Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002955.1

Orthogroup ID

OG0002353

Physical Location & Seq

Genomic Coordinates Reverse (-)

117634 .. 118383

Gene Structure 750 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002955.1_g000021.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 750 bp

ctggtggagattccaacaggagatcgaacttggaatccccttgttgctcgtcggacatcatctcgtataagatcatcacccaactcttcttcgtttgatacggcggcgtcggagttcgagttctcagctcgattcgggtcaaatggatctactgctacctggccgatgagctcggcagatgagctgttcttgaatagaaagatccggcccatgaagctctccacccacctggaaaagccccaggcgccgttgcaagctgtcaacgaggaagatggagatgatctattcgagttcgggccgctgagaggcagagatctgaggatgagggacaagtccctgcggcggagaacgagatccatgtctccgatgagaaacatgccctttggtaattcattctgttgctttgcgaaagatatgaaggagggtgatttggggaaaaagaagaagaaaccggagaatggtgaggaggaggatgagaaggaagaagttgggagcttggagactactccttcggtttcagcttcgtcttcaagatcatcctcagctggaagaaactcgaaaagatgggtctttctgaaagattttctccacagaagtaaaactgaagggaggagtaataacaaattctgggccacaatctcattctcgagtagtggtaaggagaagaaaatagaggtaagtgttgggggagaaagtaggcagaaaattggcttgtccgagacaagtgttgatcgatgcggtagaaaatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1645

Protein Analysis

249

Amino Acids

27.95

Weight (kDa)

9.73

Isoelectric Point (pI)

