Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0033338.1

Orthogroup ID

OG0002353

Physical Location & Seq

Genomic Coordinates Forward (+)

965 .. 1714

Gene Structure 750 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0033338.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 750 bp

atggagctcaaaccaacctccaacaatggccatagctcaacccctgaaccaaacctcgaccttccaaaccctagcaatggcgaaacccacaaaacgcacgacccccatttcttctacgaagacattgacagcaactgctccaccccttacgtcagcgctccctccagccccggccgcggacccatcagcggtttcttctacagtgcaccggcgagcccaatgcactttgtcctctcttcaaattcactcaactcacccaactcttcttcgtttgacacggcggcgtcggagttcgagttctcagctcggttcgggtcgaatggatctactgcgaccgggccgatgagctcggcggatgagctgttcttgaatggaaagatccggcccatgaagctctccacccacctggaaaagccccaggcgccgttgcaagctgtcaacgaggaggatggagatgatctattcgagttcgggccgctgagaggcagagatctgaggatgagggacaagtctctgcggcggagaacgagatccatgtctcccatgagaaacctgccatttgattgcgagatttacggcgaaaatgaaatcagtaataatgactgttgctttgcggaagatctgaaggagggtgatttggggaagaagaagaagccggagaatggtgaggaggaggaggaggaagaagttgggagcttggagactactccgtcggtttcggcttcgtcttcaagatcatcctcagctgga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1645

Protein Analysis

250

Amino Acids

27.27

Weight (kDa)

4.78

Isoelectric Point (pI)

