Rorug03G0016400

Belongs to the protein disulfide isomerase family

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
Physical Location & Seq
Forward (+)
1300028 .. 1304226
4199 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0016400.1

Sequence Viewer

Length: 1494 bp
ATGAGGTATGAGTTGGCGGAAGAGTGCGCAGATGACGATGATGCAAAGCTAGGAATTTCTGAGTTAAGGAGTGCTGTTCTTCAGGAACTGAAAATGCATAATTCATTCGTGCAGGAATGGGGTTTAGATGCTAAGGACATCTCTATCAGCTCTGCAGCAGTAAAGTACACAGAATTCTTATTGGCAACAGCCTCTGGTAAAGTTGAAGGAGTAAAAGGCCCTGGTAAACTTGCGACTCCATTTGAAAGAACCAAAGTTGCTGCTTACACCCTTGGTGCCATGACTCCTTGCATGAGATTGTATGCCTTTATAGGTAAGGAGTTCAAGGCACTTCTAGATCCCAAAGACGGCACTCATCCATACAAGAAGTGGATCGACAATTATTCTTCCGAAAGTTTTCAGGCATCAGCTGTGCAAACTGAAGAGTTGCTGGATAAGCTAAGTGTCTCTTTGACTGGCGAGGAGCTTGACATCATTGAAAAGCTTTATCATCAAGCCATGAAACTTGAGATAGAGTTCTTTTCAGCCCAGTCACTTCTTCAACCAACTGTAGTTCCTCTTATCAAAGATCATGACTCTGCAAAAGATCACCTCATGATATTTTCAGATTTTGATTTGACTTGTACTGTTGTTGATTCCTCTGCCATTTTGGCTGAAATTGCAATAGTAACTGCCCCAAAACCAGATCAAAATCAATCTGAAGATCAGATTACGCGGATGTCATCGGCTGATCTCAGAAATACATGGTGCCTTCTTTCCAAGCAGTACACAGAAGAGTACGAGCAATGCATAGAAAGCATTATTCCTACTAAAAGAGCGGAGTTTGTCTATAACAATCTGCATAAAGCACTCGAGCAACTTTCAGAGTTCGAGAAAAAGGCAAACAATAGAGTGATAGAGTCAGGGGTTCTGAAGGGTCTTAATATTGAAGATATAAAAAGAGCTGGTGAACGTCTCATTCTTCAAGATGGTTGTATTGATTTCTTCAAGAAAATTATCAAAAGTGATAACTTGAACGCAAATGTTCATGTTCTTTCATATTGTTGGTGTGGTGATCTTATTAGGTCAGCTTTTTCATCAGGGGGTTTACATGAACCAAATGTTCATGCAAATGAGTTCACATTTGAAGAATCTATTTCCACTGGTAAAATTGTTAAGAAGGTGGAGTCTCCTATTGACAAGGTTCAAGCTTTCAGAGATATTATAAAAAGTTGTCAAAGTGACAGGAAGAACTTGACTATTTACATTGGAGACTCGGTGGGTGACTTACTATGCCTCCTGGAGGCAGATATAGGAATTGTCATAGGGTCAAGCTCAAGCCTGAGGAGAGTGGGGACTCAATTCGGTGTTTCTTTTGTTCCACTGTTTCCTGGTTTAGTTAAGAAACAAAAAGAATGCGTTGAAGGAAGGTCTTCTAATTGGAAAGGGTTAACTGGCATTCTTTATACAGCATCTAGTTGGGCTGAAATACATGCCTTCATTTTGGGGTATTAA

Protein Analysis

497

Amino Acids

55.36

Weight (kDa)

5.24

Isoelectric Point (pI)

