Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0010617.1

Orthogroup ID

OG0002353

Physical Location & Seq

Genomic Coordinates Forward (+)

15879 .. 19952

Gene Structure 4074 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0010617.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 882 bp

atgggagccaatgacattgaggtctatagacatatattaaccatacatggtggctcctcccgcattgagactcttcacctaaccaaagcgccaatgccctcgggggagcttgtggactttctggtggagattccgaccggagatcgaacttggaatccccttgttgcttatcggacatcatctcatataaggtctcgtataagatcatcacccaactcttcttcgtttgatacggcggcgtcgaagttcgagttcttagctcgattcgggtttaatggatctactgctacctggccgatgagctctgcagatgagctgttcttgaatggaaagatccggcccatgaagctctcaacccacctggaaaagccccaggcgccgttgcaagctgtcaatgaggaaggtggagatgatctatttgagttcgggccgctgagaggcagagatctgaggatgagggacaagtctttgcagcggagaaccagatccaagtctccgatgagaaacatgccctttggtaataatgactgttgctttgcgaaagatctgaaggagtgtgatttggggaaaaagaagaagatatcggagaatagtgaggaggaggaggaggaggaagaagttgggagcttggagactactccttcggtttcagcttcgtctttaagatcatcctcagttggaagaaactcgaaaagatgggtctttctgaaagattttctccacaggagtaaaagtgaaggaaggagtaataacaaattctgggccacaatctcattctcgagtagtggtaaggagaagaaaatagaggttagtgttgggggagaaaataggcagaaaattggcttgtccgagacaagtgttgatcgatgcagtagaaaatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1645

Protein Analysis

293

Amino Acids

32.87

Weight (kDa)

9.23

Isoelectric Point (pI)