60.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002353)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G62630
fragaria_vesca	FvH4_6g07220 FvH4_6g07220 FvH4_6g07220
malus_domestica	MD04G1195400.v1.1 MD12G1207500.v1.1
prunus_persica	Prupe.6G315100_v2.0.a1
pyrus_communis	pycom04g17260 pycom12g19510 pycom15g32780
rosa_chinensis	RchiOBHm_Chr1g0333511 RchiOBHm_Chr1g0352421 RchiOBHm_Chr2g0129671 RchiOBHm_Chr3g0456851 RchiOBHm_Chr5g0038721 RchiOBHm_Chr6g0249361
rosa_laevigata	RLG00000023272 RLG00000025274
rosa_multiflora	Rmu_co8019462.1_g000001 Rmu_sc0000133.1_g000019 Rmu_sc0000741.1_g000014 Rmu_sc0001016.1_g000061 Rmu_sc0001890.1_g000010 Rmu_sc0002095.1_g000008 Rmu_sc0002955.1_g000021 Rmu_sc0005500.1_g000015 Rmu_sc0010617.1_g000006 Rmu_sc0020548.1_g000004 Rmu_sc0020548.1_g000005 Rmu_sc0033338.1_g000001
rosa_roxburghii	Rroxscaffold_3G00223580 Rroxscaffold_6G00422440
rosa_rugosa	Rorug03G0016400
rosa_samantha	Rh1AG132800 Rh1AG157400 Rh1CG147200 Rh3AG076700 Rh3BG078500 Rh3CG078300 Rh3DG080300 Rh4DG243900
rosa_wichuraiana	Rw3G006580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	709
Acc36I	ACCTGC	1 cut(s)	561
AccB1I	GGYRCC	1 cut(s)	421
AccII	CGCG	1 cut(s)	177
AciI	CCGC	9 cut(s)	175, 177, 189, 281, 353, 476, 517, 520, 614
AclWI	GGATC	3 cut(s)	331, 373, 525
AcoI	YGGCCR	2 cut(s)	28, 172
AcsI	RAATTY	1 cut(s)	241
AcuI	CTGAAG	1 cut(s)	644
AcyI	GRCGYC	2 cut(s)	284, 422
AfeI	AGCGCT	1 cut(s)	157
AfiI	CCNNNNNNNGG	5 cut(s)	77, 176, 188, 482, 662
AgsI	TTSAA	3 cut(s)	240, 370, 732
AjnI	CCWGG	2 cut(s)	405, 417
AloI	GAACNNNNNNTCC	4 cut(s)	281, 313, 347, 379
AluBI	AGCT	9 cut(s)	7, 36, 305, 348, 361, 394, 434, 696, 746
AluI	AGCT	9 cut(s)	7, 36, 305, 348, 361, 394, 434, 696, 746
Alw21I	GWGCWC	3 cut(s)	9, 208, 350
Alw26I	GTCTC	3 cut(s)	516, 543, 695
Alw44I	GTGCAC	1 cut(s)	204
AlwI	GGATC	3 cut(s)	331, 373, 525
AlwNI	CAGNNNCTG	1 cut(s)	135
Aor51HI	AGCGCT	1 cut(s)	157
AoxI	GGCC	5 cut(s)	28, 172, 338, 383, 473
ApaLI	GTGCAC	1 cut(s)	204
ApoI	RAATTY	1 cut(s)	241
ArsI	GACNNNNNNTTYG	2 cut(s)	593, 625
AspLEI	GCGC	2 cut(s)	158, 424
AspS9I	GGNCC	4 cut(s)	179, 338, 384, 473
AsuC2I	CCSGG	2 cut(s)	171, 337
AsuHPI	GGTGA	3 cut(s)	246, 644, 677
AvaII	GGWCC	1 cut(s)	179
BaeGI	GKGCMC	1 cut(s)	208
BalI	TGGCCA	1 cut(s)	30
BanI	GGYRCC	1 cut(s)	421
BanII	GRGCYC	3 cut(s)	9, 218, 350
BbsI	GAAGAC	2 cut(s)	126, 720
Bbv12I	GWGCWC	3 cut(s)	9, 208, 350
BbvCI	CCTCAGC	1 cut(s)	742
BccI	CCATC	2 cut(s)	191, 443
