Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005500.1

Orthogroup ID

OG0002353

Physical Location & Seq

Genomic Coordinates Forward (+)

82414 .. 83181

Gene Structure 768 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005500.1_g000015.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 768 bp

ctggtggagattccgaccggagatcgaacttggaatccccttgttgctcgtcgggcatcatctcgtataaggtctcgtataagatcatcacctaactcttcttcgtttgatacggcggcgtcggagttcgagttctcagctcgattcgggtcgaatggatctactgctacctggccgatgagcttggcagatgagctattcttgaatggaaagatccggcccatgaagctctccacccacctggaaaagccccaggcgccgttgcaagctgtcatcgaggaagatggagatgatctattcgagttcgggctgctgagaggcagagatctgaggatgagggacaactctttgcggcggagaacgagatccatgtctccgatgagaaacatgccctttggtaataatgactgttgctttgcgaaagatctgaaggagggtgatttagggaaaaagaagaagaaactggagaatggtggggaggaggaggaggaggaagaagaagttgggagcttggagactactctttcggtttcagcttcgtcttcaagatcatcctcagctagaagaaactcgaaaagatgggtctttctgaaagattttctccacaggagtaaaagtgaagggaggagtactaataacaaattctgggccacaatctcattcttgagtagtggtaaggagaagaaaatagaggtaattgttgggggagaaaataggcagaaaattggctcgtccgagacaagtgttgatcaatgcggtagaaaatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1645

Protein Analysis

255

Amino Acids

28.65

Weight (kDa)

9.51

Isoelectric Point (pI)

