Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0002353

Physical Location & Seq

Genomic Coordinates Reverse (-)

6691212 .. 6691748

Gene Structure 537 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00223580.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

ATGAAGCTCTCCACCCACCTGGAAAAGCCCCAGGCGCCGTTGCAAGCTGTCAACGAGGAAGATGGAGATGATCTATTCGAGTTCGGGCCACTGAGAGGCAGAGATCTGAGGATGAGGGACAAGTCTCTGTGGCGGAGAACGAGATCCAAGTCTCCGATGAGAAACATGCCCTTTGGTAATAATCACTGTTGCTTTGCGAAAGATCTGAAGGAGGGTGATTTGGGGAAAAAGAAGAAGATACCGGAGAATGGTGAGGAGGAGGAGGAGGAAGAAGTTGGGAGCTTGGAGACTTCTCCTTCGGTTTCAGCTTCGTCTTCAAGATCATCCTCAGCTGGAAGAAACTCGAAAAGATGGGTCTTTCTGAAAGATTTTCTCCACAGAAGTAAAAGTGAAGGGAGGAGTAATAACAAATTCTGGGCCACAATCTCATTCTCGAGTAGTGGTAAGGAGAAGAAAATAGAGGTTAGTGTTAGGGGAGAAAATAGGCAGAAAATTGGCTTGTCTGAGACAAGTGTTGATCGATGCGGTAGAAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1645

Protein Analysis

178

Amino Acids

20.2

Weight (kDa)

9.51

Isoelectric Point (pI)

