Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0014032

Physical Location & Seq

Genomic Coordinates Forward (+)

28725240 .. 28729008

Gene Structure 3769 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1207400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1089 bp

ATGGCGAGCTCGAAGACTCTGTTCGCTTTCGGAGCCCTAGCGCTCCTCTTCGCCTCGTCGGTCTACGCCGACGACGTCGTCGTGCTCACGGAGGACAACTTCGAGAAGGAGGTCGGTCAAGATCGCGCCGCTCTCGTCGAGTTCTACGCTCCCTGGTGTGGCCATTGTAAGAAGCTTGCACCAGAGTATGAGAAGCTCGGTTCAAGTTTTAAGAAAGCAAAATCCATTTTAATTGCAAAGGTTGATTGTGATGAGGACAAGGGAGTTTGTGGAAAGTATGGGGTTTCCGGCTATCCGACAATTCAATGGTTTCCTAAAGGGTCCCTAGAACCCAAAAAGTATGAAGGTGGCCGTACTGCCGAAGCTCTTGCTGAGTTTGTGAATAAGGAAGGAGGGACCAATGTGAAGCTTGCTGTAGCCCCATCCCATGTTGTGGTACTTACGCAGGATAACTTTAATGAGGTTGTCCTGGACGAAACAAAAGATGTGCTGGTGGAGTTCTATGCACCATGGTGTGGACATTGCAAATCCCTTGCTCCTACTTATGAGAAGGTTGCCTCAGCATTTAATTTGGAGGACGGTGTAGTGATTGCTAATCTTGATGCTGACAAATACAAGGATTTAGCTGAAAAGTATGGAGTTAGTGGATTTCCCACATTGAAATTTTTCCCAAAGAACAACAAGGAGGGCGAAGAGTATGGTGGCGGCAGAGATTTAGAGGATTTTGTAGGGTTCATTAATGAAAAATCTGGCACCAGCAGAGACGGAAAAGGACAACTTACTTCCAAAGCTGGCGTTCTTGAAAATTTGGACGAATTAGTAAAGGAGTTTGTGAAATCTAGCAACGATGAGAAGAAGGCAATCTTTTCCAAGATAGAAGAGGAAGTTGGGAAACTTGAGGGTTCGGCTGCAAGATACGGTAAGATCTACTTGAAAGCTGCCAAGAACTCTTTGGAGAAAGGTCCTGATTATGCAAAGAATGAAATTCAGCGGCTTGGGCGCATACTCGAAAAGTCTGTCAACCCAACTAAGGCCGACGAGTTCACTCTCAAGAAGAACATTCTATACACCTTCACTTCATCCTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003756 GO:0003824 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005783 GO:0006457 GO:0006950 GO:0007275 GO:0008150 GO:0009505 GO:0009553 GO:0009566 GO:0009567 GO:0009790 GO:0009791 GO:0009793 GO:0009856 GO:0009987 GO:0010035 GO:0010038 GO:0010154 GO:0012505 GO:0016020 GO:0016853 GO:0016860 GO:0016864 GO:0019953 GO:0022414 GO:0030312 GO:0031090 GO:0032501 GO:0032502 GO:0033554 GO:0034976 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0044703 GO:0044706 GO:0046686 GO:0048229 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0048868 GO:0050896 GO:0051704 GO:0051716 GO:0061458 GO:0071944 GO:0098588 GO:0098805 GO:0140096

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

ERp29 Thioredoxin

Protein Analysis

363

Amino Acids

39.78

Weight (kDa)

5.48

Isoelectric Point (pI)

