Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8019462.1

Orthogroup ID

OG0002353

Physical Location & Seq

Genomic Coordinates Reverse (-)

11 .. 334

Gene Structure 324 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8019462.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 324 bp

atgaagggagggagtcaaaaggagtctttgaatttggggacggagccggcgacccagaaagccaagggggcaagtgggtctgctccggggaagaagccggtggccgggaaaccagccaacggagtcgggaagcggcggatggctccgtcgcttcacgagctgcattacactgctaatagagctcaggcggaggaaatgaggaagaagacttacttgccctacaggcaaggattgcttggatgcttgggttttagctcaaaggggtatggagctgccatgagtactgggtttgctagagcactaaacccagtctcttccaggtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1645

Protein Analysis

107

Amino Acids

11.21

Weight (kDa)

10.42

Isoelectric Point (pI)

45.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002353)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G62630
fragaria_vesca	FvH4_6g07220 FvH4_6g07220 FvH4_6g07220
malus_domestica	MD04G1195400.v1.1 MD12G1207500.v1.1
prunus_persica	Prupe.6G315100_v2.0.a1
pyrus_communis	pycom04g17260 pycom12g19510 pycom15g32780
rosa_chinensis	RchiOBHm_Chr1g0333511 RchiOBHm_Chr1g0352421 RchiOBHm_Chr2g0129671 RchiOBHm_Chr3g0456851 RchiOBHm_Chr5g0038721 RchiOBHm_Chr6g0249361
rosa_laevigata	RLG00000023272 RLG00000025274
rosa_multiflora	Rmu_co8019462.1_g000001 Rmu_sc0000133.1_g000019 Rmu_sc0000741.1_g000014 Rmu_sc0001016.1_g000061 Rmu_sc0001890.1_g000010 Rmu_sc0002095.1_g000008 Rmu_sc0002955.1_g000021 Rmu_sc0005500.1_g000015 Rmu_sc0010617.1_g000006 Rmu_sc0020548.1_g000004 Rmu_sc0020548.1_g000005 Rmu_sc0033338.1_g000001
rosa_roxburghii	Rroxscaffold_3G00223580 Rroxscaffold_6G00422440
rosa_rugosa	Rorug03G0016400
rosa_samantha	Rh1AG132800 Rh1AG157400 Rh1CG147200 Rh3AG076700 Rh3BG078500 Rh3CG078300 Rh3DG080300 Rh4DG243900
rosa_wichuraiana	Rw3G006580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	133, 136, 188
AcoI	YGGCCR	1 cut(s)	102
AcsI	RAATTY	1 cut(s)	31
AfaI	GTAC	1 cut(s)	283
AfiI	CCNNNNNNNGG	2 cut(s)	104, 119
AgsI	TTSAA	1 cut(s)	31
AjnI	CCWGG	1 cut(s)	317
AluBI	AGCT	4 cut(s)	160, 182, 255, 272
AluI	AGCT	4 cut(s)	160, 182, 255, 272
Alw21I	GWGCWC	2 cut(s)	184, 301
Alw26I	GTCTC	1 cut(s)	316
AoxI	GGCC	1 cut(s)	102
ApeKI	GCWGC	2 cut(s)	160, 272
ApoI	RAATTY	1 cut(s)	31
AsuC2I	CCSGG	2 cut(s)	87, 106
BanII	GRGCYC	1 cut(s)	184
BarI	GAAGNNNNNNTAC	2 cut(s)	194, 226
BauI	CACGAG	1 cut(s)	155
BbsI	GAAGAC	1 cut(s)	212
Bbv12I	GWGCWC	2 cut(s)	184, 301