63.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF1645	PF07816	21 - 159	5.2e-19	Protein of unknown function (DUF1645)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002353)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G62630
fragaria_vesca	FvH4_6g07220 FvH4_6g07220 FvH4_6g07220
malus_domestica	MD04G1195400.v1.1 MD12G1207500.v1.1
prunus_persica	Prupe.6G315100_v2.0.a1
pyrus_communis	pycom04g17260 pycom12g19510 pycom15g32780
rosa_chinensis	RchiOBHm_Chr1g0333511 RchiOBHm_Chr1g0352421 RchiOBHm_Chr2g0129671 RchiOBHm_Chr3g0456851 RchiOBHm_Chr5g0038721 RchiOBHm_Chr6g0249361
rosa_laevigata	RLG00000023272 RLG00000025274
rosa_multiflora	Rmu_co8019462.1_g000001 Rmu_sc0000133.1_g000019 Rmu_sc0000741.1_g000014 Rmu_sc0001016.1_g000061 Rmu_sc0001890.1_g000010 Rmu_sc0002095.1_g000008 Rmu_sc0002955.1_g000021 Rmu_sc0005500.1_g000015 Rmu_sc0010617.1_g000006 Rmu_sc0020548.1_g000004 Rmu_sc0020548.1_g000005 Rmu_sc0033338.1_g000001
rosa_roxburghii	Rroxscaffold_3G00223580 Rroxscaffold_6G00422440
rosa_rugosa	Rorug03G0016400
rosa_samantha	Rh1AG132800 Rh1AG157400 Rh1CG147200 Rh3AG076700 Rh3BG078500 Rh3CG078300 Rh3DG080300 Rh4DG243900
rosa_wichuraiana	Rw3G006580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	34
AciI	CCGC	2 cut(s)	133, 525
AclWI	GGATC	1 cut(s)	138
AcsI	RAATTY	1 cut(s)	410
AcuI	CTGAAG	1 cut(s)	227
AcyI	GRCGYC	1 cut(s)	35
AfiI	CCNNNNNNNGG	2 cut(s)	95, 248
AgsI	TTSAA	1 cut(s)	318
AjnI	CCWGG	2 cut(s)	18, 30
AluBI	AGCT	5 cut(s)	7, 47, 282, 308, 332
AluI	AGCT	5 cut(s)	7, 47, 282, 308, 332
Alw26I	GTCTC	4 cut(s)	129, 156, 281, 500
AlwI	GGATC	1 cut(s)	138
Ama87I	CYCGRG	1 cut(s)	433
AoxI	GGCC	2 cut(s)	86, 417
ApoI	RAATTY	1 cut(s)	410
ArsI	GACNNNNNNTTYG	2 cut(s)	280, 312
AspLEI	GCGC	1 cut(s)	37
AspS9I	GGNCC	2 cut(s)	86, 417
AsuHPI	GGTGA	2 cut(s)	227, 263
AvaI	CYCGRG	1 cut(s)	433
BanI	GGYRCC	1 cut(s)	34
BbsI	GAAGAC	1 cut(s)	306
BbvCI	CCTCAGC	1 cut(s)	328
BccI	CCATC	2 cut(s)	56, 345
BceAI	ACGGC	1 cut(s)	22
BciT130I	CCWGG	2 cut(s)	20, 32
BcoDI	GTCTC	4 cut(s)	129, 156, 281, 500
BfoI	RGCGCY	1 cut(s)	38
BglII	AGATCT	2 cut(s)	103, 202
Bme1390I	CCNGG	2 cut(s)	20, 32
BmeT110I	CYCGRG	1 cut(s)	433
BmgT120I	GGNCC	2 cut(s)	86, 417
BmiI	GGNNCC	1 cut(s)	36
BmrFI	CCNGG	2 cut(s)	20, 32
BmsI	GCATC	1 cut(s)	512
BpiI	GAAGAC	1 cut(s)	306
Bpu10I	CCTNAGC	1 cut(s)	328
Bsa29I	ATCGAT	1 cut(s)	520
BsaHI	GRCGYC	1 cut(s)	35
BsaJI	CCNNGG	1 cut(s)	30
BsaWI	WCCGGW	1 cut(s)	241
Bsc4I	CCNNNNNNNGG	2 cut(s)	95, 248
BseBI	CCWGG	2 cut(s)	20, 32
BseCI	ATCGAT	1 cut(s)	520
BseDI	CCNNGG	1 cut(s)	30
BseGI	GGATG	2 cut(s)	117, 323
BseLI	CCNNNNNNNGG	2 cut(s)	95, 248
BseMII	CTCAG	4 cut(s)	83, 98, 342, 495
BseRI	GAGGAG	5 cut(s)	269, 272, 275, 278, 412
BshFI	GGCC	2 cut(s)	88, 419
BshNI	GGYRCC	1 cut(s)	34
BshVI	ATCGAT	1 cut(s)	520
BsiHKCI	CYCGRG	1 cut(s)	433
BsiSI	CCGG	1 cut(s)	242
BslFI	GGGAC	1 cut(s)	131
BslI	CCNNNNNNNGG	2 cut(s)	95, 248
BsmAI	GTCTC	4 cut(s)	129, 156, 281, 500
BsmFI	GGGAC	1 cut(s)	131
BsnI	GGCC	2 cut(s)	88, 419
BsoBI	CYCGRG	1 cut(s)	433
Bsp143I	GATC	6 cut(s)	70, 103, 143, 202, 320, 517
BspACI	CCGC	2 cut(s)	133, 525
BspANI	GGCC	2 cut(s)	88, 419
BspCNI	CTCAG	4 cut(s)	84, 99, 341, 496
BspDI	ATCGAT	1 cut(s)	520
BspLI	GGNNCC	1 cut(s)	36
BspPI	GGATC	1 cut(s)	138
BspT107I	GGYRCC	1 cut(s)	34
BssECI	CCNNGG	1 cut(s)	30
BssMI	GATC	6 cut(s)	70, 103, 143, 202, 320, 517
BssNI	GRCGYC	1 cut(s)	35
Bst2UI	CCWGG	2 cut(s)	20, 32
Bst4CI	ACNGT	1 cut(s)	188
BstACI	GRCGYC	1 cut(s)	35
BstC8I	GCNNGC	1 cut(s)	45
BstDEI	CTNAG	4 cut(s)	92, 107, 328, 504
BstF5I	GGATG	2 cut(s)	117, 323
BstH2I	RGCGCY	1 cut(s)	38
BstHHI	GCGC	1 cut(s)	37
