pycom04g17250

Belongs to the protein disulfide isomerase family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr4
Physical Location & Seq
Forward (+)
19700333 .. 19703788
3456 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom04g17250.1

Sequence Viewer

Length: 1185 bp
ATGATTTGCCAGATTAAAAAAAGCAGTGTCCAGTACTCAGAGCGAGCAGCTGGACTTTCCTCAAATCAACCGACTCCCTTCAGAAAGTTTGAAACGATGGCGAGCTCGAAGACTCTGATCGCTTTCGGAGCCCTAGCCCTGCTCTTTGCCTCGTCGGCCTTCGCAGACGACGTCGTTGTGCTCACGGAGGACAACTTCGAGAAGGAGGTCGGTCAAGATCGCGCCGCTCTCGTCGAGTTCTACGCTCCCTGGTGTGGTCACTGTAAGAAGCTTGCACCGGAGTATGAGAAGCTAGGTTCAAGTTTTAAGAAAGCAAAATCGATTTTAATCGCAAAGATTGATTGTGATGAGCACAAGGGCGTTTGTGGCAAGTTTGGAGTTTCCGGCTACCCCACAATTCAATGGTTTCCTAAAGGGTCCCTAGAACCCAAAAAGTATGAAGGTGCCCGTACTGCTGAAGCTCTTGCTGAGTTTGTGAATAAGGAAGGAGGGACCAATGTGAAGATTGCTGCAGACCCATCCCATGTTGTGGTACTTACACAGGATAACTTTAATGAGGTTGTCCTGGATGAAACAAAAGATGTGCTGGTGGAGTTCTATGCACCATGGTGTGGACATTGCAAATCCCTTGCTCCTACTTATGAGAAGGTTGCCTCAGCATTTAAGTTGGAGGACGGCGTAGTGATTGCTAATCTTGATGCTGACAAATACAAGGATTTAGCTGAAAAGTACGGTGTTAGTGGATATCCCACATTGAAATTCTTCCCAAAGAACAAGAAGGAGGGTGAAGAGTATGGTGGCGGCAGAGATTTGGAGGATTTTGTAGATTTCATTAATGAGAAATCTGGCACCAGCAGAGACGCAAAAGGACAACTTACTTCCAAAGCTGGCATTGTTGAAAATTTGGACGAATTAGTAAAGGAGTTTGTGAAATCTAGCAACGATGAGAAGAAGGCAATATTTTCCAAGATAGAAGAGGAAGTTGGGAAACTTGAGGGTTCGGCTGCAAGATACGGTAACATCTACTTGAAAGCCGCCAAGAAGTCTTTGGAGAAAGGTGCTGATTATGCGAAGAACGAAATTCAGCGGCTTGAGCGCATACTTGAAAAGTCTGTCAACCCAACAAAGGCCGATGAGTTCACTCTCAAGAAGAACATTCTATACACCTTTGCTTCATCTTCATGA

Protein Analysis

395

Amino Acids

43.5

Weight (kDa)

6.03

Isoelectric Point (pI)