BbvI	GCAGC	2 cut(s)	147, 259
BccI	CCATC	1 cut(s)	133
BciT130I	CCWGG	1 cut(s)	319
BcnI	CCSGG	2 cut(s)	87, 106
BcoDI	GTCTC	1 cut(s)	316
BfaI	CTAG	1 cut(s)	294
BfmI	CTRYAG	1 cut(s)	220
BglI	GCCNNNNNGGC	2 cut(s)	68, 223
BisI	GCNGC	3 cut(s)	134, 161, 273
BlsI	GCNGC	3 cut(s)	135, 162, 274
BmcAI	AGTACT	1 cut(s)	283
Bme1390I	CCNGG	3 cut(s)	87, 106, 319
BmiI	GGNNCC	2 cut(s)	45, 144
BmrFI	CCNGG	3 cut(s)	87, 106, 319
BmrI	ACTGGG	2 cut(s)	294, 302
BmsI	GCATC	1 cut(s)	230
BmuI	ACTGGG	2 cut(s)	294, 302
BpiI	GAAGAC	1 cut(s)	212
Bpu10I	CCTNAGC	1 cut(s)	183
BpuMI	CCSGG	2 cut(s)	87, 106
BsaJI	CCNNGG	2 cut(s)	63, 86
Bsc4I	CCNNNNNNNGG	2 cut(s)	104, 119
Bse118I	RCCGGY	2 cut(s)	46, 97
Bse1I	ACTGG	2 cut(s)	289, 308
BseBI	CCWGG	1 cut(s)	319
BseDI	CCNNGG	2 cut(s)	63, 86
BseGI	GGATG	2 cut(s)	144, 245
BseLI	CCNNNNNNNGG	2 cut(s)	104, 119
BseMII	CTCAG	1 cut(s)	197
BseNI	ACTGG	2 cut(s)	289, 308
BseXI	GCAGC	2 cut(s)	147, 259
BshFI	GGCC	1 cut(s)	104
BsiHKAI	GWGCWC	2 cut(s)	184, 301
BsiSI	CCGG	4 cut(s)	47, 86, 98, 105
BslFI	GGGAC	1 cut(s)	52
BslI	CCNNNNNNNGG	2 cut(s)	104, 119
BsmAI	GTCTC	1 cut(s)	316
BsmFI	GGGAC	1 cut(s)	52
BsnI	GGCC	1 cut(s)	104
Bsp1286I	GDGCHC	2 cut(s)	184, 301
BspACI	CCGC	3 cut(s)	133, 136, 188
BspANI	GGCC	1 cut(s)	104
BspCNI	CTCAG	1 cut(s)	196
BspLI	GGNNCC	2 cut(s)	45, 144
BsrFI	RCCGGY	2 cut(s)	46, 97
BsrI	ACTGG	2 cut(s)	289, 308
BssAI	RCCGGY	2 cut(s)	46, 97
BssECI	CCNNGG	2 cut(s)	63, 86
BssSI	CACGAG	1 cut(s)	155
BssT1I	CCWWGG	1 cut(s)	63
Bst2BI	CACGAG	1 cut(s)	155
Bst2UI	CCWGG	1 cut(s)	319
Bst6I	CTCTTC	1 cut(s)	319
BstAPI	GCANNNNNTGC	1 cut(s)	232
BstC8I	GCNNGC	1 cut(s)	48
BstDEI	CTNAG	1 cut(s)	183
BstF5I	GGATG	2 cut(s)	144, 245
BstMAI	GTCTC	1 cut(s)	316
BstMWI	GCNNNNNNNGC	5 cut(s)	68, 157, 179, 223, 232
BstNI	CCWGG	1 cut(s)	319
BstSCI	CCNGG	3 cut(s)	85, 104, 317
BstSFI	CTRYAG	1 cut(s)	220
BstV1I	GCAGC	2 cut(s)	147, 259
BstV2I	GAAGAC	1 cut(s)	212
BsuRI	GGCC	1 cut(s)	104
BtsCI	GGATG	2 cut(s)	144, 245
BtsI	GCAGTG	1 cut(s)	168
BtsIMutI	CAGTG	1 cut(s)	168
Cac8I	GCNNGC	1 cut(s)	48
Cfr10I	RCCGGY	2 cut(s)	46, 97
Csp6I	GTAC	1 cut(s)	282
CviAII	CATG	1 cut(s)	277
CviQI	GTAC	1 cut(s)	282
DdeI	CTNAG	1 cut(s)	183
EaeI	YGGCCR	1 cut(s)	102
Eam1104I	CTCTTC	1 cut(s)	319
EarI	CTCTTC	1 cut(s)	319
EciI	GGCGGA	2 cut(s)	151, 203
Ecl136II	GAGCTC	1 cut(s)	182
Eco130I	CCWWGG	1 cut(s)	63
Eco24I	GRGCYC	1 cut(s)	184
Eco53kI	GAGCTC	1 cut(s)	182
EcoICRI	GAGCTC	1 cut(s)	182
EcoRII	CCWGG	1 cut(s)	317
EcoT14I	CCWWGG	1 cut(s)	63