26.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Thioredoxin	PF00085	26 - 128	1.3e-32	Thioredoxin
Thioredoxin_2	PF13098	41 - 125	6.2e-07	Thioredoxin-like domain
OST3_OST6	PF04756	53 - 137	4.2e-08	OST3 / OST6 family, transporter family
Thioredoxin	PF00085	144 - 247	5.9e-32	Thioredoxin
Thioredoxin_2	PF13098	159 - 242	4.7e-07	Thioredoxin-like domain
ERp29	PF07749	265 - 358	6.6e-25	Endoplasmic reticulum protein ERp29, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014032)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47470 AT2G47470 AT2G47470 AT2G47470
fragaria_vesca	FvH4_6g07230
malus_domestica	MD04G1195300.v1.1 MD12G1207400.v1.1
prunus_persica	Prupe.6G315000_v2.0.a1
pyrus_communis	pycom04g17250
rosa_chinensis	RchiOBHm_Chr3g0456861
rosa_laevigata	RLG00000025273
rosa_multiflora	Rmu_sc0000133.1_g000018
rosa_roxburghii	Rroxscaffold_6G00422430
rosa_rugosa	Rorug03G0016400
rosa_samantha	Rh3BG078600 Rh3CG078400
rosa_wichuraiana	Rw3G006590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	77
AatII	GACGTC	1 cut(s)	78
AccB1I	GGYRCC	1 cut(s)	752
AccB7I	CCANNNNNTGG	2 cut(s)	433, 515
AccBSI	CCGCTC	1 cut(s)	131
AccI	GTMKAC	1 cut(s)	63
AccII	CGCG	1 cut(s)	126
AciI	CCGC	3 cut(s)	129, 705, 991
AcoI	YGGCCR	2 cut(s)	160, 349
AcsI	RAATTY	3 cut(s)	662, 805, 984
AcyI	GRCGYC	1 cut(s)	75
AfaI	GTAC	2 cut(s)	355, 438
AfeI	AGCGCT	1 cut(s)	42
AfiI	CCNNNNNNNGG	4 cut(s)	158, 433, 515, 1030
AgsI	TTSAA	5 cut(s)	204, 305, 661, 803, 934
AjnI	CCWGG	2 cut(s)	152, 468
AjuI	GAANNNNNNNTTGG	2 cut(s)	870, 902
AleI	CACNNNNGTG	1 cut(s)	511
AluBI	AGCT	8 cut(s)	9, 175, 196, 365, 409, 626, 791, 938
AluI	AGCT	8 cut(s)	9, 175, 196, 365, 409, 626, 791, 938
Alw21I	GWGCWC	2 cut(s)	11, 87
Alw26I	GTCTC	1 cut(s)	756
Aor51HI	AGCGCT	1 cut(s)	42
AoxI	GGCC	3 cut(s)	160, 349, 1032
ApeKI	GCWGC	2 cut(s)	908, 938
ApoI	RAATTY	3 cut(s)	662, 805, 984
ArsI	GACNNNNNNTTYG	2 cut(s)	1002, 1034
AseI	ATTAAT	1 cut(s)	738
Asp700I	GAANNNNTTC	1 cut(s)	665
AspLEI	GCGC	3 cut(s)	43, 128, 1002
AspS9I	GGNCC	3 cut(s)	321, 396, 962
AvaII	GGWCC	3 cut(s)	321, 396, 962
BalI	TGGCCA	1 cut(s)	162