45.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TENA_THI-4 PF03070 86 - 176 3.5e-09 TENA/THI-4/PQQC family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1205
Acc16I TGCGCA 1 cut(s) 28
AccB1I GGYRCC 2 cut(s) 275, 747
AccBSI CCGCTC 1 cut(s) 818
AccII CGCG 1 cut(s) 715
AciI CCGC 3 cut(s) 17, 715, 818
AclWI GGATC 2 cut(s) 332, 380
AcsI RAATTY 2 cut(s) 54, 173
AcuI CTGAAG 4 cut(s) 65, 441, 720, 932
AfaI GTAC 4 cut(s) 167, 625, 767, 779
AfiI CCNNNNNNNGG 2 cut(s) 347, 1282
AjnI CCWGG 3 cut(s) 220, 1278, 1369
Alw26I GTCTC 4 cut(s) 451, 959, 1173, 1245
AlwI GGATC 2 cut(s) 332, 380
AlwNI CAGNNNCTG 2 cut(s) 88, 194
Ama87I CYCGRG 1 cut(s) 851
AoxI GGCC 1 cut(s) 217
ApeKI GCWGC 2 cut(s) 155, 260
ApoI RAATTY 2 cut(s) 54, 173
Asp700I GAANNNNTTC 2 cut(s) 396, 1411
AspLEI GCGC 1 cut(s) 29
AspS9I GGNCC 1 cut(s) 218
AsuHPI GGTGA 4 cut(s) 581, 959, 1064, 1274
AvaI CYCGRG 1 cut(s) 851
AxyI CCTNAGG 1 cut(s) 1322
BanI GGYRCC 2 cut(s) 275, 747
BbsI GAAGAC 1 cut(s) 1404
BbvI GCAGC 2 cut(s) 167, 247
BccI CCATC 1 cut(s) 962
BceAI ACGGC 1 cut(s) 364
BciT130I CCWGG 3 cut(s) 222, 1280, 1371
BcoDI GTCTC 4 cut(s) 451, 959, 1173, 1245
BfaI CTAG 3 cut(s) 50, 335, 1455
BfmI CTRYAG 2 cut(s) 153, 549
BglI GCCNNNNNGGC 1 cut(s) 650
BisI GCNGC 2 cut(s) 156, 261
BlsI GCNGC 2 cut(s) 157, 262
Bme1390I CCNGG 3 cut(s) 222, 1280, 1371
BmeT110I CYCGRG 1 cut(s) 851
BmgT120I GGNCC 1 cut(s) 218
BmiI GGNNCC 2 cut(s) 277, 749
BmrFI CCNGG 3 cut(s) 222, 1280, 1371
BmrI ACTGGG 1 cut(s) 523
BmsI GCATC 4 cut(s) 31, 118, 413, 1460
BmuI ACTGGG 1 cut(s) 523
BpiI GAAGAC 1 cut(s) 1404
BpmI CTGGAG 1 cut(s) 1301
Bpu10I CCTNAGC 1 cut(s) 132
BpuEI CTTGAG 2 cut(s) 527, 1300
BsaBI GATNNNNATC 1 cut(s) 690
BsaJI CCNNGG 2 cut(s) 220, 271
BsaXI ACNNNNNCTCC 4 cut(s) 1242, 1260, 1272, 1290
Bsc4I CCNNNNNNNGG 2 cut(s) 347, 1282
Bse1I ACTGG 4 cut(s) 460, 529, 1147, 1438
Bse21I CCTNAGG 1 cut(s) 1322
Bse3DI GCAATG 1 cut(s) 791
Bse8I GATNNNNATC 1 cut(s) 690
BseBI CCWGG 3 cut(s) 222, 1280, 1371
BseDI CCNNGG 2 cut(s) 220, 271
BseGI GGATG 2 cut(s) 355, 723
BseJI GATNNNNATC 1 cut(s) 690
BseLI CCNNNNNNNGG 2 cut(s) 347, 1282
BseMI GCAATG 1 cut(s) 791
BseMII CTCAG 3 cut(s) 51, 748, 1313
BseNI ACTGG 4 cut(s) 460, 529, 1147, 1438
BseRI GAGGAG 2 cut(s) 476, 1339
BseXI GCAGC 2 cut(s) 167, 247
BsgI GTGCAG 1 cut(s) 131
Bsh1236I CGCG 1 cut(s) 715
BshFI GGCC 1 cut(s) 219