62.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002353)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G62630
fragaria_vesca	FvH4_6g07220 FvH4_6g07220 FvH4_6g07220
malus_domestica	MD04G1195400.v1.1 MD12G1207500.v1.1
prunus_persica	Prupe.6G315100_v2.0.a1
pyrus_communis	pycom04g17260 pycom12g19510 pycom15g32780
rosa_chinensis	RchiOBHm_Chr1g0333511 RchiOBHm_Chr1g0352421 RchiOBHm_Chr2g0129671 RchiOBHm_Chr3g0456851 RchiOBHm_Chr5g0038721 RchiOBHm_Chr6g0249361
rosa_laevigata	RLG00000023272 RLG00000025274
rosa_multiflora	Rmu_co8019462.1_g000001 Rmu_sc0000133.1_g000019 Rmu_sc0000741.1_g000014 Rmu_sc0001016.1_g000061 Rmu_sc0001890.1_g000010 Rmu_sc0002095.1_g000008 Rmu_sc0002955.1_g000021 Rmu_sc0005500.1_g000015 Rmu_sc0010617.1_g000006 Rmu_sc0020548.1_g000004 Rmu_sc0020548.1_g000005 Rmu_sc0033338.1_g000001
rosa_roxburghii	Rroxscaffold_3G00223580 Rroxscaffold_6G00422440
rosa_rugosa	Rorug03G0016400
rosa_samantha	Rh1AG132800 Rh1AG157400 Rh1CG147200 Rh3AG076700 Rh3BG078500 Rh3CG078300 Rh3DG080300 Rh4DG243900
rosa_wichuraiana	Rw3G006580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	20
AccB1I	GGYRCC	1 cut(s)	376
AciI	CCGC	4 cut(s)	61, 236, 431, 475
AclWI	GGATC	3 cut(s)	286, 328, 480
AcoI	YGGCCR	1 cut(s)	293
AcsI	RAATTY	1 cut(s)	755
AcuI	CTGAAG	1 cut(s)	569
AcyI	GRCGYC	2 cut(s)	239, 377
AfiI	CCNNNNNNNGG	1 cut(s)	437
AgsI	TTSAA	1 cut(s)	325
AjnI	CCWGG	3 cut(s)	290, 360, 372
AloI	GAACNNNNNNTCC	2 cut(s)	139, 171
AluBI	AGCT	8 cut(s)	109, 260, 303, 316, 349, 389, 627, 653
AluI	AGCT	8 cut(s)	109, 260, 303, 316, 349, 389, 627, 653
Alw21I	GWGCWC	1 cut(s)	305
Alw26I	GTCTC	5 cut(s)	62, 198, 498, 626, 845
AlwI	GGATC	3 cut(s)	286, 328, 480
Ama87I	CYCGRG	2 cut(s)	100, 778
AoxI	GGCC	4 cut(s)	293, 338, 428, 762
ApeKI	GCWGC	1 cut(s)	472
ApoI	RAATTY	1 cut(s)	755
ArsI	GACNNNNNNTTYG	4 cut(s)	518, 550, 625, 657
AspLEI	GCGC	2 cut(s)	91, 379
AspS9I	GGNCC	3 cut(s)	339, 428, 762
AsuHPI	GGTGA	2 cut(s)	68, 201
AvaI	CYCGRG	2 cut(s)	100, 778
BanI	GGYRCC	1 cut(s)	376
BanII	GRGCYC	1 cut(s)	305
Bbv12I	GWGCWC	1 cut(s)	305
BbvI	GCAGC	1 cut(s)	484
BccI	CCATC	1 cut(s)	690
BceAI	ACGGC	2 cut(s)	249, 364
BciT130I	CCWGG	3 cut(s)	292, 362, 374
BcoDI	GTCTC	5 cut(s)	62, 198, 498, 626, 845
BfmI	CTRYAG	2 cut(s)	25, 306
BfoI	RGCGCY	2 cut(s)	92, 380
BglII	AGATCT	2 cut(s)	445, 544
BisI	GCNGC	3 cut(s)	237, 431, 473
BlsI	GCNGC	3 cut(s)	238, 432, 474
Bme1390I	CCNGG	3 cut(s)	292, 362, 374
BmeT110I	CYCGRG	2 cut(s)	100, 778
BmgT120I	GGNCC	3 cut(s)	339, 428, 762
BmiI	GGNNCC	3 cut(s)	7, 55, 378
BmrFI	CCNGG	3 cut(s)	292, 362, 374
BmsI	GCATC	1 cut(s)	857
Bsa29I	ATCGAT	1 cut(s)	865
BsaHI	GRCGYC	2 cut(s)	239, 377
BsaI	GGTCTC	1 cut(s)	198
BsaJI	CCNNGG	2 cut(s)	99, 372
BsaWI	WCCGGW	1 cut(s)	137
BsaXI	ACNNNNNCTCC	2 cut(s)	718, 748
Bsc4I	CCNNNNNNNGG	1 cut(s)	437
BseBI	CCWGG	3 cut(s)	292, 362, 374
BseCI	ATCGAT	1 cut(s)	865
BseDI	CCNNGG	2 cut(s)	99, 372
BseGI	GGATG	2 cut(s)	459, 668