BanI	GGYRCC	1 cut(s)	752
BanII	GRGCYC	2 cut(s)	11, 37
BbsI	GAAGAC	1 cut(s)	20
Bbv12I	GWGCWC	2 cut(s)	11, 87
BbvCI	CCTCAGC	1 cut(s)	559
BbvI	GCAGC	2 cut(s)	895, 925
BccI	CCATC	1 cut(s)	430
BceAI	ACGGC	1 cut(s)	336
BcgI	CGANNNNNNTGC	2 cut(s)	350, 384
BciT130I	CCWGG	2 cut(s)	154, 470
BcoDI	GTCTC	1 cut(s)	756
BfaI	CTAG	3 cut(s)	38, 326, 840
BfmI	CTRYAG	1 cut(s)	414
BfoI	RGCGCY	1 cut(s)	44
BglII	AGATCT	1 cut(s)	924
BisI	GCNGC	5 cut(s)	129, 706, 909, 939, 992
BlsI	GCNGC	5 cut(s)	130, 707, 910, 940, 993
Bme1390I	CCNGG	2 cut(s)	154, 470
Bme18I	GGWCC	3 cut(s)	321, 396, 962
BmgT120I	GGNCC	3 cut(s)	321, 396, 962
BmiI	GGNNCC	5 cut(s)	34, 322, 323, 397, 754
BmrFI	CCNGG	2 cut(s)	154, 470
BmsI	GCATC	1 cut(s)	592
BpiI	GAAGAC	1 cut(s)	20
Bpu10I	CCTNAGC	1 cut(s)	559
BpuEI	CTTGAG	2 cut(s)	917, 1034
BsaHI	GRCGYC	1 cut(s)	75
BsaJI	CCNNGG	2 cut(s)	152, 509
Bsc4I	CCNNNNNNNGG	4 cut(s)	158, 433, 515, 1030
Bse3DI	GCAATG	1 cut(s)	520
BseBI	CCWGG	2 cut(s)	154, 470
BseDI	CCNNGG	2 cut(s)	152, 509
BseGI	GGATG	2 cut(s)	422, 1079
BseLI	CCNNNNNNNGG	4 cut(s)	158, 433, 515, 1030
BseMI	GCAATG	1 cut(s)	520
BseMII	CTCAG	2 cut(s)	363, 573
BseRI	GAGGAG	1 cut(s)	35
BseXI	GCAGC	2 cut(s)	895, 925
Bsh1236I	CGCG	1 cut(s)	126
BshFI	GGCC	3 cut(s)	162, 351, 1034
BshNI	GGYRCC	1 cut(s)	752
BsiHKAI	GWGCWC	2 cut(s)	11, 87
BsiSI	CCGG	1 cut(s)	288
BslFI	GGGAC	2 cut(s)	307, 409
BslI	CCNNNNNNNGG	4 cut(s)	158, 433, 515, 1030
BsmAI	GTCTC	1 cut(s)	756
BsmBI	CGTCTC	1 cut(s)	756
BsmFI	GGGAC	2 cut(s)	307, 409
BsnI	GGCC	3 cut(s)	162, 351, 1034
Bsp1286I	GDGCHC	3 cut(s)	11, 37, 87
Bsp143I	GATC	2 cut(s)	121, 924
Bsp19I	CCATGG	1 cut(s)	509
BspACI	CCGC	3 cut(s)	129, 705, 991
BspANI	GGCC	3 cut(s)	162, 351, 1034
BspCNI	CTCAG	2 cut(s)	364, 572
BspFNI	CGCG	1 cut(s)	126
BspHI	TCATGA	1 cut(s)	1085
BspLI	GGNNCC	5 cut(s)	34, 322, 323, 397, 754
BspT107I	GGYRCC	1 cut(s)	752
BsrBI	CCGCTC	1 cut(s)	131
BsrDI	GCAATG	1 cut(s)	520
BssECI	CCNNGG	2 cut(s)	152, 509
BssMI	GATC	2 cut(s)	121, 924
BssNI	GRCGYC	1 cut(s)	75
BssT1I	CCWWGG	1 cut(s)	509
Bst2UI	CCWGG	2 cut(s)	154, 470
Bst4CI	ACNGT	2 cut(s)	581, 920
Bst6I	CTCTTC	3 cut(s)	53, 687, 873
