	GATATC	1 cut(s)	650
Eco47I	GGWCC	2 cut(s)	321, 396
Eco53kI	GAGCTC	1 cut(s)	6
Eco57I	CTGAAG	1 cut(s)	342
Eco88I	CYCGRG	1 cut(s)	896
Eco91I	GGTNACC	1 cut(s)	290
EcoICRI	GAGCTC	1 cut(s)	6
EcoO109I	RGGNCCY	1 cut(s)	321
EcoO65I	GGTNACC	1 cut(s)	290
EcoRII	CCWGG	2 cut(s)	152, 468
EcoRV	GATATC	1 cut(s)	650
EcoT14I	CCWWGG	2 cut(s)	509, 671
EcoT38I	GRGCYC	1 cut(s)	8
ErhI	CCWWGG	2 cut(s)	509, 671
FaeI	CATG	1 cut(s)	513
FaqI	GGGAC	3 cut(s)	307, 409, 766
FatI	CATG	1 cut(s)	509
Fnu4HI	GCNGC	5 cut(s)	39, 414, 558, 561, 909
FokI	GGATG	3 cut(s)	409, 698, 824
FriOI	GRGCYC	1 cut(s)	8
Fsp4HI	GCNGC	5 cut(s)	39, 414, 558, 561, 909
FspBI	CTAG	3 cut(s)	326, 368, 756
GlaI	GCGC	1 cut(s)	202
GluI	GCNGC	5 cut(s)	39, 414, 558, 561, 909
HaeIII	GGCC	1 cut(s)	860
HhaI	GCGC	1 cut(s)	203
Hin1I	GRCGYC	1 cut(s)	75
Hin1II	CATG	1 cut(s)	513
Hin6I	GCGC	1 cut(s)	201
HinP1I	GCGC	1 cut(s)	201
HindIII	AAGCTT	2 cut(s)	173, 194
HinfI	GANTC	1 cut(s)	13
HphI	GGTGA	1 cut(s)	701
Hpy166II	GTNNAC	2 cut(s)	161, 244
Hpy188I	TCNGA	3 cut(s)	29, 236, 361
Hpy188III	TCNNGA	4 cut(s)	103, 119, 211, 832
Hpy8I	GTNNAC	2 cut(s)	161, 244
Hpy99I	CGWCG	4 cut(s)	77, 80, 83, 140
HpyAV	CCTTC	6 cut(s)	100, 338, 544, 763, 817, 850
HpyCH4III	ACNGT	1 cut(s)	248
HpyCH4IV	ACGT	1 cut(s)	75
HpyCH4V	TGCA	6 cut(s)	416, 525, 557, 911, 956, 977
HpyF10VI	GCNNNNNNNGC	4 cut(s)	29, 38, 522, 917
HpyF3I	CTNAG	1 cut(s)	627
HpySE526I	ACGT	1 cut(s)	75
Hsp92I	GRCGYC	1 cut(s)	75
Hsp92II	CATG	1 cut(s)	513
HspAI	GCGC	1 cut(s)	201
KflI	GGGWCCC	1 cut(s)	321
Kzo9I	GATC	3 cut(s)	121, 231, 873
LmnI	GCTCC	4 cut(s)	29, 154, 511, 541
Lsp1109I	GCAGC	5 cut(s)	50, 400, 569, 572, 895
LweI	GCATC	2 cut(s)	592, 754
MaeI	CTAG	3 cut(s)	326, 368, 756
MaeII	ACGT	1 cut(s)	75
MaeIII	GTNAC	1 cut(s)	290
MalI	GATC	3 cut(s)	123, 233, 875
MboI	GATC	3 cut(s)	121, 231, 873
MboII	GAAGA	5 cut(s)	418, 704, 731, 865, 890
MhlI	GDGCHC	3 cut(s)	8, 258, 352
MluCI	AATT	6 cut(s)	300, 451, 662, 730, 815, 978
MlyI	GAGTC	1 cut(s)	7
MmeI	TCCRAC	1 cut(s)	868
MnlI	CCTC	5 cut(s)	85, 103, 841, 874, 892
MroXI	GAANNNNTTC	2 cut(s)	665, 827
MseI	TTAA	1 cut(s)	567
MslI	CAYNNNNRTG	2 cut(s)	261, 810
MspR9I	CCNGG	2 cut(s)	154, 470
MvaI	CCWGG	2 cut(s)	154, 470
MwoI	GCNNNNNNNGC	4 cut(s)	29, 38, 522, 917