BseLI	CCNNNNNNNGG	1 cut(s)	437
BseMII	CTCAG	3 cut(s)	425, 440, 687
BseRI	GAGGAG	6 cut(s)	46, 611, 614, 617, 620, 623
BseXI	GCAGC	1 cut(s)	484
Bsh1285I	CGRYCG	1 cut(s)	138
BshFI	GGCC	4 cut(s)	295, 340, 430, 764
BshNI	GGYRCC	1 cut(s)	376
BshVI	ATCGAT	1 cut(s)	865
BsiEI	CGRYCG	1 cut(s)	138
BsiHKAI	GWGCWC	1 cut(s)	305
BsiHKCI	CYCGRG	2 cut(s)	100, 778
BsiSI	CCGG	2 cut(s)	138, 337
BslFI	GGGAC	1 cut(s)	473
BslI	CCNNNNNNNGG	1 cut(s)	437
BsmAI	GTCTC	5 cut(s)	62, 198, 498, 626, 845
BsmFI	GGGAC	1 cut(s)	473
BsnI	GGCC	4 cut(s)	295, 340, 430, 764
Bso31I	GGTCTC	1 cut(s)	198
BsoBI	CYCGRG	2 cut(s)	100, 778
Bsp1286I	GDGCHC	1 cut(s)	305
BspACI	CCGC	4 cut(s)	61, 236, 431, 475
BspANI	GGCC	4 cut(s)	295, 340, 430, 764
BspCNI	CTCAG	3 cut(s)	426, 441, 686
BspDI	ATCGAT	1 cut(s)	865
BspLI	GGNNCC	3 cut(s)	7, 55, 378
BspMAI	CTGCAG	1 cut(s)	310
BspPI	GGATC	3 cut(s)	286, 328, 480
BspT107I	GGYRCC	1 cut(s)	376
BspTNI	GGTCTC	1 cut(s)	198
BssECI	CCNNGG	2 cut(s)	99, 372
BssNI	GRCGYC	2 cut(s)	239, 377
Bst2UI	CCWGG	3 cut(s)	292, 362, 374
Bst4CI	ACNGT	1 cut(s)	530
Bst6I	CTCTTC	2 cut(s)	78, 223
BstACI	GRCGYC	2 cut(s)	239, 377
BstC8I	GCNNGC	1 cut(s)	387
BstDEI	CTNAG	4 cut(s)	256, 434, 449, 673
BstF5I	GGATG	2 cut(s)	459, 668
BstH2I	RGCGCY	2 cut(s)	92, 380
BstHHI	GCGC	2 cut(s)	91, 379
BstMAI	GTCTC	5 cut(s)	62, 198, 498, 626, 845
BstMCI	CGRYCG	1 cut(s)	138
BstMWI	GCNNNNNNNGC	3 cut(s)	60, 346, 376
BstNI	CCWGG	3 cut(s)	292, 362, 374
BstNSI	RCATGY	1 cut(s)	511
BstSCI	CCNGG	3 cut(s)	290, 360, 372
BstSFI	CTRYAG	2 cut(s)	25, 306
BstV1I	GCAGC	1 cut(s)	484
BstX2I	RGATCY	5 cut(s)	278, 333, 445, 485, 544
BstYI	RGATCY	5 cut(s)	278, 333, 445, 485, 544
Bsu15I	ATCGAT	1 cut(s)	865
BsuRI	GGCC	4 cut(s)	295, 340, 430, 764
BsuTUI	ATCGAT	1 cut(s)	865
BtsCI	GGATG	2 cut(s)	459, 668
Cac8I	GCNNGC	1 cut(s)	387
CfoI	GCGC	2 cut(s)	91, 379
Cfr13I	GGNCC	3 cut(s)	339, 428, 762
ClaI	ATCGAT	1 cut(s)	865
CseI	GACGC	1 cut(s)	228
CviAII	CATG	3 cut(s)	47, 343, 508
DdeI	CTNAG	4 cut(s)	256, 434, 449, 673
DinI	GGCGCC	1 cut(s)	378
DrdI	GACNNNNNNGTC	1 cut(s)	20
DseDI	GACNNNNNNGTC	1 cut(s)	20
EaeI	YGGCCR	1 cut(s)	293
Eam1104I	CTCTTC	2 cut(s)	78, 223
EarI	CTCTTC	2 cut(s)	78, 223
Ecl136II	GAGCTC	1 cut(s)	303
Eco24I	GRGCYC	1 cut(s)	305
Eco31I	GGTCTC	1 cut(s)	198
Eco32I	GATATC	1 cut(s)	582
Eco53kI	GAGCTC	1 cut(s)	303
Eco57I	CTGAAG	1 cut(s)	569
Eco88I	CYCGRG	2 cut(s)	100, 778
EcoICRI	GAGCTC	1 cut(s)	303
EcoRII	CCWGG	3 cut(s)	290, 360, 372
EcoRV	GATATC	1 cut(s)	582
EcoT38I	GRGCYC	1 cut(s)	305
EgeI	GGCGCC	1 cut(s)	378
EheI	GGCGCC	1 cut(s)	378
FaeI	CATG	3 cut(s)	50, 346, 511
FaqI	GGGAC	1 cut(s)	473
FatI	CATG	3 cut(s)	46, 342, 507
FauI	CCCGC	1 cut(s)	68
Fnu4HI	GCNGC	3 cut(s)	237, 431, 473
FokI	GGATG	2 cut(s)	466, 655
FriOI	GRGCYC	1 cut(s)	305
Fsp4HI	GCNGC	3 cut(s)	237, 431, 473
GlaI	GCGC	2 cut(s)	90, 378
GluI	GCNGC	3 cut(s)	237, 431, 473
HaeII	RGCGCY	2 cut(s)	92, 380