BstACI	GRCGYC	1 cut(s)	75
BstC8I	GCNNGC	4 cut(s)	7, 177, 411, 793
BstDEI	CTNAG	3 cut(s)	372, 559, 1029
BstDSI	CCRYGG	1 cut(s)	509
BstF5I	GGATG	2 cut(s)	422, 1079
BstFNI	CGCG	1 cut(s)	126
BstH2I	RGCGCY	1 cut(s)	44
BstHHI	GCGC	3 cut(s)	43, 128, 1002
BstKTI	GATC	2 cut(s)	124, 927
BstMAI	GTCTC	1 cut(s)	756
BstMBI	GATC	2 cut(s)	121, 924
BstMWI	GCNNNNNNNGC	2 cut(s)	32, 997
BstNI	CCWGG	2 cut(s)	154, 470
BstSCI	CCNGG	2 cut(s)	152, 468
BstSFI	CTRYAG	1 cut(s)	414
BstUI	CGCG	1 cut(s)	126
BstV1I	GCAGC	2 cut(s)	895, 925
BstV2I	GAAGAC	1 cut(s)	20
BstX2I	RGATCY	1 cut(s)	924
BstYI	RGATCY	1 cut(s)	924
BsuRI	GGCC	3 cut(s)	162, 351, 1034
BtgI	CCRYGG	1 cut(s)	509
BtsCI	GGATG	2 cut(s)	422, 1079
Cac8I	GCNNGC	4 cut(s)	7, 177, 411, 793
CciI	TCATGA	1 cut(s)	1085
CfoI	GCGC	3 cut(s)	43, 128, 1002
Cfr13I	GGNCC	3 cut(s)	321, 396, 962
Csp6I	GTAC	2 cut(s)	354, 437
CviAII	CATG	3 cut(s)	428, 510, 1086
CviQI	GTAC	2 cut(s)	354, 437
DdeI	CTNAG	3 cut(s)	372, 559, 1029
DpnI	GATC	2 cut(s)	123, 926
DpnII	GATC	2 cut(s)	121, 924
DrdI	GACNNNNNNGTC	1 cut(s)	77
DseDI	GACNNNNNNGTC	1 cut(s)	77
EaeI	YGGCCR	2 cut(s)	160, 349
Eam1104I	CTCTTC	3 cut(s)	53, 687, 873
EarI	CTCTTC	3 cut(s)	53, 687, 873
Ecl136II	GAGCTC	1 cut(s)	9
Eco130I	CCWWGG	1 cut(s)	509
Eco24I	GRGCYC	2 cut(s)	11, 37
Eco47I	GGWCC	3 cut(s)	321, 396, 962
Eco47III	AGCGCT	1 cut(s)	42
Eco53kI	GAGCTC	1 cut(s)	9
EcoICRI	GAGCTC	1 cut(s)	9
EcoO109I	RGGNCCY	2 cut(s)	321, 962
EcoRII	CCWGG	2 cut(s)	152, 468
EcoT14I	CCWWGG	1 cut(s)	509
EcoT38I	GRGCYC	2 cut(s)	11, 37
ErhI	CCWWGG	1 cut(s)	509
Esp3I	CGTCTC	1 cut(s)	756
FaeI	CATG	3 cut(s)	431, 513, 1089
FalI	AAGNNNNNCTT	6 cut(s)	762, 794, 848, 880, 914, 946
FaqI	GGGAC	2 cut(s)	307, 409
FatI	CATG	3 cut(s)	427, 509, 1085
FblI	GTMKAC	1 cut(s)	63
Fnu4HI	GCNGC	5 cut(s)	129, 706, 909, 939, 992
FokI	GGATG	2 cut(s)	409, 1066
FriOI	GRGCYC	2 cut(s)	11, 37
Fsp4HI	GCNGC	5 cut(s)	129, 706, 909, 939, 992
FspBI	CTAG	3 cut(s)	38, 326, 840
GlaI	GCGC	3 cut(s)	42, 127, 1001
GluI	GCNGC	5 cut(s)	129, 706, 909, 939, 992
HaeII	RGCGCY	1 cut(s)	44
HaeIII	GGCC	3 cut(s)	162, 351, 1034