25.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Thioredoxin PF00085 58 - 160 9e-33 Thioredoxin
Thioredoxin_2 PF13098 73 - 157 1.3e-06 Thioredoxin-like domain
OST3_OST6 PF04756 85 - 174 8.2e-09 OST3 / OST6 family, transporter family
OST3_OST6 PF04756 175 - 283 4.3e-06 OST3 / OST6 family, transporter family
Thioredoxin PF00085 176 - 279 7.2e-33 Thioredoxin
Thioredoxin_2 PF13098 191 - 275 1.2e-06 Thioredoxin-like domain
ERp29 PF07749 297 - 390 1.3e-25 Endoplasmic reticulum protein ERp29, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0014032)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G47470 AT2G47470 AT2G47470 AT2G47470
fragaria_vesca FvH4_6g07230
malus_domestica MD04G1195300.v1.1 MD12G1207400.v1.1
prunus_persica Prupe.6G315000_v2.0.a1
pyrus_communis pycom04g17250
rosa_chinensis RchiOBHm_Chr3g0456861
rosa_laevigata RLG00000025273
rosa_multiflora Rmu_sc0000133.1_g000018
rosa_roxburghii Rroxscaffold_6G00422430
rosa_rugosa Rorug03G0016400
rosa_samantha Rh3BG078600 Rh3CG078400
rosa_wichuraiana Rw3G006590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 174
AccB1I GGYRCC 2 cut(s) 443, 848
AccB7I CCANNNNNTGG 2 cut(s) 529, 611
AccBSI CCGCTC 1 cut(s) 227
AccII CGCG 1 cut(s) 222
AciI CCGC 4 cut(s) 225, 801, 1035, 1087
AcsI RAATTY 3 cut(s) 758, 901, 1080
AcuI CTGAAG 2 cut(s) 64, 477
AcyI GRCGYC 1 cut(s) 171
AfaI GTAC 4 cut(s) 35, 451, 534, 731
AfiI CCNNNNNNNGG 4 cut(s) 254, 529, 611, 1126
AgsI TTSAA 7 cut(s) 92, 300, 401, 757, 899, 1030, 1106
AjnI CCWGG 2 cut(s) 248, 564
AjuI GAANNNNNNNTTGG 2 cut(s) 966, 998
AleI CACNNNNGTG 1 cut(s) 607
AluBI AGCT 7 cut(s) 50, 105, 271, 292, 461, 722, 887
AluI AGCT 7 cut(s) 50, 105, 271, 292, 461, 722, 887
Alw21I GWGCWC 3 cut(s) 107, 183, 354
Alw26I GTCTC 1 cut(s) 852
AoxI GGCC 2 cut(s) 156, 1128
ApeKI GCWGC 3 cut(s) 47, 509, 1004
ApoI RAATTY 3 cut(s) 758, 901, 1080
AseI ATTAAT 1 cut(s) 834
Asp700I GAANNNNTTC 1 cut(s) 761
AspLEI GCGC 2 cut(s) 224, 1098
AspS9I GGNCC 2 cut(s) 417, 492
AsuHPI GGTGA 1 cut(s) 797
AvaII GGWCC 2 cut(s) 417, 492
BaeGI GKGCMC 1 cut(s) 448
BanI GGYRCC 2 cut(s) 443, 848
BanII GRGCYC 2 cut(s) 107, 133
BbsI GAAGAC 1 cut(s) 116
Bbv12I GWGCWC 3 cut(s) 107, 183, 354
BbvCI CCTCAGC 1 cut(s) 655
BbvI GCAGC 3 cut(s) 59, 496, 991