BceAI	ACGGC	3 cut(s)	294, 409, 592
BcgI	CGANNNNNNTGC	2 cut(s)	202, 236
BciT130I	CCWGG	2 cut(s)	407, 419
BcnI	CCSGG	2 cut(s)	171, 337
BcoDI	GTCTC	3 cut(s)	516, 543, 695
BfaI	CTAG	1 cut(s)	72
BfmI	CTRYAG	1 cut(s)	199
BfoI	RGCGCY	2 cut(s)	159, 425
BfuAI	ACCTGC	1 cut(s)	561
BglII	AGATCT	2 cut(s)	490, 619
BisI	GCNGC	4 cut(s)	175, 282, 476, 518
BlsI	GCNGC	4 cut(s)	176, 283, 477, 519
Bme1390I	CCNGG	4 cut(s)	171, 337, 407, 419
Bme18I	GGWCC	1 cut(s)	179
BmgT120I	GGNCC	4 cut(s)	179, 338, 384, 473
BmiI	GGNNCC	2 cut(s)	181, 423
BmrFI	CCNGG	4 cut(s)	171, 337, 407, 419
BpiI	GAAGAC	2 cut(s)	126, 720
BpmI	CTGGAG	1 cut(s)	148
Bpu10I	CCTNAGC	1 cut(s)	742
BpuMI	CCSGG	2 cut(s)	171, 337
BsaHI	GRCGYC	2 cut(s)	284, 422
BsaJI	CCNNGG	3 cut(s)	169, 175, 417
BsaXI	ACNNNNNCTCC	2 cut(s)	281, 311
Bsc4I	CCNNNNNNNGG	5 cut(s)	77, 176, 188, 482, 662
Bse118I	RCCGGY	1 cut(s)	208
Bse3DI	GCAATG	1 cut(s)	82
BseBI	CCWGG	2 cut(s)	407, 419
BseDI	CCNNGG	3 cut(s)	169, 175, 417
BseGI	GGATG	4 cut(s)	361, 454, 504, 737
BseLI	CCNNNNNNNGG	5 cut(s)	77, 176, 188, 482, 662
BseMI	GCAATG	1 cut(s)	82
BseMII	CTCAG	3 cut(s)	315, 470, 485
BseRI	GAGGAG	5 cut(s)	458, 683, 686, 689, 692
BseSI	GKGCMC	1 cut(s)	208
BseX3I	CGGCCG	1 cut(s)	172
Bsh1236I	CGCG	1 cut(s)	177
Bsh1285I	CGRYCG	2 cut(s)	175, 336
BshFI	GGCC	5 cut(s)	30, 174, 340, 385, 475
BshNI	GGYRCC	1 cut(s)	421
BsiEI	CGRYCG	2 cut(s)	175, 336
BsiHKAI	GWGCWC	3 cut(s)	9, 208, 350
BsiSI	CCGG	5 cut(s)	171, 209, 336, 382, 656
BslFI	GGGAC	1 cut(s)	518
BslI	CCNNNNNNNGG	5 cut(s)	77, 176, 188, 482, 662
BsmAI	GTCTC	3 cut(s)	516, 543, 695
BsmFI	GGGAC	1 cut(s)	518
BsnI	GGCC	5 cut(s)	30, 174, 340, 385, 475
Bsp1286I	GDGCHC	4 cut(s)	9, 208, 218, 350
Bsp143I	GATC	7 cut(s)	323, 378, 457, 490, 530, 619, 734
BspACI	CCGC	9 cut(s)	175, 177, 189, 281, 353, 476, 517, 520, 614
BspANI	GGCC	5 cut(s)	30, 174, 340, 385, 475
BspCNI	CTCAG	3 cut(s)	314, 471, 486
BspFNI	CGCG	1 cut(s)	177
BspLI	GGNNCC	2 cut(s)	181, 423
BspMI	ACCTGC	1 cut(s)	561
BspPI	GGATC	3 cut(s)	331, 373, 525
BspT107I	GGYRCC	1 cut(s)	421
BsrDI	GCAATG	1 cut(s)	82
BsrFI	RCCGGY	1 cut(s)	208
BssAI	RCCGGY	1 cut(s)	208
BssECI	CCNNGG	3 cut(s)	169, 175, 417
BssMI	GATC	7 cut(s)	323, 378, 457, 490, 530, 619, 734
BssNI	GRCGYC	2 cut(s)	284, 422
Bst2UI	CCWGG	2 cut(s)	407, 419
Bst4CI	ACNGT	2 cut(s)	203, 605
Bst6I	CTCTTC	2 cut(s)	241, 268
BstACI	GRCGYC	2 cut(s)	284, 422
BstC8I	GCNNGC	2 cut(s)	214, 432
BstDEI	CTNAG	4 cut(s)	301, 479, 494, 742