HapII	CCGG	1 cut(s)	288
HhaI	GCGC	3 cut(s)	43, 128, 1002
Hin1I	GRCGYC	1 cut(s)	75
Hin1II	CATG	3 cut(s)	431, 513, 1089
Hin6I	GCGC	3 cut(s)	41, 126, 1000
HinP1I	GCGC	3 cut(s)	41, 126, 1000
HincII	GTYRAC	1 cut(s)	1021
HindII	GTYRAC	1 cut(s)	1021
HindIII	AAGCTT	2 cut(s)	173, 407
HinfI	GANTC	1 cut(s)	16
HpaII	CCGG	1 cut(s)	288
Hpy166II	GTNNAC	4 cut(s)	64, 518, 1021, 1044
Hpy188I	TCNGA	2 cut(s)	32, 297
Hpy188III	TCNNGA	7 cut(s)	103, 119, 599, 800, 965, 1051, 1086
Hpy8I	GTNNAC	4 cut(s)	64, 518, 1021, 1044
Hpy99I	CGWCG	7 cut(s)	61, 74, 77, 80, 83, 140, 1040
HpyAV	CCTTC	6 cut(s)	100, 338, 383, 544, 850, 1081
HpyCH4III	ACNGT	2 cut(s)	581, 920
HpyCH4IV	ACGT	1 cut(s)	75
HpyCH4V	TGCA	6 cut(s)	179, 236, 506, 525, 911, 974
HpyF10VI	GCNNNNNNNGC	2 cut(s)	32, 997
HpyF3I	CTNAG	3 cut(s)	372, 559, 1029
HpySE526I	ACGT	1 cut(s)	75
Hsp92I	GRCGYC	1 cut(s)	75
Hsp92II	CATG	3 cut(s)	431, 513, 1089
HspAI	GCGC	3 cut(s)	41, 126, 1000
KflI	GGGWCCC	1 cut(s)	321
Kzo9I	GATC	2 cut(s)	121, 924
LmnI	GCTCC	4 cut(s)	32, 48, 154, 541
Lsp1109I	GCAGC	2 cut(s)	895, 925
LweI	GCATC	1 cut(s)	592
MaeI	CTAG	3 cut(s)	38, 326, 840
MaeII	ACGT	1 cut(s)	75
MalI	GATC	2 cut(s)	123, 926
MbiI	CCGCTC	1 cut(s)	131
MboI	GATC	2 cut(s)	121, 924
MboII	GAAGA	6 cut(s)	25, 40, 704, 865, 890, 1066
MflI	RGATCY	1 cut(s)	924
MhlI	GDGCHC	3 cut(s)	11, 37, 87
MlsI	TGGCCA	1 cut(s)	162
MluCI	AATT	7 cut(s)	231, 300, 568, 662, 805, 815, 984
MluNI	TGGCCA	1 cut(s)	162
MlyI	GAGTC	1 cut(s)	10
MmeI	TCCRAC	1 cut(s)	320
Mox20I	TGGCCA	1 cut(s)	162
MroXI	GAANNNNTTC	1 cut(s)	665
MscI	TGGCCA	1 cut(s)	162
MseI	TTAA	5 cut(s)	210, 230, 456, 567, 738
MslI	CAYNNNNRTG	2 cut(s)	511, 1084
Msp20I	TGGCCA	1 cut(s)	162
MspA1I	CMGCKG	1 cut(s)	991
MspI	CCGG	1 cut(s)	288
MspR9I	CCNGG	2 cut(s)	154, 470
MvaI	CCWGG	2 cut(s)	154, 470
MvnI	CGCG	1 cut(s)	126
MwoI	GCNNNNNNNGC	2 cut(s)	32, 997
NcoI	CCATGG	1 cut(s)	509
NdeII	GATC	2 cut(s)	121, 924
NlaIII	CATG	3 cut(s)	431, 513, 1089
NlaIV	GGNNCC	5 cut(s)	34, 322, 323, 397, 754
OliI	CACNNNNGTG	1 cut(s)	511
PagI	TCATGA	1 cut(s)	1085
PcsI	WCGNNNNNNNCGW	2 cut(s)	72, 78
PdmI	GAANNNNTTC	1 cut(s)	665
