Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001890.1

Orthogroup ID

OG0002353

Physical Location & Seq

Genomic Coordinates Reverse (-)

66702 .. 67097

Gene Structure 396 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001890.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 396 bp

atgagctcggcagataagttgttcttgaatggaaagatccggcccatgaagctctccacccacctggaaaagccccaggcgccgttgcaagctgtcaacgaggaagatggagataatctattcgagttcgggccgctgaaaggcagagatctgaggatgagggacaagtctctgtggcggagaacgagatccatatctccgatgagaaacatgccctttggctgcgagatttacggcgaaaacgaaatcagtaataatgactgttgctttgcgaaagatctgaatgagggtgatttggggaagaagaagaagaagctagagaatagtgaggaggaggaggaagaagaagttgggaacttggagactactccttcggttttggcttcgtcttcatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1645

Protein Analysis

131

Amino Acids

14.84

Weight (kDa)

5.06

Isoelectric Point (pI)

55.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002353)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G62630
fragaria_vesca	FvH4_6g07220 FvH4_6g07220 FvH4_6g07220
malus_domestica	MD04G1195400.v1.1 MD12G1207500.v1.1
prunus_persica	Prupe.6G315100_v2.0.a1
pyrus_communis	pycom04g17260 pycom12g19510 pycom15g32780
rosa_chinensis	RchiOBHm_Chr1g0333511 RchiOBHm_Chr1g0352421 RchiOBHm_Chr2g0129671 RchiOBHm_Chr3g0456851 RchiOBHm_Chr5g0038721 RchiOBHm_Chr6g0249361
rosa_laevigata	RLG00000023272 RLG00000025274
rosa_multiflora	Rmu_co8019462.1_g000001 Rmu_sc0000133.1_g000019 Rmu_sc0000741.1_g000014 Rmu_sc0001016.1_g000061 Rmu_sc0001890.1_g000010 Rmu_sc0002095.1_g000008 Rmu_sc0002955.1_g000021 Rmu_sc0005500.1_g000015 Rmu_sc0010617.1_g000006 Rmu_sc0020548.1_g000004 Rmu_sc0020548.1_g000005 Rmu_sc0033338.1_g000001
rosa_roxburghii	Rroxscaffold_3G00223580 Rroxscaffold_6G00422440
rosa_rugosa	Rorug03G0016400
rosa_samantha	Rh1AG132800 Rh1AG157400 Rh1CG147200 Rh3AG076700 Rh3BG078500 Rh3CG078300 Rh3DG080300 Rh4DG243900
rosa_wichuraiana	Rw3G006580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	79
AciI	CCGC	2 cut(s)	134, 178
AclWI	GGATC	2 cut(s)	31, 183
AcyI	GRCGYC	1 cut(s)	80
AfiI	CCNNNNNNNGG	1 cut(s)	140
AgsI	TTSAA	1 cut(s)	28
AjnI	CCWGG	2 cut(s)	63, 75
AjuI	GAANNNNNNNTTGG	2 cut(s)	333, 365
AluBI	AGCT	4 cut(s)	6, 52, 92, 316
AluI	AGCT	4 cut(s)	6, 52, 92, 316
Alw21I	GWGCWC	1 cut(s)	8
Alw26I	GTCTC	2 cut(s)	174, 356
AlwI	GGATC	2 cut(s)	31, 183
AoxI	GGCC	2 cut(s)	41, 131
ApeKI	GCWGC	1 cut(s)	222
ArsI	GACNNNNNNTTYG	4 cut(s)	251, 283, 355, 387
AspLEI	GCGC	1 cut(s)	82
AspS9I	GGNCC	2 cut(s)	42, 131
AsuHPI	GGTGA	1 cut(s)	302
BanI	GGYRCC	1 cut(s)	79
BanII	GRGCYC	1 cut(s)	8
BbsI	GAAGAC	1 cut(s)	381
Bbv12I	GWGCWC	1 cut(s)	8
BbvI	GCAGC	1 cut(s)	209