60.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002353)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G62630
fragaria_vesca	FvH4_6g07220 FvH4_6g07220 FvH4_6g07220
malus_domestica	MD04G1195400.v1.1 MD12G1207500.v1.1
prunus_persica	Prupe.6G315100_v2.0.a1
pyrus_communis	pycom04g17260 pycom12g19510 pycom15g32780
rosa_chinensis	RchiOBHm_Chr1g0333511 RchiOBHm_Chr1g0352421 RchiOBHm_Chr2g0129671 RchiOBHm_Chr3g0456851 RchiOBHm_Chr5g0038721 RchiOBHm_Chr6g0249361
rosa_laevigata	RLG00000023272 RLG00000025274
rosa_multiflora	Rmu_co8019462.1_g000001 Rmu_sc0000133.1_g000019 Rmu_sc0000741.1_g000014 Rmu_sc0001016.1_g000061 Rmu_sc0001890.1_g000010 Rmu_sc0002095.1_g000008 Rmu_sc0002955.1_g000021 Rmu_sc0005500.1_g000015 Rmu_sc0010617.1_g000006 Rmu_sc0020548.1_g000004 Rmu_sc0020548.1_g000005 Rmu_sc0033338.1_g000001
rosa_roxburghii	Rroxscaffold_3G00223580 Rroxscaffold_6G00422440
rosa_rugosa	Rorug03G0016400
rosa_samantha	Rh1AG132800 Rh1AG157400 Rh1CG147200 Rh3AG076700 Rh3BG078500 Rh3CG078300 Rh3DG080300 Rh4DG243900
rosa_wichuraiana	Rw3G006580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	244
AciI	CCGC	5 cut(s)	104, 299, 340, 343, 738
AclWI	GGATC	3 cut(s)	154, 196, 348
AcoI	YGGCCR	1 cut(s)	161
AcsI	RAATTY	1 cut(s)	623
AcuI	CTGAAG	1 cut(s)	624
AcyI	GRCGYC	2 cut(s)	107, 245
AfiI	CCNNNNNNNGG	3 cut(s)	305, 342, 458
AgsI	TTSAA	2 cut(s)	193, 531
AjnI	CCWGG	3 cut(s)	158, 228, 240
AloI	GAACNNNNNNTCC	4 cut(s)	19, 51, 104, 136
AluBI	AGCT	8 cut(s)	128, 171, 184, 217, 257, 495, 521, 545
AluI	AGCT	8 cut(s)	128, 171, 184, 217, 257, 495, 521, 545
Alw21I	GWGCWC	1 cut(s)	173
Alw26I	GTCTC	3 cut(s)	366, 494, 713
AlwI	GGATC	3 cut(s)	154, 196, 348
Ama87I	CYCGRG	1 cut(s)	646
AoxI	GGCC	4 cut(s)	161, 206, 296, 630
ApoI	RAATTY	1 cut(s)	623
ArsI	GACNNNNNNTTYG	2 cut(s)	493, 525
AspLEI	GCGC	1 cut(s)	247
AspS9I	GGNCC	3 cut(s)	207, 296, 630
AsuHPI	GGTGA	3 cut(s)	69, 437, 473
AvaI	CYCGRG	1 cut(s)	646
BanI	GGYRCC	1 cut(s)	244
BanII	GRGCYC	1 cut(s)	173
BbsI	GAAGAC	1 cut(s)	519
Bbv12I	GWGCWC	1 cut(s)	173
BbvCI	CCTCAGC	1 cut(s)	541
BccI	CCATC	2 cut(s)	266, 558
BceAI	ACGGC	2 cut(s)	117, 232
BciT130I	CCWGG	3 cut(s)	160, 230, 242
BcoDI	GTCTC	3 cut(s)	366, 494, 713
BfoI	RGCGCY	1 cut(s)	248
BglII	AGATCT	1 cut(s)	313
BisI	GCNGC	3 cut(s)	105, 299, 341
BlsI	GCNGC	3 cut(s)	106, 300, 342
Bme1390I	CCNGG	3 cut(s)	160, 230, 242
BmeT110I	CYCGRG	1 cut(s)	646
BmgT120I	GGNCC	3 cut(s)	207, 296, 630
BmiI	GGNNCC	1 cut(s)	246
BmrFI	CCNGG	3 cut(s)	160, 230, 242
BmsI	GCATC	1 cut(s)	725
BpiI	GAAGAC	1 cut(s)	519
Bpu10I	CCTNAGC	1 cut(s)	541
Bsa29I	ATCGAT	1 cut(s)	733
BsaHI	GRCGYC	2 cut(s)	107, 245
BsaJI	CCNNGG	1 cut(s)	240
BsaWI	WCCGGW	1 cut(s)	451
BsaXI	ACNNNNNCTCC	2 cut(s)	104, 134
Bsc4I	CCNNNNNNNGG	3 cut(s)	305, 342, 458
BseBI	CCWGG	3 cut(s)	160, 230, 242
BseCI	ATCGAT	1 cut(s)	733
BseDI	CCNNGG	1 cut(s)	240
BseGI	GGATG	3 cut(s)	327, 478, 536