65.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002353)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G62630
fragaria_vesca	FvH4_6g07220 FvH4_6g07220 FvH4_6g07220
malus_domestica	MD04G1195400.v1.1 MD12G1207500.v1.1
prunus_persica	Prupe.6G315100_v2.0.a1
pyrus_communis	pycom04g17260 pycom12g19510 pycom15g32780
rosa_chinensis	RchiOBHm_Chr1g0333511 RchiOBHm_Chr1g0352421 RchiOBHm_Chr2g0129671 RchiOBHm_Chr3g0456851 RchiOBHm_Chr5g0038721 RchiOBHm_Chr6g0249361
rosa_laevigata	RLG00000023272 RLG00000025274
rosa_multiflora	Rmu_co8019462.1_g000001 Rmu_sc0000133.1_g000019 Rmu_sc0000741.1_g000014 Rmu_sc0001016.1_g000061 Rmu_sc0001890.1_g000010 Rmu_sc0002095.1_g000008 Rmu_sc0002955.1_g000021 Rmu_sc0005500.1_g000015 Rmu_sc0010617.1_g000006 Rmu_sc0020548.1_g000004 Rmu_sc0020548.1_g000005 Rmu_sc0033338.1_g000001
rosa_roxburghii	Rroxscaffold_3G00223580 Rroxscaffold_6G00422440
rosa_rugosa	Rorug03G0016400
rosa_samantha	Rh1AG132800 Rh1AG157400 Rh1CG147200 Rh3AG076700 Rh3BG078500 Rh3CG078300 Rh3DG080300 Rh4DG243900
rosa_wichuraiana	Rw3G006580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	256
AciI	CCGC	4 cut(s)	116, 352, 355, 756
AclWI	GGATC	3 cut(s)	166, 208, 360
AcoI	YGGCCR	1 cut(s)	173
AcsI	RAATTY	1 cut(s)	641
AcuI	CTGAAG	1 cut(s)	449
AcyI	GRCGYC	2 cut(s)	119, 257
AfaI	GTAC	1 cut(s)	631
AgsI	TTSAA	2 cut(s)	205, 546
AjnI	CCWGG	3 cut(s)	170, 240, 252
AjuI	GAANNNNNNNTTGG	2 cut(s)	486, 518
AloI	GAACNNNNNNTCC	4 cut(s)	19, 51, 116, 148
AluBI	AGCT	8 cut(s)	140, 183, 196, 229, 269, 510, 536, 560
AluI	AGCT	8 cut(s)	140, 183, 196, 229, 269, 510, 536, 560
Alw26I	GTCTC	4 cut(s)	78, 378, 509, 731
AlwI	GGATC	3 cut(s)	166, 208, 360
AoxI	GGCC	3 cut(s)	173, 218, 648
ApeKI	GCWGC	1 cut(s)	310
ApoI	RAATTY	1 cut(s)	641
ArsI	GACNNNNNNTTYG	4 cut(s)	398, 430, 508, 540
AspLEI	GCGC	1 cut(s)	259
AspS9I	GGNCC	2 cut(s)	219, 648
AsuHPI	GGTGA	2 cut(s)	81, 449
BanI	GGYRCC	1 cut(s)	256
BbsI	GAAGAC	1 cut(s)	534
BbvCI	CCTCAGC	1 cut(s)	556
BbvI	GCAGC	1 cut(s)	297
BccI	CCATC	2 cut(s)	278, 573
BceAI	ACGGC	2 cut(s)	129, 244
BciT130I	CCWGG	3 cut(s)	172, 242, 254
BclI	TGATCA	1 cut(s)	748
BcoDI	GTCTC	4 cut(s)	78, 378, 509, 731
BfaI	CTAG	1 cut(s)	561
BfoI	RGCGCY	1 cut(s)	260
BglII	AGATCT	2 cut(s)	325, 424
BisI	GCNGC	3 cut(s)	117, 311, 353
BlsI	GCNGC	3 cut(s)	118, 312, 354
BmcAI	AGTACT	1 cut(s)	631
Bme1390I	CCNGG	3 cut(s)	172, 242, 254
BmgT120I	GGNCC	2 cut(s)	219, 648
BmiI	GGNNCC	1 cut(s)	258
BmrFI	CCNGG	3 cut(s)	172, 242, 254
BmsI	GCATC	1 cut(s)	65
BpiI	GAAGAC	1 cut(s)	534
BpmI	CTGGAG	1 cut(s)	485