NcoI	CCATGG	1 cut(s)	509
NdeII	GATC	3 cut(s)	121, 231, 873
NlaIII	CATG	1 cut(s)	513
NlaIV	GGNNCC	6 cut(s)	31, 311, 322, 323, 349, 397
OliI	CACNNNNGTG	1 cut(s)	261
PaeR7I	CTCGAG	1 cut(s)	896
PcsI	WCGNNNNNNNCGW	2 cut(s)	72, 78
PdmI	GAANNNNTTC	2 cut(s)	665, 827
PflFI	GACNNNGTC	2 cut(s)	74, 77
PfoI	TCCNGGA	1 cut(s)	468
PkrI	GCNGC	5 cut(s)	40, 415, 559, 562, 910
PleI	GAGTC	1 cut(s)	7
PpsI	GAGTC	1 cut(s)	7
PpuMI	RGGWCCY	1 cut(s)	321
Psp124BI	GAGCTC	1 cut(s)	8
Psp5II	RGGWCCY	1 cut(s)	321
Psp6I	CCWGG	2 cut(s)	152, 468
PspEI	GGTNACC	1 cut(s)	290
PspGI	CCWGG	2 cut(s)	152, 468
PspN4I	GGNNCC	6 cut(s)	31, 311, 322, 323, 349, 397
PspPI	GGNCC	2 cut(s)	321, 396
PspPPI	RGGWCCY	1 cut(s)	321
PspXI	VCTCGAGB	1 cut(s)	896
PsyI	GACNNNGTC	2 cut(s)	74, 77
RsaI	GTAC	2 cut(s)	355, 489
RsaNI	GTAC	2 cut(s)	354, 488
RseI	CAYNNNNRTG	2 cut(s)	261, 810
SacI	GAGCTC	1 cut(s)	8
SaqAI	TTAA	1 cut(s)	567
SatI	GCNGC	5 cut(s)	39, 414, 558, 561, 909
Sau3AI	GATC	3 cut(s)	121, 231, 873
Sau96I	GGNCC	2 cut(s)	321, 396
SchI	GAGTC	1 cut(s)	7
ScrFI	CCNGG	2 cut(s)	154, 470
SduI	GDGCHC	3 cut(s)	8, 258, 352
SfaNI	GCATC	2 cut(s)	592, 754
Sfr274I	CTCGAG	1 cut(s)	896
SinI	GGWCC	2 cut(s)	321, 396
SlaI	CTCGAG	1 cut(s)	896
SmiMI	CAYNNNNRTG	2 cut(s)	261, 810
SmlI	CTYRAG	1 cut(s)	896
SmoI	CTYRAG	1 cut(s)	896
Sse9I	AATT	6 cut(s)	300, 451, 662, 730, 815, 978
SsiI	CCGC	1 cut(s)	516
SspI	AATATT	1 cut(s)	987
SspMI	CTAG	3 cut(s)	326, 368, 756
SstI	GAGCTC	1 cut(s)	8
StyD4I	CCNGG	2 cut(s)	152, 468
StyI	CCWWGG	2 cut(s)	509, 671
TaaI	ACNGT	1 cut(s)	248
TaiI	ACGT	1 cut(s)	78
TaqI	TCGA	5 cut(s)	102, 138, 573, 876, 897
TaqII	GACCGA	1 cut(s)	104
TasI	AATT	6 cut(s)	300, 451, 662, 730, 815, 978
TatI	WGTACW	1 cut(s)	487
Tru1I	TTAA	1 cut(s)	567
Tru9I	TTAA	1 cut(s)	567
TscAI	CASTG	2 cut(s)	433, 850
TseI	GCWGC	5 cut(s)	38, 413, 557, 560, 908
TspDTI	ATGAA	4 cut(s)	357, 724, 828, 984
TspGWI	ACGGA	1 cut(s)	104
TspRI	CASTG	2 cut(s)	433, 850
Tth111I	GACNNNGTC	2 cut(s)	74, 77
VpaK11BI	GGWCC	2 cut(s)	321, 396
XapI	RAATTY	2 cut(s)	662, 730
XhoI	CTCGAG	1 cut(s)	896
XmnI	GAANNNNTTC	2 cut(s)	665, 827
XspI	CTAG	3 cut(s)	326, 368, 756
ZraI	GACGTC	1 cut(s)	76

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.