BseLI	CCNNNNNNNGG	3 cut(s)	305, 342, 458
BseMII	CTCAG	4 cut(s)	138, 293, 308, 555
BseRI	GAGGAG	3 cut(s)	479, 482, 625
BshFI	GGCC	4 cut(s)	163, 208, 298, 632
BshNI	GGYRCC	1 cut(s)	244
BshVI	ATCGAT	1 cut(s)	733
BsiHKAI	GWGCWC	1 cut(s)	173
BsiHKCI	CYCGRG	1 cut(s)	646
BsiSI	CCGG	2 cut(s)	205, 452
BslFI	GGGAC	2 cut(s)	319, 341
BslI	CCNNNNNNNGG	3 cut(s)	305, 342, 458
BsmAI	GTCTC	3 cut(s)	366, 494, 713
BsmFI	GGGAC	2 cut(s)	319, 341
BsnI	GGCC	4 cut(s)	163, 208, 298, 632
BsoBI	CYCGRG	1 cut(s)	646
Bsp1286I	GDGCHC	1 cut(s)	173
Bsp143I	GATC	9 cut(s)	22, 71, 146, 201, 280, 313, 353, 533, 730
BspACI	CCGC	5 cut(s)	104, 299, 340, 343, 738
BspANI	GGCC	4 cut(s)	163, 208, 298, 632
BspCNI	CTCAG	4 cut(s)	137, 294, 309, 554
BspDI	ATCGAT	1 cut(s)	733
BspLI	GGNNCC	1 cut(s)	246
BspPI	GGATC	3 cut(s)	154, 196, 348
BspT107I	GGYRCC	1 cut(s)	244
BssECI	CCNNGG	1 cut(s)	240
BssMI	GATC	9 cut(s)	22, 71, 146, 201, 280, 313, 353, 533, 730
BssNI	GRCGYC	2 cut(s)	107, 245
Bst2UI	CCWGG	3 cut(s)	160, 230, 242
Bst6I	CTCTTC	1 cut(s)	91
BstACI	GRCGYC	2 cut(s)	107, 245
BstC8I	GCNNGC	1 cut(s)	255
BstDEI	CTNAG	4 cut(s)	124, 302, 317, 541
BstF5I	GGATG	3 cut(s)	327, 478, 536
BstH2I	RGCGCY	1 cut(s)	248
BstHHI	GCGC	1 cut(s)	247
BstKTI	GATC	9 cut(s)	25, 74, 149, 204, 283, 316, 356, 536, 733
BstMAI	GTCTC	3 cut(s)	366, 494, 713
BstMBI	GATC	9 cut(s)	22, 71, 146, 201, 280, 313, 353, 533, 730
BstMWI	GCNNNNNNNGC	2 cut(s)	214, 244
BstNI	CCWGG	3 cut(s)	160, 230, 242
BstNSI	RCATGY	1 cut(s)	379
BstSCI	CCNGG	3 cut(s)	158, 228, 240
BstV2I	GAAGAC	1 cut(s)	519
BstX2I	RGATCY	4 cut(s)	146, 201, 313, 353
BstXI	CCANNNNNNTGG	1 cut(s)	229
BstYI	RGATCY	4 cut(s)	146, 201, 313, 353
Bsu15I	ATCGAT	1 cut(s)	733
BsuRI	GGCC	4 cut(s)	163, 208, 298, 632
BsuTUI	ATCGAT	1 cut(s)	733
BtsCI	GGATG	3 cut(s)	327, 478, 536
Cac8I	GCNNGC	1 cut(s)	255
CfoI	GCGC	1 cut(s)	247
Cfr13I	GGNCC	3 cut(s)	207, 296, 630
ClaI	ATCGAT	1 cut(s)	733
CseI	GACGC	1 cut(s)	96
CviAII	CATG	3 cut(s)	211, 358, 376
DdeI	CTNAG	4 cut(s)	124, 302, 317, 541
DinI	GGCGCC	1 cut(s)	246
DpnI	GATC	9 cut(s)	24, 73, 148, 203, 282, 315, 355, 535, 732
DpnII	GATC	9 cut(s)	22, 71, 146, 201, 280, 313, 353, 533, 730
EaeI	YGGCCR	1 cut(s)	161
Eam1104I	CTCTTC	1 cut(s)	91
EarI	CTCTTC	1 cut(s)	91
EciI	GGCGGA	1 cut(s)	358
Ecl136II	GAGCTC	1 cut(s)	171
Eco24I	GRGCYC	1 cut(s)	173
Eco53kI	GAGCTC	1 cut(s)	171
Eco57I	CTGAAG	1 cut(s)	624
Eco88I	CYCGRG	1 cut(s)	646
EcoICRI	GAGCTC	1 cut(s)	171
EcoRII	CCWGG	3 cut(s)	158, 228, 240
EcoT38I	GRGCYC	1 cut(s)	173
EgeI	GGCGCC	1 cut(s)	246
EheI	GGCGCC	1 cut(s)	246
FaeI	CATG	3 cut(s)	214, 361, 379
FaiI	YATR	5 cut(s)	68, 212, 359, 377, 416
FaqI	GGGAC	2 cut(s)	319, 341
FatI	CATG	3 cut(s)	210, 357, 375
Fnu4HI	GCNGC	3 cut(s)	105, 299, 341
FokI	GGATG	3 cut(s)	334, 485, 523
FriOI	GRGCYC	1 cut(s)	173
Fsp4HI	GCNGC	3 cut(s)	105, 299, 341
GlaI	GCGC	1 cut(s)	246
GluI	GCNGC	3 cut(s)	105, 299, 341
HaeII	RGCGCY	1 cut(s)	248