BccI	CCATC	1 cut(s)	101
BceAI	ACGGC	2 cut(s)	67, 250
BciT130I	CCWGG	2 cut(s)	65, 77
BcoDI	GTCTC	2 cut(s)	174, 356
BfaI	CTAG	1 cut(s)	317
BfoI	RGCGCY	1 cut(s)	83
BglII	AGATCT	2 cut(s)	148, 277
BisI	GCNGC	2 cut(s)	134, 223
BlsI	GCNGC	2 cut(s)	135, 224
Bme1390I	CCNGG	2 cut(s)	65, 77
BmgT120I	GGNCC	2 cut(s)	42, 131
BmiI	GGNNCC	1 cut(s)	81
BmrFI	CCNGG	2 cut(s)	65, 77
BpiI	GAAGAC	1 cut(s)	381
BsaBI	GATNNNNATC	1 cut(s)	193
BsaHI	GRCGYC	1 cut(s)	80
BsaJI	CCNNGG	1 cut(s)	75
Bsc4I	CCNNNNNNNGG	1 cut(s)	140
Bse8I	GATNNNNATC	1 cut(s)	193
BseBI	CCWGG	2 cut(s)	65, 77
BseDI	CCNNGG	1 cut(s)	75
BseGI	GGATG	1 cut(s)	162
BseJI	GATNNNNATC	1 cut(s)	193
BseLI	CCNNNNNNNGG	1 cut(s)	140
BseMII	CTCAG	1 cut(s)	143
BseRI	GAGGAG	3 cut(s)	344, 347, 350
BseXI	GCAGC	1 cut(s)	209
BshFI	GGCC	2 cut(s)	43, 133
BshNI	GGYRCC	1 cut(s)	79
BsiHKAI	GWGCWC	1 cut(s)	8
BsiSI	CCGG	1 cut(s)	40
BslFI	GGGAC	1 cut(s)	176
BslI	CCNNNNNNNGG	1 cut(s)	140
BsmAI	GTCTC	2 cut(s)	174, 356
BsmFI	GGGAC	1 cut(s)	176
BsnI	GGCC	2 cut(s)	43, 133
Bsp1286I	GDGCHC	1 cut(s)	8
Bsp143I	GATC	4 cut(s)	36, 148, 188, 277
BspACI	CCGC	2 cut(s)	134, 178
BspANI	GGCC	2 cut(s)	43, 133
BspCNI	CTCAG	1 cut(s)	144
BspHI	TCATGA	1 cut(s)	392
BspLI	GGNNCC	1 cut(s)	81
BspPI	GGATC	2 cut(s)	31, 183
BspT107I	GGYRCC	1 cut(s)	79
BssECI	CCNNGG	1 cut(s)	75
BssMI	GATC	4 cut(s)	36, 148, 188, 277
BssNI	GRCGYC	1 cut(s)	80
Bst2UI	CCWGG	2 cut(s)	65, 77
Bst4CI	ACNGT	1 cut(s)	263
BstACI	GRCGYC	1 cut(s)	80
BstC8I	GCNNGC	1 cut(s)	90
BstDEI	CTNAG	1 cut(s)	152
BstF5I	GGATG	1 cut(s)	162
BstH2I	RGCGCY	1 cut(s)	83
BstHHI	GCGC	1 cut(s)	82
BstKTI	GATC	4 cut(s)	39, 151, 191, 280
BstMAI	GTCTC	2 cut(s)	174, 356
BstMBI	GATC	4 cut(s)	36, 148, 188, 277
BstMWI	GCNNNNNNNGC	2 cut(s)	49, 79
BstNI	CCWGG	2 cut(s)	65, 77
BstNSI	RCATGY	1 cut(s)	214
BstSCI	CCNGG	2 cut(s)	63, 75
BstV1I	GCAGC	1 cut(s)	209
BstV2I	GAAGAC	1 cut(s)	381
BstX2I	RGATCY	4 cut(s)	36, 148, 188, 277
BstXI	CCANNNNNNTGG	1 cut(s)	64
BstYI	RGATCY	4 cut(s)	36, 148, 188, 277
BsuRI	GGCC	2 cut(s)	43, 133
BtsCI	GGATG	1 cut(s)	162
Cac8I	GCNNGC	1 cut(s)	90
CciI	TCATGA	1 cut(s)	392
CfoI	GCGC	1 cut(s)	82
Cfr13I	GGNCC	2 cut(s)	42, 131
CviAII	CATG	3 cut(s)	46, 211, 393
CviJI	RGCY	9 cut(s)	6, 43, 52, 73, 92, 133, 222, 316, 383
CviKI_1	RGCY	9 cut(s)	6, 43, 52, 73, 92, 133, 222, 316, 383
DdeI	CTNAG	1 cut(s)	152
DinI	GGCGCC	1 cut(s)	81
DpnI	GATC	4 cut(s)	38, 150, 190, 279
DpnII	GATC	4 cut(s)	36, 148, 188, 277
EciI	GGCGGA	1 cut(s)	193
Ecl136II	GAGCTC	1 cut(s)	6
Eco24I	GRGCYC	1 cut(s)	8
Eco53kI	GAGCTC	1 cut(s)	6
EcoICRI	GAGCTC	1 cut(s)	6
EcoRII	CCWGG	2 cut(s)	63, 75
EcoT38I	GRGCYC	1 cut(s)	8
EgeI	GGCGCC	1 cut(s)	81
EheI	GGCGCC	1 cut(s)	81