Bpu10I	CCTNAGC	1 cut(s)	556
BpuEI	CTTGAG	1 cut(s)	685
BsaHI	GRCGYC	2 cut(s)	119, 257
BsaI	GGTCTC	1 cut(s)	78
BsaJI	CCNNGG	1 cut(s)	252
BsaWI	WCCGGW	1 cut(s)	17
BsaXI	ACNNNNNCTCC	4 cut(s)	116, 146, 601, 631
Bse1I	ACTGG	1 cut(s)	468
BseBI	CCWGG	3 cut(s)	172, 242, 254
BseDI	CCNNGG	1 cut(s)	252
BseGI	GGATG	2 cut(s)	339, 551
BseMII	CTCAG	4 cut(s)	150, 305, 320, 570
BseNI	ACTGG	1 cut(s)	468
BseRI	GAGGAG	5 cut(s)	494, 497, 500, 503, 640
BseXI	GCAGC	1 cut(s)	297
Bsh1285I	CGRYCG	1 cut(s)	18
BshFI	GGCC	3 cut(s)	175, 220, 650
BshNI	GGYRCC	1 cut(s)	256
BsiEI	CGRYCG	1 cut(s)	18
BsiSI	CCGG	2 cut(s)	18, 217
BslFI	GGGAC	1 cut(s)	353
BsmAI	GTCTC	4 cut(s)	78, 378, 509, 731
BsmFI	GGGAC	1 cut(s)	353
BsnI	GGCC	3 cut(s)	175, 220, 650
Bso31I	GGTCTC	1 cut(s)	78
BspACI	CCGC	4 cut(s)	116, 352, 355, 756
BspANI	GGCC	3 cut(s)	175, 220, 650
BspCNI	CTCAG	4 cut(s)	149, 306, 321, 569
BspLI	GGNNCC	1 cut(s)	258
BspPI	GGATC	3 cut(s)	166, 208, 360
BspT107I	GGYRCC	1 cut(s)	256
BspTNI	GGTCTC	1 cut(s)	78
BsrI	ACTGG	1 cut(s)	468
BssECI	CCNNGG	1 cut(s)	252
BssNI	GRCGYC	2 cut(s)	119, 257
Bst2UI	CCWGG	3 cut(s)	172, 242, 254
Bst4CI	ACNGT	1 cut(s)	410
Bst6I	CTCTTC	1 cut(s)	103
BstACI	GRCGYC	2 cut(s)	119, 257
BstC8I	GCNNGC	1 cut(s)	267
BstDEI	CTNAG	4 cut(s)	136, 314, 329, 556
BstF5I	GGATG	2 cut(s)	339, 551
BstH2I	RGCGCY	1 cut(s)	260
BstHHI	GCGC	1 cut(s)	259
BstMAI	GTCTC	4 cut(s)	78, 378, 509, 731
BstMCI	CGRYCG	1 cut(s)	18
BstMWI	GCNNNNNNNGC	3 cut(s)	53, 226, 256
BstNI	CCWGG	3 cut(s)	172, 242, 254
BstNSI	RCATGY	1 cut(s)	391
BstSCI	CCNGG	3 cut(s)	170, 240, 252
BstV1I	GCAGC	1 cut(s)	297
BstV2I	GAAGAC	1 cut(s)	534
BstX2I	RGATCY	5 cut(s)	158, 213, 325, 365, 424
BstXI	CCANNNNNNTGG	1 cut(s)	241
BstYI	RGATCY	5 cut(s)	158, 213, 325, 365, 424
BsuRI	GGCC	3 cut(s)	175, 220, 650
BtsCI	GGATG	2 cut(s)	339, 551
Cac8I	GCNNGC	1 cut(s)	267
CfoI	GCGC	1 cut(s)	259
Cfr13I	GGNCC	2 cut(s)	219, 648
CseI	GACGC	1 cut(s)	108
Csp6I	GTAC	1 cut(s)	630
CviAII	CATG	3 cut(s)	223, 370, 388
CviQI	GTAC	1 cut(s)	630
DdeI	CTNAG	4 cut(s)	136, 314, 329, 556
DinI	GGCGCC	1 cut(s)	258
EaeI	YGGCCR	1 cut(s)	173
Eam1104I	CTCTTC	1 cut(s)	103
EarI	CTCTTC	1 cut(s)	103
EciI	GGCGGA	1 cut(s)	370
Eco31I	GGTCTC	1 cut(s)	78
Eco57I	CTGAAG	1 cut(s)	449
EcoRII	CCWGG	3 cut(s)	170, 240, 252
EgeI	GGCGCC	1 cut(s)	258
EheI	GGCGCC	1 cut(s)	258
FaeI	CATG	3 cut(s)	226, 373, 391
FaiI	YATR	5 cut(s)	68, 80, 224, 371, 389
FaqI	GGGAC	1 cut(s)	353
FatI	CATG	3 cut(s)	222, 369, 387
FbaI	TGATCA	1 cut(s)	748
Fnu4HI	GCNGC	3 cut(s)	117, 311, 353
FokI	GGATG	2 cut(s)	346, 538