BccI CCATC 2 cut(s) 91, 526
BceAI ACGGC 1 cut(s) 691
BciT130I CCWGG 2 cut(s) 250, 566
BcoDI GTCTC 1 cut(s) 852
BfaI CTAG 4 cut(s) 134, 293, 422, 936
BfmI CTRYAG 1 cut(s) 510
BglI GCCNNNNNGGC 1 cut(s) 155
BisI GCNGC 7 cut(s) 48, 225, 510, 802, 1005, 1035, 1088
BlsI GCNGC 7 cut(s) 49, 226, 511, 803, 1006, 1036, 1089
BmcAI AGTACT 1 cut(s) 35
Bme1390I CCNGG 2 cut(s) 250, 566
Bme18I GGWCC 2 cut(s) 417, 492
BmgT120I GGNCC 2 cut(s) 417, 492
BmiI GGNNCC 6 cut(s) 130, 418, 419, 445, 493, 850
BmrFI CCNGG 2 cut(s) 250, 566
BmsI GCATC 1 cut(s) 688
BpiI GAAGAC 1 cut(s) 116
Bpu10I CCTNAGC 1 cut(s) 655
BpuEI CTTGAG 3 cut(s) 1013, 1112, 1130
Bsa29I ATCGAT 1 cut(s) 320
BsaBI GATNNNNATC 1 cut(s) 326
BsaHI GRCGYC 1 cut(s) 171
BsaJI CCNNGG 2 cut(s) 248, 605
BsaWI WCCGGW 1 cut(s) 277
Bsc4I CCNNNNNNNGG 4 cut(s) 254, 529, 611, 1126
Bse1I ACTGG 1 cut(s) 31
Bse3DI GCAATG 1 cut(s) 616
Bse8I GATNNNNATC 1 cut(s) 326
BseBI CCWGG 2 cut(s) 250, 566
BseCI ATCGAT 1 cut(s) 320
BseDI CCNNGG 2 cut(s) 248, 605
BseGI GGATG 2 cut(s) 518, 574
BseJI GATNNNNATC 1 cut(s) 326
BseLI CCNNNNNNNGG 4 cut(s) 254, 529, 611, 1126
BseMI GCAATG 1 cut(s) 616
BseMII CTCAG 3 cut(s) 51, 459, 669
BseNI ACTGG 1 cut(s) 31
BseSI GKGCMC 1 cut(s) 448
BseXI GCAGC 3 cut(s) 59, 496, 991
Bsh1236I CGCG 1 cut(s) 222
BshFI GGCC 2 cut(s) 158, 1130
BshNI GGYRCC 2 cut(s) 443, 848
BshVI ATCGAT 1 cut(s) 320
BsiHKAI GWGCWC 3 cut(s) 107, 183, 354
BsiSI CCGG 2 cut(s) 278, 384
BslFI GGGAC 2 cut(s) 403, 505
BslI CCNNNNNNNGG 4 cut(s) 254, 529, 611, 1126
BsmAI GTCTC 1 cut(s) 852
BsmBI CGTCTC 1 cut(s) 852
BsmFI GGGAC 2 cut(s) 403, 505
BsnI GGCC 2 cut(s) 158, 1130
Bsp1286I GDGCHC 5 cut(s) 107, 133, 183, 354, 448
Bsp143I GATC 2 cut(s) 117, 217
Bsp19I CCATGG 1 cut(s) 605
BspACI CCGC 4 cut(s) 225, 801, 1035, 1087
BspANI GGCC 2 cut(s) 158, 1130
BspCNI CTCAG 3 cut(s) 50, 460, 668
BspDI ATCGAT 1 cut(s) 320
BspFNI CGCG 1 cut(s) 222
BspHI TCATGA 1 cut(s) 1181
BspLI GGNNCC 6 cut(s) 130, 418, 419, 445, 493, 850
BspMAI CTGCAG 1 cut(s) 514
BspT107I GGYRCC 2 cut(s) 443, 848
BsrBI CCGCTC 1 cut(s) 227
BsrDI GCAATG 1 cut(s) 616
BsrI ACTGG 1 cut(s) 31
BssECI CCNNGG 2 cut(s) 248, 605
BssMI GATC 2 cut(s) 117, 217
BssNI GRCGYC 1 cut(s) 171
BssT1I CCWWGG 1 cut(s) 605