BstDSI	CCRYGG	1 cut(s)	175
BstF5I	GGATG	4 cut(s)	361, 454, 504, 737
BstFNI	CGCG	1 cut(s)	177
BstH2I	RGCGCY	2 cut(s)	159, 425
BstHHI	GCGC	2 cut(s)	158, 424
BstKTI	GATC	7 cut(s)	326, 381, 460, 493, 533, 622, 737
BstMAI	GTCTC	3 cut(s)	516, 543, 695
BstMBI	GATC	7 cut(s)	323, 378, 457, 490, 530, 619, 734
BstMCI	CGRYCG	2 cut(s)	175, 336
BstMWI	GCNNNNNNNGC	3 cut(s)	174, 391, 421
BstNI	CCWGG	2 cut(s)	407, 419
BstSCI	CCNGG	4 cut(s)	169, 335, 405, 417
BstSFI	CTRYAG	1 cut(s)	199
BstSLI	GKGCMC	1 cut(s)	208
BstUI	CGCG	1 cut(s)	177
BstV2I	GAAGAC	2 cut(s)	126, 720
BstX2I	RGATCY	5 cut(s)	323, 378, 490, 530, 619
BstXI	CCANNNNNNTGG	1 cut(s)	406
BstYI	RGATCY	5 cut(s)	323, 378, 490, 530, 619
BstZI	CGGCCG	1 cut(s)	172
BsuRI	GGCC	5 cut(s)	30, 174, 340, 385, 475
BtgI	CCRYGG	1 cut(s)	175
BtsCI	GGATG	4 cut(s)	361, 454, 504, 737
BtsIMutI	CAGTG	1 cut(s)	208
BveI	ACCTGC	1 cut(s)	561
Cac8I	GCNNGC	2 cut(s)	214, 432
CaiI	CAGNNNCTG	1 cut(s)	135
CfoI	GCGC	2 cut(s)	158, 424
Cfr10I	RCCGGY	1 cut(s)	208
Cfr13I	GGNCC	4 cut(s)	179, 338, 384, 473
Cfr42I	CCGCGG	1 cut(s)	178
CseI	GACGC	1 cut(s)	273
CviAII	CATG	3 cut(s)	388, 535, 544
DdeI	CTNAG	4 cut(s)	301, 479, 494, 742
DinI	GGCGCC	1 cut(s)	423
DpnI	GATC	7 cut(s)	325, 380, 459, 492, 532, 621, 736
DpnII	GATC	7 cut(s)	323, 378, 457, 490, 530, 619, 734
DrdI	GACNNNNNNGTC	1 cut(s)	709
DseDI	GACNNNNNNGTC	1 cut(s)	709
EaeI	YGGCCR	2 cut(s)	28, 172
EagI	CGGCCG	1 cut(s)	172
Eam1104I	CTCTTC	2 cut(s)	241, 268
EarI	CTCTTC	2 cut(s)	241, 268
EciI	GGCGGA	2 cut(s)	368, 535
Ecl136II	GAGCTC	2 cut(s)	7, 348
EclXI	CGGCCG	1 cut(s)	172
Eco24I	GRGCYC	3 cut(s)	9, 218, 350
Eco47I	GGWCC	1 cut(s)	179
Eco47III	AGCGCT	1 cut(s)	157
Eco52I	CGGCCG	1 cut(s)	172
Eco53kI	GAGCTC	2 cut(s)	7, 348
Eco57I	CTGAAG	1 cut(s)	644
EcoICRI	GAGCTC	2 cut(s)	7, 348
EcoRII	CCWGG	2 cut(s)	405, 417
EcoT38I	GRGCYC	3 cut(s)	9, 218, 350
EgeI	GGCGCC	1 cut(s)	423
EheI	GGCGCC	1 cut(s)	423
FaeI	CATG	3 cut(s)	391, 538, 547
FaiI	YATR	4 cut(s)	33, 389, 536, 545
FaqI	GGGAC	1 cut(s)	518
FatI	CATG	3 cut(s)	387, 534, 543
Fnu4HI	GCNGC	4 cut(s)	175, 282, 476, 518
FokI	GGATG	4 cut(s)	368, 461, 511, 724
FriOI	GRGCYC	3 cut(s)	9, 218, 350
Fsp4HI	GCNGC	4 cut(s)	175, 282, 476, 518
FspBI	CTAG	1 cut(s)	72
GlaI	GCGC	2 cut(s)	157, 423
GluI	GCNGC	4 cut(s)	175, 282, 476, 518
GsuI	CTGGAG	1 cut(s)	148
HaeII	RGCGCY	2 cut(s)	159, 425
HaeIII	GGCC	5 cut(s)	30, 174, 340, 385, 475
HapII	CCGG	5 cut(s)	171, 209, 336, 382, 656
HgaI	GACGC	1 cut(s)	273