BshNI GGYRCC 2 cut(s) 275, 747
BsiHKCI CYCGRG 1 cut(s) 851
BslFI GGGAC 1 cut(s) 1348
BslI CCNNNNNNNGG 2 cut(s) 347, 1282
BsmAI GTCTC 4 cut(s) 451, 959, 1173, 1245
BsmBI CGTCTC 1 cut(s) 959
BsmFI GGGAC 1 cut(s) 1348
BsmI GAATGC 2 cut(s) 1400, 1437
BsnI GGCC 1 cut(s) 219
BsoBI CYCGRG 1 cut(s) 851
Bsp143I GATC 8 cut(s) 337, 372, 568, 586, 685, 703, 730, 1054
BspACI CCGC 3 cut(s) 17, 715, 818
BspANI GGCC 1 cut(s) 219
BspCNI CTCAG 3 cut(s) 52, 747, 1314
BspFNI CGCG 1 cut(s) 715
BspHI TCATGA 2 cut(s) 571, 594
BspLI GGNNCC 2 cut(s) 277, 749
BspMAI CTGCAG 1 cut(s) 157
BspPI GGATC 2 cut(s) 332, 380
BspT107I GGYRCC 2 cut(s) 275, 747
BsrBI CCGCTC 1 cut(s) 818
BsrDI GCAATG 1 cut(s) 791
BsrI ACTGG 4 cut(s) 460, 529, 1147, 1438
BssECI CCNNGG 2 cut(s) 220, 271
BssMI GATC 8 cut(s) 337, 372, 568, 586, 685, 703, 730, 1054
BssT1I CCWWGG 1 cut(s) 271
Bst2UI CCWGG 3 cut(s) 222, 1280, 1371
Bst4CI ACNGT 3 cut(s) 550, 628, 1365
Bst6I CTCTTC 3 cut(s) 15, 417, 768
BstDEI CTNAG 5 cut(s) 60, 132, 440, 734, 1322
BstENI CCTNNNNNAGG 1 cut(s) 1280
BstF5I GGATG 2 cut(s) 355, 723
BstFNI CGCG 1 cut(s) 715
BstHHI GCGC 1 cut(s) 29
BstKTI GATC 8 cut(s) 340, 375, 571, 589, 688, 706, 733, 1057
BstMAI GTCTC 4 cut(s) 451, 959, 1173, 1245
BstMBI GATC 8 cut(s) 337, 372, 568, 586, 685, 703, 730, 1054
BstMWI GCNNNNNNNGC 4 cut(s) 436, 650, 659, 795
BstNI CCWGG 3 cut(s) 222, 1280, 1371
BstNSI RCATGY 1 cut(s) 1475
BstSCI CCNGG 3 cut(s) 220, 1278, 1369
BstSFI CTRYAG 2 cut(s) 153, 549
BstUI CGCG 1 cut(s) 715
BstV1I GCAGC 2 cut(s) 167, 247
BstV2I GAAGAC 1 cut(s) 1404
BstX2I RGATCY 1 cut(s) 337
BstYI RGATCY 1 cut(s) 337
Bsu36I CCTNAGG 1 cut(s) 1322
BsuRI GGCC 1 cut(s) 219
BtsCI GGATG 2 cut(s) 355, 723
BtsIMutI CAGTG 2 cut(s) 1140, 1361
CaiI CAGNNNCTG 2 cut(s) 88, 194
CciI TCATGA 2 cut(s) 571, 594
CfoI GCGC 1 cut(s) 29
Cfr13I GGNCC 1 cut(s) 218
Csp6I GTAC 4 cut(s) 166, 624, 766, 778
CviQI GTAC 4 cut(s) 166, 624, 766, 778
DdeI CTNAG 5 cut(s) 60, 132, 440, 734, 1322
DpnI GATC 8 cut(s) 339, 374, 570, 588, 687, 705, 732, 1056
DpnII GATC 8 cut(s) 337, 372, 568, 586, 685, 703, 730, 1054
Eam1104I CTCTTC 3 cut(s) 15, 417, 768
EarI CTCTTC 3 cut(s) 15, 417, 768
EciI GGCGGA 1 cut(s) 32
Eco130I CCWWGG 1 cut(s) 271
Eco57I CTGAAG 4 cut(s) 65, 441, 720, 932
Eco81I CCTNAGG 1 cut(s) 1322
Eco88I CYCGRG 1 cut(s) 851
EcoNI CCTNNNNNAGG 1 cut(s) 1280