HaeIII	GGCC	4 cut(s)	163, 208, 298, 632
HapII	CCGG	2 cut(s)	205, 452
HgaI	GACGC	1 cut(s)	96
HhaI	GCGC	1 cut(s)	247
Hin1I	GRCGYC	2 cut(s)	107, 245
Hin1II	CATG	3 cut(s)	214, 361, 379
Hin6I	GCGC	1 cut(s)	245
HinP1I	GCGC	1 cut(s)	245
HincII	GTYRAC	1 cut(s)	262
HindII	GTYRAC	1 cut(s)	262
HinfI	GANTC	3 cut(s)	10, 34, 132
HpaII	CCGG	2 cut(s)	205, 452
HphI	GGTGA	3 cut(s)	69, 437, 473
Hpy166II	GTNNAC	1 cut(s)	262
Hpy188I	TCNGA	6 cut(s)	54, 112, 318, 366, 576, 718
Hpy188III	TCNNGA	3 cut(s)	190, 531, 646
Hpy8I	GTNNAC	1 cut(s)	262
Hpy99I	CGWCG	2 cut(s)	54, 112
HpyAV	CCTTC	4 cut(s)	412, 472, 519, 599
HpyCH4V	TGCA	1 cut(s)	253
HpyF10VI	GCNNNNNNNGC	2 cut(s)	214, 244
HpyF3I	CTNAG	4 cut(s)	124, 302, 317, 541
Hsp92I	GRCGYC	2 cut(s)	107, 245
Hsp92II	CATG	3 cut(s)	214, 361, 379
HspAI	GCGC	1 cut(s)	245
KasI	GGCGCC	1 cut(s)	244
Kzo9I	GATC	9 cut(s)	22, 71, 146, 201, 280, 313, 353, 533, 730
LmnI	GCTCC	1 cut(s)	492
LweI	GCATC	1 cut(s)	725
MalI	GATC	9 cut(s)	24, 73, 148, 203, 282, 315, 355, 535, 732
MboI	GATC	9 cut(s)	22, 71, 146, 201, 280, 313, 353, 533, 730
MboII	GAAGA	9 cut(s)	78, 81, 281, 454, 457, 494, 519, 561, 676
MflI	RGATCY	4 cut(s)	146, 201, 313, 353
MhlI	GDGCHC	1 cut(s)	173
MluCI	AATT	3 cut(s)	388, 623, 705
Mly113I	GGCGCC	1 cut(s)	245
MmeI	TCCRAC	3 cut(s)	32, 38, 90
MspA1I	CMGCKG	2 cut(s)	301, 545
MspI	CCGG	2 cut(s)	205, 452
MspR9I	CCNGG	3 cut(s)	160, 230, 242
MvaI	CCWGG	3 cut(s)	160, 230, 242
MwoI	GCNNNNNNNGC	2 cut(s)	214, 244
NarI	GGCGCC	1 cut(s)	245
NdeII	GATC	9 cut(s)	22, 71, 146, 201, 280, 313, 353, 533, 730
NlaIII	CATG	3 cut(s)	214, 361, 379
NlaIV	GGNNCC	1 cut(s)	246
NmeAIII	GCCGAG	1 cut(s)	152
NspI	RCATGY	1 cut(s)	379
PaeR7I	CTCGAG	1 cut(s)	646
PfeI	GAWTC	3 cut(s)	10, 34, 132
PkrI	GCNGC	3 cut(s)	106, 300, 342
PluTI	GGCGCC	1 cut(s)	248
Psp124BI	GAGCTC	1 cut(s)	173
Psp6I	CCWGG	3 cut(s)	158, 228, 240
PspGI	CCWGG	3 cut(s)	158, 228, 240
PspN4I	GGNNCC	1 cut(s)	246
PspPI	GGNCC	3 cut(s)	207, 296, 630
PsuI	RGATCY	4 cut(s)	146, 201, 313, 353
PvuII	CAGCTG	1 cut(s)	545
SacI	GAGCTC	1 cut(s)	173
SatI	GCNGC	3 cut(s)	105, 299, 341
Sau3AI	GATC	9 cut(s)	22, 71, 146, 201, 280, 313, 353, 533, 730
Sau96I	GGNCC	3 cut(s)	207, 296, 630
ScrFI	CCNGG	3 cut(s)	160, 230, 242
SduI	GDGCHC	1 cut(s)	173
SfaNI	GCATC	1 cut(s)	725
SfoI	GGCGCC	1 cut(s)	246
Sfr274I	CTCGAG	1 cut(s)	646
SlaI	CTCGAG	1 cut(s)	646
SmlI	CTYRAG	1 cut(s)	646
SmoI	CTYRAG	1 cut(s)	646
Sse9I	AATT	3 cut(s)	388, 623, 705
SsiI	CCGC	5 cut(s)	104, 299, 340, 343, 738
SspDI	GGCGCC	1 cut(s)	244
SstI	GAGCTC	1 cut(s)	173
StyD4I	CCNGG	3 cut(s)	158, 228, 240
TaqI	TCGA	7 cut(s)	25, 117, 130, 288, 557, 647, 733
TasI	AATT	3 cut(s)	388, 623, 705
TauI	GCSGC	3 cut(s)	107, 301, 343
TfiI	GAWTC	3 cut(s)	10, 34, 132
TspDTI	ATGAA	3 cut(s)	227, 381, 431
XapI	RAATTY	1 cut(s)	623
XceI	RCATGY	1 cut(s)	379
XhoI	CTCGAG	1 cut(s)	646

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.