FaeI	CATG	3 cut(s)	49, 214, 396
FaiI	YATR	4 cut(s)	47, 194, 212, 394
FalI	AAGNNNNNCTT	2 cut(s)	8, 40
FaqI	GGGAC	1 cut(s)	176
FatI	CATG	3 cut(s)	45, 210, 392
Fnu4HI	GCNGC	2 cut(s)	134, 223
FokI	GGATG	1 cut(s)	169
FriOI	GRGCYC	1 cut(s)	8
Fsp4HI	GCNGC	2 cut(s)	134, 223
FspBI	CTAG	1 cut(s)	317
GlaI	GCGC	1 cut(s)	81
GluI	GCNGC	2 cut(s)	134, 223
HaeII	RGCGCY	1 cut(s)	83
HaeIII	GGCC	2 cut(s)	43, 133
HapII	CCGG	1 cut(s)	40
HhaI	GCGC	1 cut(s)	82
Hin1I	GRCGYC	1 cut(s)	80
Hin1II	CATG	3 cut(s)	49, 214, 396
Hin6I	GCGC	1 cut(s)	80
HinP1I	GCGC	1 cut(s)	80
HincII	GTYRAC	1 cut(s)	97
HindII	GTYRAC	1 cut(s)	97
HpaII	CCGG	1 cut(s)	40
HphI	GGTGA	1 cut(s)	302
Hpy166II	GTNNAC	1 cut(s)	97
Hpy188I	TCNGA	3 cut(s)	153, 201, 282
Hpy188III	TCNNGA	2 cut(s)	25, 393
Hpy8I	GTNNAC	1 cut(s)	97
HpyAV	CCTTC	1 cut(s)	381
HpyCH4III	ACNGT	1 cut(s)	263
HpyCH4V	TGCA	1 cut(s)	88
HpyF10VI	GCNNNNNNNGC	2 cut(s)	49, 79
HpyF3I	CTNAG	1 cut(s)	152
Hsp92I	GRCGYC	1 cut(s)	80
Hsp92II	CATG	3 cut(s)	49, 214, 396
HspAI	GCGC	1 cut(s)	80
KasI	GGCGCC	1 cut(s)	79
Kzo9I	GATC	4 cut(s)	36, 148, 188, 277
LpnPI	CCDG	5 cut(s)	50, 53, 62, 77, 89
Lsp1109I	GCAGC	1 cut(s)	209
MaeI	CTAG	1 cut(s)	317
MalI	GATC	4 cut(s)	38, 150, 190, 279
MboI	GATC	4 cut(s)	36, 148, 188, 277
MboII	GAAGA	8 cut(s)	116, 313, 316, 319, 322, 353, 356, 381
MflI	RGATCY	4 cut(s)	36, 148, 188, 277
MhlI	GDGCHC	1 cut(s)	8
Mly113I	GGCGCC	1 cut(s)	80
MnlI	CCTC	8 cut(s)	94, 147, 153, 280, 322, 325, 328, 331
MspA1I	CMGCKG	1 cut(s)	136
MspI	CCGG	1 cut(s)	40
MspR9I	CCNGG	2 cut(s)	65, 77
MvaI	CCWGG	2 cut(s)	65, 77
MwoI	GCNNNNNNNGC	2 cut(s)	49, 79
NarI	GGCGCC	1 cut(s)	80
NdeII	GATC	4 cut(s)	36, 148, 188, 277
NlaIII	CATG	3 cut(s)	49, 214, 396
NlaIV	GGNNCC	1 cut(s)	81
NspI	RCATGY	1 cut(s)	214
PagI	TCATGA	1 cut(s)	392
PcsI	WCGNNNNNNNCGW	1 cut(s)	240
PkrI	GCNGC	2 cut(s)	135, 224
PluTI	GGCGCC	1 cut(s)	83
Psp124BI	GAGCTC	1 cut(s)	8
Psp6I	CCWGG	2 cut(s)	63, 75
PspGI	CCWGG	2 cut(s)	63, 75
PspN4I	GGNNCC	1 cut(s)	81
PspPI	GGNCC	2 cut(s)	42, 131
PsuI	RGATCY	4 cut(s)	36, 148, 188, 277
SacI	GAGCTC	1 cut(s)	8
SatI	GCNGC	2 cut(s)	134, 223
Sau3AI	GATC	4 cut(s)	36, 148, 188, 277
Sau96I	GGNCC	2 cut(s)	42, 131
ScrFI	CCNGG	2 cut(s)	65, 77
SduI	GDGCHC	1 cut(s)	8
SetI	ASST	5 cut(s)	8, 54, 66, 94, 318
SfoI	GGCGCC	1 cut(s)	81
SsiI	CCGC	2 cut(s)	134, 178
SspDI	GGCGCC	1 cut(s)	79
SspMI	CTAG	1 cut(s)	317
SstI	GAGCTC	1 cut(s)	8
StyD4I	CCNGG	2 cut(s)	63, 75
TaaI	ACNGT	1 cut(s)	263
TaqI	TCGA	1 cut(s)	123
TauI	GCSGC	1 cut(s)	136
TseI	GCWGC	1 cut(s)	222
TspDTI	ATGAA	2 cut(s)	62, 381
XceI	RCATGY	1 cut(s)	214
XspI	CTAG	1 cut(s)	317

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.