EcoT38I	GRGCYC	1 cut(s)	184
ErhI	CCWWGG	1 cut(s)	63
FaeI	CATG	1 cut(s)	280
FaiI	YATR	2 cut(s)	267, 278
FalI	AAGNNNNNCTT	4 cut(s)	197, 229, 219, 251
FaqI	GGGAC	1 cut(s)	52
FatI	CATG	1 cut(s)	276
Fnu4HI	GCNGC	3 cut(s)	134, 161, 273
FokI	GGATG	2 cut(s)	151, 252
FriOI	GRGCYC	1 cut(s)	184
Fsp4HI	GCNGC	3 cut(s)	134, 161, 273
FspBI	CTAG	1 cut(s)	294
GluI	GCNGC	3 cut(s)	134, 161, 273
HaeIII	GGCC	1 cut(s)	104
HapII	CCGG	4 cut(s)	47, 86, 98, 105
Hin1II	CATG	1 cut(s)	280
HinfI	GANTC	3 cut(s)	13, 23, 123
HpaII	CCGG	4 cut(s)	47, 86, 98, 105
Hpy188III	TCNNGA	2 cut(s)	127, 155
Hpy99I	CGWCG	1 cut(s)	151
HpyCH4V	TGCA	1 cut(s)	163
HpyF10VI	GCNNNNNNNGC	5 cut(s)	68, 157, 179, 223, 232
HpyF3I	CTNAG	1 cut(s)	183
Hsp92II	CATG	1 cut(s)	280
KroI	GCCGGC	1 cut(s)	46
KroNI	GCCGGC	1 cut(s)	48
LmnI	GCTCC	4 cut(s)	43, 88, 148, 269
Lsp1109I	GCAGC	2 cut(s)	147, 259
LweI	GCATC	1 cut(s)	230
MaeI	CTAG	1 cut(s)	294
MboII	GAAGA	4 cut(s)	103, 214, 217, 306
MhlI	GDGCHC	2 cut(s)	184, 301
MluCI	AATT	1 cut(s)	31
MlyI	GAGTC	3 cut(s)	22, 32, 132
MnlI	CCTC	2 cut(s)	184, 192
MroNI	GCCGGC	1 cut(s)	46
MspI	CCGG	4 cut(s)	47, 86, 98, 105
MspR9I	CCNGG	3 cut(s)	87, 106, 319
MvaI	CCWGG	1 cut(s)	319
MwoI	GCNNNNNNNGC	5 cut(s)	68, 157, 179, 223, 232
NaeI	GCCGGC	1 cut(s)	48
NciI	CCSGG	2 cut(s)	87, 106
NgoMIV	GCCGGC	1 cut(s)	46
NlaIII	CATG	1 cut(s)	280
NlaIV	GGNNCC	2 cut(s)	45, 144
PcsI	WCGNNNNNNNCGW	1 cut(s)	47
PdiI	GCCGGC	1 cut(s)	48
PkrI	GCNGC	3 cut(s)	135, 162, 274
PleI	GAGTC	3 cut(s)	21, 31, 131
PpsI	GAGTC	3 cut(s)	21, 31, 131
Psp124BI	GAGCTC	1 cut(s)	184
Psp6I	CCWGG	1 cut(s)	317
PspGI	CCWGG	1 cut(s)	317
PspN4I	GGNNCC	2 cut(s)	45, 144
RsaI	GTAC	1 cut(s)	283
RsaNI	GTAC	1 cut(s)	282
SacI	GAGCTC	1 cut(s)	184
SatI	GCNGC	3 cut(s)	134, 161, 273
ScaI	AGTACT	1 cut(s)	283
SchI	GAGTC	3 cut(s)	22, 32, 132
ScrFI	CCNGG	3 cut(s)	87, 106, 319
SduI	GDGCHC	2 cut(s)	184, 301
SetI	ASST	5 cut(s)	162, 184, 257, 274, 323
SfaNI	GCATC	1 cut(s)	230
SfcI	CTRYAG	1 cut(s)	220
Sse9I	AATT	1 cut(s)	31
SsiI	CCGC	3 cut(s)	133, 136, 188
SspMI	CTAG	1 cut(s)	294
SstI	GAGCTC	1 cut(s)	184
StyD4I	CCNGG	3 cut(s)	85, 104, 317
StyI	CCWWGG	1 cut(s)	63
TasI	AATT	1 cut(s)	31
TatI	WGTACW	1 cut(s)	281
TauI	GCSGC	1 cut(s)	136
TscAI	CASTG	1 cut(s)	175
TseI	GCWGC	2 cut(s)	160, 272
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	3 cut(s)	56, 135, 135
TspRI	CASTG	1 cut(s)	175
XapI	RAATTY	1 cut(s)	31
XspI	CTAG	1 cut(s)	294
ZrmI	AGTACT	1 cut(s)	283

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.