Bst2UI CCWGG 2 cut(s) 250, 566
Bst4CI ACNGT 3 cut(s) 263, 734, 1016
Bst6I CTCTTC 2 cut(s) 783, 969
BstACI GRCGYC 1 cut(s) 171
BstC8I GCNNGC 4 cut(s) 45, 103, 273, 889
BstDEI CTNAG 3 cut(s) 37, 468, 655
BstDSI CCRYGG 1 cut(s) 605
BstF5I GGATG 2 cut(s) 518, 574
BstFNI CGCG 1 cut(s) 222
BstHHI GCGC 2 cut(s) 224, 1098
BstKTI GATC 2 cut(s) 120, 220
BstMAI GTCTC 1 cut(s) 852
BstMBI GATC 2 cut(s) 117, 217
BstMWI GCNNNNNNNGC 6 cut(s) 128, 155, 366, 452, 1067, 1093
BstNI CCWGG 2 cut(s) 250, 566
BstSCI CCNGG 2 cut(s) 248, 564
BstSFI CTRYAG 1 cut(s) 510
BstSLI GKGCMC 1 cut(s) 448
BstUI CGCG 1 cut(s) 222
BstV1I GCAGC 3 cut(s) 59, 496, 991
BstV2I GAAGAC 1 cut(s) 116
Bsu15I ATCGAT 1 cut(s) 320
BsuRI GGCC 2 cut(s) 158, 1130
BsuTUI ATCGAT 1 cut(s) 320
BtgI CCRYGG 1 cut(s) 605
BtsCI GGATG 2 cut(s) 518, 574
BtsI GCAGTG 1 cut(s) 31
BtsIMutI CAGTG 2 cut(s) 31, 259
Cac8I GCNNGC 4 cut(s) 45, 103, 273, 889
CciI TCATGA 1 cut(s) 1181
CfoI GCGC 2 cut(s) 224, 1098
Cfr13I GGNCC 2 cut(s) 417, 492
ClaI ATCGAT 1 cut(s) 320
CseI GACGC 1 cut(s) 869
Csp6I GTAC 4 cut(s) 34, 450, 533, 730
CviAII CATG 3 cut(s) 524, 606, 1182
CviQI GTAC 4 cut(s) 34, 450, 533, 730
DdeI CTNAG 3 cut(s) 37, 468, 655
DpnI GATC 2 cut(s) 119, 219
DpnII GATC 2 cut(s) 117, 217
Eam1104I CTCTTC 2 cut(s) 783, 969
EarI CTCTTC 2 cut(s) 783, 969
Ecl136II GAGCTC 1 cut(s) 105
Eco130I CCWWGG 1 cut(s) 605
Eco24I GRGCYC 2 cut(s) 107, 133
Eco32I GATATC 1 cut(s) 746
Eco47I GGWCC 2 cut(s) 417, 492
Eco53kI GAGCTC 1 cut(s) 105
Eco57I CTGAAG 2 cut(s) 64, 477
EcoICRI GAGCTC 1 cut(s) 105
EcoO109I RGGNCCY 1 cut(s) 417
EcoRII CCWGG 2 cut(s) 248, 564
EcoRV GATATC 1 cut(s) 746
EcoT14I CCWWGG 1 cut(s) 605
EcoT38I GRGCYC 2 cut(s) 107, 133
ErhI CCWWGG 1 cut(s) 605
Esp3I CGTCTC 1 cut(s) 852
FaeI CATG 3 cut(s) 527, 609, 1185
FalI AAGNNNNNCTT 2 cut(s) 858, 890
FaqI GGGAC 2 cut(s) 403, 505
FatI CATG 3 cut(s) 523, 605, 1181
Fnu4HI GCNGC 7 cut(s) 48, 225, 510, 802, 1005, 1035, 1088
FokI GGATG 2 cut(s) 505, 581
FriOI GRGCYC 2 cut(s) 107, 133
Fsp4HI GCNGC 7 cut(s) 48, 225, 510, 802, 1005, 1035, 1088
FspBI CTAG 4 cut(s) 134, 293, 422, 936
GlaI GCGC 2 cut(s) 223, 1097
GluI GCNGC 7 cut(s) 48, 225, 510, 802, 1005, 1035, 1088
HaeIII GGCC 2 cut(s) 158, 1130
HapII CCGG 2 cut(s) 278, 384