HaeIII	GGCC	4 cut(s)	295, 340, 430, 764
HapII	CCGG	2 cut(s)	138, 337
HgaI	GACGC	1 cut(s)	228
HhaI	GCGC	2 cut(s)	91, 379
Hin1I	GRCGYC	2 cut(s)	239, 377
Hin1II	CATG	3 cut(s)	50, 346, 511
Hin6I	GCGC	2 cut(s)	89, 377
HinP1I	GCGC	2 cut(s)	89, 377
HinfI	GANTC	4 cut(s)	70, 130, 154, 264
HpaII	CCGG	2 cut(s)	138, 337
HphI	GGTGA	2 cut(s)	68, 201
Hpy166II	GTNNAC	1 cut(s)	115
Hpy188I	TCNGA	8 cut(s)	135, 174, 450, 498, 549, 586, 708, 850
Hpy188III	TCNNGA	2 cut(s)	322, 778
Hpy8I	GTNNAC	1 cut(s)	115
Hpy99I	CGWCG	1 cut(s)	244
HpyAV	CCTTC	5 cut(s)	395, 544, 651, 731, 735
HpyCH4III	ACNGT	1 cut(s)	530
HpyCH4V	TGCA	4 cut(s)	308, 385, 472, 870
HpyF10VI	GCNNNNNNNGC	3 cut(s)	60, 346, 376
HpyF3I	CTNAG	4 cut(s)	256, 434, 449, 673
Hsp92I	GRCGYC	2 cut(s)	239, 377
Hsp92II	CATG	3 cut(s)	50, 346, 511
HspAI	GCGC	2 cut(s)	89, 377
KasI	GGCGCC	1 cut(s)	376
LmnI	GCTCC	4 cut(s)	5, 59, 106, 624
Lsp1109I	GCAGC	1 cut(s)	484
LweI	GCATC	1 cut(s)	857
MboII	GAAGA	8 cut(s)	65, 210, 213, 586, 589, 626, 693, 808
MflI	RGATCY	5 cut(s)	278, 333, 445, 485, 544
MhlI	GDGCHC	1 cut(s)	305
MluCI	AATT	2 cut(s)	755, 837
Mly113I	GGCGCC	1 cut(s)	377
MlyI	GAGTC	1 cut(s)	64
MmeI	TCCRAC	2 cut(s)	158, 658
MseI	TTAA	3 cut(s)	38, 273, 662
MspA1I	CMGCKG	2 cut(s)	433, 475
MspI	CCGG	2 cut(s)	138, 337
MspR9I	CCNGG	3 cut(s)	292, 362, 374
MvaI	CCWGG	3 cut(s)	292, 362, 374
MwoI	GCNNNNNNNGC	3 cut(s)	60, 346, 376
NarI	GGCGCC	1 cut(s)	377
NlaIII	CATG	3 cut(s)	50, 346, 511
NlaIV	GGNNCC	3 cut(s)	7, 55, 378
NspI	RCATGY	1 cut(s)	511
PaeR7I	CTCGAG	1 cut(s)	778
PcsI	WCGNNNNNNNCGW	1 cut(s)	239
PfeI	GAWTC	3 cut(s)	130, 154, 264
PkrI	GCNGC	3 cut(s)	238, 432, 474
PleI	GAGTC	1 cut(s)	64
PluTI	GGCGCC	1 cut(s)	380
PpsI	GAGTC	1 cut(s)	64
Psp124BI	GAGCTC	1 cut(s)	305
Psp6I	CCWGG	3 cut(s)	290, 360, 372
PspGI	CCWGG	3 cut(s)	290, 360, 372
PspN4I	GGNNCC	3 cut(s)	7, 55, 378
PspPI	GGNCC	3 cut(s)	339, 428, 762
PstI	CTGCAG	1 cut(s)	310
PsuI	RGATCY	5 cut(s)	278, 333, 445, 485, 544
SacI	GAGCTC	1 cut(s)	305
SaqAI	TTAA	3 cut(s)	38, 273, 662
SatI	GCNGC	3 cut(s)	237, 431, 473
Sau96I	GGNCC	3 cut(s)	339, 428, 762
SchI	GAGTC	1 cut(s)	64
ScrFI	CCNGG	3 cut(s)	292, 362, 374
SduI	GDGCHC	1 cut(s)	305
SfaNI	GCATC	1 cut(s)	857
SfcI	CTRYAG	2 cut(s)	25, 306
SfoI	GGCGCC	1 cut(s)	378
Sfr274I	CTCGAG	1 cut(s)	778
SlaI	CTCGAG	1 cut(s)	778
SmlI	CTYRAG	1 cut(s)	778
SmoI	CTYRAG	1 cut(s)	778
Sse9I	AATT	2 cut(s)	755, 837
SsiI	CCGC	4 cut(s)	61, 236, 431, 475
SspDI	GGCGCC	1 cut(s)	376
SstI	GAGCTC	1 cut(s)	305
StyD4I	CCNGG	3 cut(s)	290, 360, 372
TaaI	ACNGT	1 cut(s)	530
TaqI	TCGA	7 cut(s)	145, 242, 249, 262, 689, 779, 865
TasI	AATT	2 cut(s)	755, 837
TauI	GCSGC	2 cut(s)	239, 433
TfiI	GAWTC	3 cut(s)	130, 154, 264
Tru1I	TTAA	3 cut(s)	38, 273, 662
Tru9I	TTAA	3 cut(s)	38, 273, 662
TseI	GCWGC	1 cut(s)	472
TspDTI	ATGAA	1 cut(s)	359
XapI	RAATTY	1 cut(s)	755
XceI	RCATGY	1 cut(s)	511
XhoI	CTCGAG	1 cut(s)	778

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.