Fsp4HI	GCNGC	3 cut(s)	117, 311, 353
FspBI	CTAG	1 cut(s)	561
GlaI	GCGC	1 cut(s)	258
GluI	GCNGC	3 cut(s)	117, 311, 353
GsuI	CTGGAG	1 cut(s)	485
HaeII	RGCGCY	1 cut(s)	260
HaeIII	GGCC	3 cut(s)	175, 220, 650
HapII	CCGG	2 cut(s)	18, 217
HgaI	GACGC	1 cut(s)	108
HhaI	GCGC	1 cut(s)	259
Hin1I	GRCGYC	2 cut(s)	119, 257
Hin1II	CATG	3 cut(s)	226, 373, 391
Hin6I	GCGC	1 cut(s)	257
HinP1I	GCGC	1 cut(s)	257
HinfI	GANTC	3 cut(s)	10, 34, 144
HpaII	CCGG	2 cut(s)	18, 217
HphI	GGTGA	2 cut(s)	81, 449
Hpy188I	TCNGA	7 cut(s)	15, 124, 330, 378, 429, 591, 736
Hpy188III	TCNNGA	3 cut(s)	202, 546, 664
Hpy99I	CGWCG	2 cut(s)	54, 124
HpyAV	CCTTC	2 cut(s)	424, 614
HpyCH4III	ACNGT	1 cut(s)	410
HpyCH4V	TGCA	1 cut(s)	265
HpyF10VI	GCNNNNNNNGC	3 cut(s)	53, 226, 256
HpyF3I	CTNAG	4 cut(s)	136, 314, 329, 556
Hsp92I	GRCGYC	2 cut(s)	119, 257
Hsp92II	CATG	3 cut(s)	226, 373, 391
HspAI	GCGC	1 cut(s)	257
KasI	GGCGCC	1 cut(s)	256
Ksp22I	TGATCA	1 cut(s)	748
LmnI	GCTCC	1 cut(s)	507
Lsp1109I	GCAGC	1 cut(s)	297
LweI	GCATC	1 cut(s)	65
MaeI	CTAG	1 cut(s)	561
MflI	RGATCY	5 cut(s)	158, 213, 325, 365, 424
MluCI	AATT	3 cut(s)	641, 696, 723
Mly113I	GGCGCC	1 cut(s)	257
MmeI	TCCRAC	2 cut(s)	38, 102
MspI	CCGG	2 cut(s)	18, 217
MspR9I	CCNGG	3 cut(s)	172, 242, 254
MvaI	CCWGG	3 cut(s)	172, 242, 254
MwoI	GCNNNNNNNGC	3 cut(s)	53, 226, 256
NarI	GGCGCC	1 cut(s)	257
NlaIII	CATG	3 cut(s)	226, 373, 391
NlaIV	GGNNCC	1 cut(s)	258
NspI	RCATGY	1 cut(s)	391
PfeI	GAWTC	3 cut(s)	10, 34, 144
PkrI	GCNGC	3 cut(s)	118, 312, 354
PluTI	GGCGCC	1 cut(s)	260
Psp6I	CCWGG	3 cut(s)	170, 240, 252
PspGI	CCWGG	3 cut(s)	170, 240, 252
PspN4I	GGNNCC	1 cut(s)	258
PspPI	GGNCC	2 cut(s)	219, 648
PsuI	RGATCY	5 cut(s)	158, 213, 325, 365, 424
RsaI	GTAC	1 cut(s)	631
RsaNI	GTAC	1 cut(s)	630
SatI	GCNGC	3 cut(s)	117, 311, 353
Sau96I	GGNCC	2 cut(s)	219, 648
ScaI	AGTACT	1 cut(s)	631
ScrFI	CCNGG	3 cut(s)	172, 242, 254
SfaNI	GCATC	1 cut(s)	65
SfoI	GGCGCC	1 cut(s)	258
SmlI	CTYRAG	1 cut(s)	664
SmoI	CTYRAG	1 cut(s)	664
Sse9I	AATT	3 cut(s)	641, 696, 723
SsiI	CCGC	4 cut(s)	116, 352, 355, 756
SspDI	GGCGCC	1 cut(s)	256
SspMI	CTAG	1 cut(s)	561
StyD4I	CCNGG	3 cut(s)	170, 240, 252
TaaI	ACNGT	1 cut(s)	410
TaqI	TCGA	7 cut(s)	25, 129, 142, 152, 276, 300, 572
TasI	AATT	3 cut(s)	641, 696, 723
TatI	WGTACW	1 cut(s)	629
TauI	GCSGC	2 cut(s)	119, 355
TfiI	GAWTC	3 cut(s)	10, 34, 144
TseI	GCWGC	1 cut(s)	310
TspDTI	ATGAA	1 cut(s)	239
XapI	RAATTY	1 cut(s)	641
XceI	RCATGY	1 cut(s)	391
XspI	CTAG	1 cut(s)	561
ZrmI	AGTACT	1 cut(s)	631

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.