HgaI GACGC 1 cut(s) 869
HhaI GCGC 2 cut(s) 224, 1098
Hin1I GRCGYC 1 cut(s) 171
Hin1II CATG 3 cut(s) 527, 609, 1185
Hin6I GCGC 2 cut(s) 222, 1096
HinP1I GCGC 2 cut(s) 222, 1096
HincII GTYRAC 1 cut(s) 1117
HindII GTYRAC 1 cut(s) 1117
HindIII AAGCTT 1 cut(s) 269
HinfI GANTC 2 cut(s) 73, 112
HpaII CCGG 2 cut(s) 278, 384
HphI GGTGA 1 cut(s) 797
Hpy166II GTNNAC 3 cut(s) 614, 1117, 1140
Hpy188I TCNGA 4 cut(s) 40, 83, 117, 128
Hpy188III TCNNGA 5 cut(s) 199, 215, 695, 1147, 1182
Hpy8I GTNNAC 3 cut(s) 614, 1117, 1140
Hpy99I CGWCG 4 cut(s) 157, 173, 176, 236
HpyAV CCTTC 8 cut(s) 88, 169, 196, 434, 479, 640, 772, 946
HpyCH4III ACNGT 3 cut(s) 263, 734, 1016
HpyCH4IV ACGT 1 cut(s) 171
HpyCH4V TGCA 5 cut(s) 275, 512, 602, 621, 1007
HpyF10VI GCNNNNNNNGC 6 cut(s) 128, 155, 366, 452, 1067, 1093
HpyF3I CTNAG 3 cut(s) 37, 468, 655
HpySE526I ACGT 1 cut(s) 171
Hsp92I GRCGYC 1 cut(s) 171
Hsp92II CATG 3 cut(s) 527, 609, 1185
HspAI GCGC 2 cut(s) 222, 1096
KflI GGGWCCC 1 cut(s) 417
Kzo9I GATC 2 cut(s) 117, 217
LmnI GCTCC 3 cut(s) 128, 250, 637
Lsp1109I GCAGC 3 cut(s) 59, 496, 991
LweI GCATC 1 cut(s) 688
MaeI CTAG 4 cut(s) 134, 293, 422, 936
MaeII ACGT 1 cut(s) 171
MaeIII GTNAC 2 cut(s) 257, 1016
MalI GATC 2 cut(s) 119, 219
MbiI CCGCTC 1 cut(s) 227
MboI GATC 2 cut(s) 117, 217
MboII GAAGA 9 cut(s) 121, 514, 754, 800, 961, 986, 1084, 1162, 1170
MhlI GDGCHC 5 cut(s) 107, 133, 183, 354, 448
MluCI AATT 5 cut(s) 396, 758, 901, 911, 1080
MlyI GAGTC 2 cut(s) 67, 106
MmeI TCCRAC 1 cut(s) 648
MroXI GAANNNNTTC 1 cut(s) 761
MseI TTAA 6 cut(s) 15, 306, 326, 552, 663, 834
MslI CAYNNNNRTG 2 cut(s) 607, 1180
MspA1I CMGCKG 2 cut(s) 50, 1087
MspI CCGG 2 cut(s) 278, 384
MspR9I CCNGG 2 cut(s) 250, 566
MvaI CCWGG 2 cut(s) 250, 566
MvnI CGCG 1 cut(s) 222
MwoI GCNNNNNNNGC 6 cut(s) 128, 155, 366, 452, 1067, 1093
NcoI CCATGG 1 cut(s) 605
NdeII GATC 2 cut(s) 117, 217
NlaIII CATG 3 cut(s) 527, 609, 1185
NlaIV GGNNCC 6 cut(s) 130, 418, 419, 445, 493, 850
NmuCI GTSAC 1 cut(s) 257
OliI CACNNNNGTG 1 cut(s) 607
PagI TCATGA 1 cut(s) 1181
PcsI WCGNNNNNNNCGW 1 cut(s) 168
PdmI GAANNNNTTC 1 cut(s) 761
PflFI GACNNNGTC 1 cut(s) 170
PflMI CCANNNNNTGG 2 cut(s) 529, 611
PfoI TCCNGGA 1 cut(s) 564
PkrI GCNGC 7 cut(s) 49, 226, 511, 803, 1006, 1036, 1089