BstKTI	GATC	6 cut(s)	73, 106, 146, 205, 323, 520
BstMAI	GTCTC	4 cut(s)	129, 156, 281, 500
BstMBI	GATC	6 cut(s)	70, 103, 143, 202, 320, 517
BstMWI	GCNNNNNNNGC	1 cut(s)	34
BstNI	CCWGG	2 cut(s)	20, 32
BstNSI	RCATGY	1 cut(s)	169
BstSCI	CCNGG	2 cut(s)	18, 30
BstV2I	GAAGAC	1 cut(s)	306
BstX2I	RGATCY	3 cut(s)	103, 143, 202
BstXI	CCANNNNNNTGG	1 cut(s)	19
BstYI	RGATCY	3 cut(s)	103, 143, 202
Bsu15I	ATCGAT	1 cut(s)	520
BsuRI	GGCC	2 cut(s)	88, 419
BsuTUI	ATCGAT	1 cut(s)	520
BtsCI	GGATG	2 cut(s)	117, 323
BtsIMutI	CAGTG	2 cut(s)	89, 184
Cac8I	GCNNGC	1 cut(s)	45
CfoI	GCGC	1 cut(s)	37
Cfr13I	GGNCC	2 cut(s)	86, 417
ClaI	ATCGAT	1 cut(s)	520
CviAII	CATG	1 cut(s)	166
CviJI	RGCY	9 cut(s)	7, 28, 47, 88, 282, 308, 332, 419, 498
CviKI_1	RGCY	9 cut(s)	7, 28, 47, 88, 282, 308, 332, 419, 498
DdeI	CTNAG	4 cut(s)	92, 107, 328, 504
DinI	GGCGCC	1 cut(s)	36
DpnI	GATC	6 cut(s)	72, 105, 145, 204, 322, 519
DpnII	GATC	6 cut(s)	70, 103, 143, 202, 320, 517
EciI	GGCGGA	1 cut(s)	148
Eco57I	CTGAAG	1 cut(s)	227
Eco88I	CYCGRG	1 cut(s)	433
EcoRII	CCWGG	2 cut(s)	18, 30
EgeI	GGCGCC	1 cut(s)	36
EheI	GGCGCC	1 cut(s)	36
FaeI	CATG	1 cut(s)	169
FaiI	YATR	1 cut(s)	167
FaqI	GGGAC	1 cut(s)	131
FatI	CATG	1 cut(s)	165
FokI	GGATG	2 cut(s)	124, 310
GlaI	GCGC	1 cut(s)	36
HaeII	RGCGCY	1 cut(s)	38
HaeIII	GGCC	2 cut(s)	88, 419
HapII	CCGG	1 cut(s)	242
HhaI	GCGC	1 cut(s)	37
Hin1I	GRCGYC	1 cut(s)	35
Hin1II	CATG	1 cut(s)	169
Hin6I	GCGC	1 cut(s)	35
HinP1I	GCGC	1 cut(s)	35
HincII	GTYRAC	1 cut(s)	52
HindII	GTYRAC	1 cut(s)	52
HpaII	CCGG	1 cut(s)	242
HphI	GGTGA	2 cut(s)	227, 263
Hpy166II	GTNNAC	1 cut(s)	52
Hpy188I	TCNGA	5 cut(s)	108, 156, 207, 363, 505
Hpy188III	TCNNGA	2 cut(s)	318, 433
Hpy8I	GTNNAC	1 cut(s)	52
HpyAV	CCTTC	3 cut(s)	202, 306, 386
HpyCH4III	ACNGT	1 cut(s)	188
HpyCH4V	TGCA	1 cut(s)	43
HpyF10VI	GCNNNNNNNGC	1 cut(s)	34
HpyF3I	CTNAG	4 cut(s)	92, 107, 328, 504
Hsp92I	GRCGYC	1 cut(s)	35
Hsp92II	CATG	1 cut(s)	169
HspAI	GCGC	1 cut(s)	35
KasI	GGCGCC	1 cut(s)	34
Kzo9I	GATC	6 cut(s)	70, 103, 143, 202, 320, 517
LmnI	GCTCC	1 cut(s)	279
LpnPI	CCDG	7 cut(s)	5, 17, 32, 44, 255, 318, 400
LweI	GCATC	1 cut(s)	512
MalI	GATC	6 cut(s)	72, 105, 145, 204, 322, 519
MboI	GATC	6 cut(s)	70, 103, 143, 202, 320, 517
MboII	GAAGA	7 cut(s)	71, 244, 247, 281, 306, 348, 463
MflI	RGATCY	3 cut(s)	103, 143, 202
MluCI	AATT	2 cut(s)	410, 492
Mly113I	GGCGCC	1 cut(s)	35
MspA1I	CMGCKG	1 cut(s)	332
MspI	CCGG	1 cut(s)	242
MspR9I	CCNGG	2 cut(s)	20, 32
MvaI	CCWGG	2 cut(s)	20, 32
MwoI	GCNNNNNNNGC	1 cut(s)	34
NarI	GGCGCC	1 cut(s)	35
NdeII	GATC	6 cut(s)	70, 103, 143, 202, 320, 517
NlaIII	CATG	1 cut(s)	169
NlaIV	GGNNCC	1 cut(s)	36
NspI	RCATGY	1 cut(s)	169
PaeR7I	CTCGAG	1 cut(s)	433
PluTI	GGCGCC	1 cut(s)	38
Psp6I	CCWGG	2 cut(s)	18, 30
PspGI	CCWGG	2 cut(s)	18, 30
PspN4I	GGNNCC	1 cut(s)	36
PspPI	GGNCC	2 cut(s)	86, 417
PsuI	RGATCY	3 cut(s)	103, 143, 202
PvuII	CAGCTG	1 cut(s)	332
Sau3AI	GATC	6 cut(s)	70, 103, 143, 202, 320, 517
Sau96I	GGNCC	2 cut(s)	86, 417
ScrFI	CCNGG	2 cut(s)	20, 32
SetI	ASST	7 cut(s)	9, 21, 49, 284, 310, 334, 465
SfaNI	GCATC	1 cut(s)	512
SfoI	GGCGCC	1 cut(s)	36
Sfr274I	CTCGAG	1 cut(s)	433
SlaI	CTCGAG	1 cut(s)	433
SmlI	CTYRAG	1 cut(s)	433
SmoI	CTYRAG	1 cut(s)	433
Sse9I	AATT	2 cut(s)	410, 492
SsiI	CCGC	2 cut(s)	133, 525
SspDI	GGCGCC	1 cut(s)	34
StyD4I	CCNGG	2 cut(s)	18, 30
TaaI	ACNGT	1 cut(s)	188
TaqI	TCGA	4 cut(s)	78, 344, 434, 520
TasI	AATT	2 cut(s)	410, 492
TscAI	CASTG	2 cut(s)	96, 191
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	2 cut(s)	96, 191
XapI	RAATTY	1 cut(s)	410
XceI	RCATGY	1 cut(s)	169
XhoI	CTCGAG	1 cut(s)	433

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.