PflFI	GACNNNGTC	2 cut(s)	74, 77
PflMI	CCANNNNNTGG	2 cut(s)	433, 515
PfoI	TCCNGGA	1 cut(s)	468
PkrI	GCNGC	5 cut(s)	130, 707, 910, 940, 993
PleI	GAGTC	1 cut(s)	10
PpsI	GAGTC	1 cut(s)	10
PpuMI	RGGWCCY	2 cut(s)	321, 962
PshBI	ATTAAT	1 cut(s)	738
Psp124BI	GAGCTC	1 cut(s)	11
Psp5II	RGGWCCY	2 cut(s)	321, 962
Psp6I	CCWGG	2 cut(s)	152, 468
PspGI	CCWGG	2 cut(s)	152, 468
PspN4I	GGNNCC	5 cut(s)	34, 322, 323, 397, 754
PspPI	GGNCC	3 cut(s)	321, 396, 962
PspPPI	RGGWCCY	2 cut(s)	321, 962
PsrI	GAACNNNNNNTAC	2 cut(s)	1049, 1081
PsuI	RGATCY	1 cut(s)	924
PsyI	GACNNNGTC	2 cut(s)	74, 77
RsaI	GTAC	2 cut(s)	355, 438
RsaNI	GTAC	2 cut(s)	354, 437
RseI	CAYNNNNRTG	2 cut(s)	511, 1084
SacI	GAGCTC	1 cut(s)	11
SaqAI	TTAA	5 cut(s)	210, 230, 456, 567, 738
SatI	GCNGC	5 cut(s)	129, 706, 909, 939, 992
Sau3AI	GATC	2 cut(s)	121, 924
Sau96I	GGNCC	3 cut(s)	321, 396, 962
SchI	GAGTC	1 cut(s)	10
ScrFI	CCNGG	2 cut(s)	154, 470
SduI	GDGCHC	3 cut(s)	11, 37, 87
SfaNI	GCATC	1 cut(s)	592
SfcI	CTRYAG	1 cut(s)	414
SinI	GGWCC	3 cut(s)	321, 396, 962
SmiMI	CAYNNNNRTG	2 cut(s)	511, 1084
SmlI	CTYRAG	2 cut(s)	896, 1049
SmoI	CTYRAG	2 cut(s)	896, 1049
Sse9I	AATT	7 cut(s)	231, 300, 568, 662, 805, 815, 984
SsiI	CCGC	3 cut(s)	129, 705, 991
SspMI	CTAG	3 cut(s)	38, 326, 840
SstI	GAGCTC	1 cut(s)	11
StyD4I	CCNGG	2 cut(s)	152, 468
StyI	CCWWGG	1 cut(s)	509
TaaI	ACNGT	2 cut(s)	581, 920
TaiI	ACGT	1 cut(s)	78
TaqI	TCGA	4 cut(s)	11, 102, 138, 1008
TaqII	GACCGA	2 cut(s)	49, 104
TasI	AATT	7 cut(s)	231, 300, 568, 662, 805, 815, 984
TauI	GCSGC	3 cut(s)	131, 708, 994
Tru1I	TTAA	5 cut(s)	210, 230, 456, 567, 738
Tru9I	TTAA	5 cut(s)	210, 230, 456, 567, 738
TseI	GCWGC	2 cut(s)	908, 938
TspDTI	ATGAA	5 cut(s)	357, 724, 756, 996, 1068
TspGWI	ACGGA	2 cut(s)	104, 780
Tth111I	GACNNNGTC	2 cut(s)	74, 77
Van91I	CCANNNNNTGG	2 cut(s)	433, 515
VpaK11BI	GGWCC	3 cut(s)	321, 396, 962
VspI	ATTAAT	1 cut(s)	738
XapI	RAATTY	3 cut(s)	662, 805, 984
XcmI	CCANNNNNNNNNTGG	1 cut(s)	949
XmiI	GTMKAC	1 cut(s)	63
XmnI	GAANNNNTTC	1 cut(s)	665
XspI	CTAG	3 cut(s)	38, 326, 840
ZraI	GACGTC	1 cut(s)	76

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.