PleI GAGTC 2 cut(s) 67, 106
PpsI GAGTC 2 cut(s) 67, 106
PpuMI RGGWCCY 1 cut(s) 417
PshBI ATTAAT 1 cut(s) 834
Psp124BI GAGCTC 1 cut(s) 107
Psp5II RGGWCCY 1 cut(s) 417
Psp6I CCWGG 2 cut(s) 248, 564
PspGI CCWGG 2 cut(s) 248, 564
PspN4I GGNNCC 6 cut(s) 130, 418, 419, 445, 493, 850
PspPI GGNCC 2 cut(s) 417, 492
PspPPI RGGWCCY 1 cut(s) 417
PsrI GAACNNNNNNTAC 2 cut(s) 1145, 1177
PstI CTGCAG 1 cut(s) 514
PsyI GACNNNGTC 1 cut(s) 170
PvuII CAGCTG 1 cut(s) 50
RsaI GTAC 4 cut(s) 35, 451, 534, 731
RsaNI GTAC 4 cut(s) 34, 450, 533, 730
RseI CAYNNNNRTG 2 cut(s) 607, 1180
SacI GAGCTC 1 cut(s) 107
SaqAI TTAA 6 cut(s) 15, 306, 326, 552, 663, 834
SatI GCNGC 7 cut(s) 48, 225, 510, 802, 1005, 1035, 1088
Sau3AI GATC 2 cut(s) 117, 217
Sau96I GGNCC 2 cut(s) 417, 492
ScaI AGTACT 1 cut(s) 35
SchI GAGTC 2 cut(s) 67, 106
ScrFI CCNGG 2 cut(s) 250, 566
SduI GDGCHC 5 cut(s) 107, 133, 183, 354, 448
SfaNI GCATC 1 cut(s) 688
SfcI CTRYAG 1 cut(s) 510
SinI GGWCC 2 cut(s) 417, 492
SmiMI CAYNNNNRTG 2 cut(s) 607, 1180
SmlI CTYRAG 3 cut(s) 992, 1091, 1145
SmoI CTYRAG 3 cut(s) 992, 1091, 1145
Sse9I AATT 5 cut(s) 396, 758, 901, 911, 1080
SsiI CCGC 4 cut(s) 225, 801, 1035, 1087
SspI AATATT 1 cut(s) 960
SspMI CTAG 4 cut(s) 134, 293, 422, 936
SstI GAGCTC 1 cut(s) 107
StyD4I CCNGG 2 cut(s) 248, 564
StyI CCWWGG 1 cut(s) 605
TaaI ACNGT 3 cut(s) 263, 734, 1016
TaiI ACGT 1 cut(s) 174
TaqI TCGA 4 cut(s) 107, 198, 234, 320
TaqII GACCGA 1 cut(s) 200
TasI AATT 5 cut(s) 396, 758, 901, 911, 1080
TatI WGTACW 1 cut(s) 33
TauI GCSGC 4 cut(s) 227, 804, 1037, 1090
Tru1I TTAA 6 cut(s) 15, 306, 326, 552, 663, 834
Tru9I TTAA 6 cut(s) 15, 306, 326, 552, 663, 834
TscAI CASTG 2 cut(s) 31, 266
TseFI GTSAC 1 cut(s) 257
TseI GCWGC 3 cut(s) 47, 509, 1004
Tsp45I GTSAC 1 cut(s) 257
TspDTI ATGAA 5 cut(s) 453, 585, 820, 1164, 1170
TspGWI ACGGA 1 cut(s) 200
TspRI CASTG 2 cut(s) 31, 266
Tth111I GACNNNGTC 1 cut(s) 170
Van91I CCANNNNNTGG 2 cut(s) 529, 611
VpaK11BI GGWCC 2 cut(s) 417, 492
VspI ATTAAT 1 cut(s) 834
XapI RAATTY 3 cut(s) 758, 901, 1080
XcmI CCANNNNNNNNNTGG 1 cut(s) 1045
XmnI GAANNNNTTC 1 cut(s) 761
XspI CTAG 4 cut(s) 134, 293, 422, 936
ZraI GACGTC 1 cut(s) 172
ZrmI AGTACT 1 cut(s) 35
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.