EcoO109I RGGNCCY 1 cut(s) 218
EcoRI GAATTC 1 cut(s) 173
EcoRII CCWGG 3 cut(s) 220, 1278, 1369
EcoT14I CCWWGG 1 cut(s) 271
EcoT22I ATGCAT 2 cut(s) 99, 791
ErhI CCWWGG 1 cut(s) 271
Esp3I CGTCTC 1 cut(s) 959
FalI AAGNNNNNCTT 2 cut(s) 433, 465
FaqI GGGAC 1 cut(s) 1348
Fnu4HI GCNGC 2 cut(s) 156, 261
FokI GGATG 2 cut(s) 342, 730
Fsp4HI GCNGC 2 cut(s) 156, 261
FspBI CTAG 3 cut(s) 50, 335, 1455
FspI TGCGCA 1 cut(s) 28
GlaI GCGC 1 cut(s) 28
GluI GCNGC 2 cut(s) 156, 261
GsuI CTGGAG 1 cut(s) 1301
HaeIII GGCC 1 cut(s) 219
HhaI GCGC 1 cut(s) 29
Hin6I GCGC 1 cut(s) 27
HinP1I GCGC 1 cut(s) 27
HincII GTYRAC 1 cut(s) 1431
HindII GTYRAC 1 cut(s) 1431
HindIII AAGCTT 2 cut(s) 482, 1188
HinfI GANTC 9 cut(s) 235, 283, 575, 635, 899, 1130, 1166, 1253, 1336
HpaI GTTAAC 1 cut(s) 1431
HphI GGTGA 4 cut(s) 581, 959, 1064, 1274
Hpy166II GTNNAC 7 cut(s) 168, 227, 768, 950, 1088, 1119, 1431
Hpy188I TCNGA 9 cut(s) 61, 391, 607, 700, 708, 737, 865, 912, 1196
Hpy188III TCNNGA 7 cut(s) 83, 335, 572, 595, 871, 965, 988
Hpy8I GTNNAC 7 cut(s) 168, 227, 768, 950, 1088, 1119, 1431
HpyAV CCTTC 7 cut(s) 200, 761, 907, 1153, 1397, 1401, 1486
HpyCH4III ACNGT 3 cut(s) 550, 628, 1365
HpyCH4IV ACGT 1 cut(s) 952
HpyF10VI GCNNNNNNNGC 4 cut(s) 436, 650, 659, 795
HpyF3I CTNAG 5 cut(s) 60, 132, 440, 734, 1322
HpySE526I ACGT 1 cut(s) 952
HspAI GCGC 1 cut(s) 27
KspAI GTTAAC 1 cut(s) 1431
Kzo9I GATC 8 cut(s) 337, 372, 568, 586, 685, 703, 730, 1054
LmnI GCTCC 1 cut(s) 463
Lsp1109I GCAGC 2 cut(s) 167, 247
LweI GCATC 4 cut(s) 31, 118, 413, 1460
MaeI CTAG 3 cut(s) 50, 335, 1455
MaeII ACGT 1 cut(s) 952
MaeIII GTNAC 4 cut(s) 531, 667, 1220, 1262
MalI GATC 8 cut(s) 339, 374, 570, 588, 687, 705, 732, 1056
MbiI CCGCTC 1 cut(s) 818
MboI GATC 8 cut(s) 337, 372, 568, 586, 685, 703, 730, 1054
MflI RGATCY 1 cut(s) 337
MlyI GAGTC 7 cut(s) 229, 277, 569, 908, 1175, 1247, 1330
MnlI CCTC 8 cut(s) 202, 454, 567, 602, 649, 1276, 1286, 1317
Mph1103I ATGCAT 2 cut(s) 99, 791
MroXI GAANNNNTTC 2 cut(s) 396, 1411
MseI TTAA 6 cut(s) 65, 921, 1155, 1380, 1430, 1492
MslI CAYNNNNRTG 1 cut(s) 1110
MspA1I CMGCKG 1 cut(s) 410
MspR9I CCNGG 3 cut(s) 222, 1280, 1371
Mva1269I GAATGC 2 cut(s) 1400, 1437
MvaI CCWGG 3 cut(s) 222, 1280, 1371
MvnI CGCG 1 cut(s) 715
MwoI GCNNNNNNNGC 4 cut(s) 436, 650, 659, 795
NdeII GATC 8 cut(s) 337, 372, 568, 586, 685, 703, 730, 1054
NlaIV GGNNCC 2 cut(s) 277, 749
NmuCI GTSAC 3 cut(s) 531, 1220, 1262
NsbI TGCGCA 1 cut(s) 28
NsiI ATGCAT 2 cut(s) 99, 791
NspI RCATGY 1 cut(s) 1475
PaeR7I CTCGAG 1 cut(s) 851
PagI TCATGA 2 cut(s) 571, 594
PctI GAATGC 2 cut(s) 1400, 1437
PdmI GAANNNNTTC 2 cut(s) 396, 1411
PfeI GAWTC 2 cut(s) 635, 1130
PfoI TCCNGGA 1 cut(s) 1278
PkrI GCNGC 2 cut(s) 157, 262
PleI GAGTC 7 cut(s) 229, 277, 569, 907, 1174, 1247, 1330
PpsI GAGTC 7 cut(s) 229, 277, 569, 907, 1174, 1247, 1330
PsiI TTATAA 1 cut(s) 1205
Psp6I CCWGG 3 cut(s) 220, 1278, 1369
PspGI CCWGG 3 cut(s) 220, 1278, 1369
PspN4I GGNNCC 2 cut(s) 277, 749
PspPI GGNCC 1 cut(s) 218
PspXI VCTCGAGB 1 cut(s) 851
PstI CTGCAG 1 cut(s) 157
PstNI CAGNNNCTG 2 cut(s) 88, 194
PsuI RGATCY 1 cut(s) 337
PvuII CAGCTG 1 cut(s) 410
RsaI GTAC 4 cut(s) 167, 625, 767, 779
RsaNI GTAC 4 cut(s) 166, 624, 766, 778
RseI CAYNNNNRTG 1 cut(s) 1110
SaqAI TTAA 6 cut(s) 65, 921, 1155, 1380, 1430, 1492
SatI GCNGC 2 cut(s) 156, 261
Sau3AI GATC 8 cut(s) 337, 372, 568, 586, 685, 703, 730, 1054
Sau96I GGNCC 1 cut(s) 218
SchI GAGTC 7 cut(s) 229, 277, 569, 908, 1175, 1247, 1330
ScrFI CCNGG 3 cut(s) 222, 1280, 1371
SfaNI GCATC 4 cut(s) 31, 118, 413, 1460
SfcI CTRYAG 2 cut(s) 153, 549
Sfr274I CTCGAG 1 cut(s) 851
SlaI CTCGAG 1 cut(s) 851
SmiMI CAYNNNNRTG 1 cut(s) 1110
SmlI CTYRAG 3 cut(s) 506, 851, 1315
SmoI CTYRAG 3 cut(s) 506, 851, 1315
SsiI CCGC 3 cut(s) 17, 715, 818
SspI AATATT 1 cut(s) 925
SspMI CTAG 3 cut(s) 50, 335, 1455
StyD4I CCNGG 3 cut(s) 220, 1278, 1369
StyI CCWWGG 1 cut(s) 271
TaaI ACNGT 3 cut(s) 550, 628, 1365
TaiI ACGT 1 cut(s) 955
TaqI TCGA 3 cut(s) 375, 852, 870
TatI WGTACW 3 cut(s) 165, 623, 765
TfiI GAWTC 2 cut(s) 635, 1130
Tru1I TTAA 6 cut(s) 65, 921, 1155, 1380, 1430, 1492
Tru9I TTAA 6 cut(s) 65, 921, 1155, 1380, 1430, 1492
TscAI CASTG 2 cut(s) 1147, 1368
TseFI GTSAC 3 cut(s) 531, 1220, 1262
TseI GCWGC 2 cut(s) 155, 260
Tsp45I GTSAC 3 cut(s) 531, 1220, 1262
TspDTI ATGAA 8 cut(s) 93, 515, 1016, 1026, 1065, 1094, 1107, 1468
TspRI CASTG 2 cut(s) 1147, 1368
XagI CCTNNNNNAGG 1 cut(s) 1280
XapI RAATTY 2 cut(s) 54, 173
XbaI TCTAGA 1 cut(s) 334
XceI RCATGY 1 cut(s) 1475
XcmI CCANNNNNNNNNTGG 1 cut(s) 366
XhoI CTCGAG 1 cut(s) 851
XmnI GAANNNNTTC 2 cut(s) 396, 1411
XspI CTAG 3 cut(s) 50, 335, 1455
Zsp2I ATGCAT 2 cut(s) 99, 791
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.