HhaI	GCGC	2 cut(s)	158, 424
Hin1I	GRCGYC	2 cut(s)	284, 422
Hin1II	CATG	3 cut(s)	391, 538, 547
Hin6I	GCGC	2 cut(s)	156, 422
HinP1I	GCGC	2 cut(s)	156, 422
HincII	GTYRAC	1 cut(s)	439
HindII	GTYRAC	1 cut(s)	439
HpaII	CCGG	5 cut(s)	171, 209, 336, 382, 656
HphI	GGTGA	3 cut(s)	246, 644, 677
Hpy166II	GTNNAC	2 cut(s)	206, 439
Hpy188I	TCNGA	3 cut(s)	289, 495, 624
Hpy188III	TCNNGA	2 cut(s)	367, 732
Hpy8I	GTNNAC	2 cut(s)	206, 439
Hpy99I	CGWCG	2 cut(s)	289, 715
HpyAV	CCTTC	2 cut(s)	71, 619
HpyCH4III	ACNGT	2 cut(s)	203, 605
HpyCH4IV	ACGT	1 cut(s)	150
HpyCH4V	TGCA	3 cut(s)	206, 223, 430
HpyF10VI	GCNNNNNNNGC	3 cut(s)	174, 391, 421
HpyF3I	CTNAG	4 cut(s)	301, 479, 494, 742
HpySE526I	ACGT	1 cut(s)	150
Hsp92I	GRCGYC	2 cut(s)	284, 422
Hsp92II	CATG	3 cut(s)	391, 538, 547
HspAI	GCGC	2 cut(s)	156, 422
KasI	GGCGCC	1 cut(s)	421
KspI	CCGCGG	1 cut(s)	178
Kzo9I	GATC	7 cut(s)	323, 378, 457, 490, 530, 619, 734
LmnI	GCTCC	4 cut(s)	4, 143, 163, 693
MaeI	CTAG	1 cut(s)	72
MaeII	ACGT	1 cut(s)	150
MalI	GATC	7 cut(s)	325, 380, 459, 492, 532, 621, 736
MboI	GATC	7 cut(s)	323, 378, 457, 490, 530, 619, 734
MflI	RGATCY	5 cut(s)	323, 378, 490, 530, 619
MhlI	GDGCHC	4 cut(s)	9, 208, 218, 350
MlsI	TGGCCA	1 cut(s)	30
MluCI	AATT	1 cut(s)	241
MluNI	TGGCCA	1 cut(s)	30
Mly113I	GGCGCC	1 cut(s)	422
MmeI	TCCRAC	2 cut(s)	45, 267
Mox20I	TGGCCA	1 cut(s)	30
MscI	TGGCCA	1 cut(s)	30
Msp20I	TGGCCA	1 cut(s)	30
MspA1I	CMGCKG	4 cut(s)	177, 189, 478, 746
MspI	CCGG	5 cut(s)	171, 209, 336, 382, 656
MspR9I	CCNGG	4 cut(s)	171, 337, 407, 419
MvaI	CCWGG	2 cut(s)	407, 419
MvnI	CGCG	1 cut(s)	177
MwoI	GCNNNNNNNGC	3 cut(s)	174, 391, 421
NarI	GGCGCC	1 cut(s)	422
NciI	CCSGG	2 cut(s)	171, 337
NdeII	GATC	7 cut(s)	323, 378, 457, 490, 530, 619, 734
NlaIII	CATG	3 cut(s)	391, 538, 547
NlaIV	GGNNCC	2 cut(s)	181, 423
NmeAIII	GCCGAG	1 cut(s)	329
PkrI	GCNGC	4 cut(s)	176, 283, 477, 519
PluTI	GGCGCC	1 cut(s)	425
Psp124BI	GAGCTC	2 cut(s)	9, 350
Psp6I	CCWGG	2 cut(s)	405, 417
PspGI	CCWGG	2 cut(s)	405, 417
PspN4I	GGNNCC	2 cut(s)	181, 423
PspPI	GGNCC	4 cut(s)	179, 338, 384, 473
PstNI	CAGNNNCTG	1 cut(s)	135
PsuI	RGATCY	5 cut(s)	323, 378, 490, 530, 619
PvuII	CAGCTG	1 cut(s)	746
SacI	GAGCTC	2 cut(s)	9, 350
SacII	CCGCGG	1 cut(s)	178
SatI	GCNGC	4 cut(s)	175, 282, 476, 518
Sau3AI	GATC	7 cut(s)	323, 378, 457, 490, 530, 619, 734
Sau96I	GGNCC	4 cut(s)	179, 338, 384, 473
ScrFI	CCNGG	4 cut(s)	171, 337, 407, 419
SduI	GDGCHC	4 cut(s)	9, 208, 218, 350
SfcI	CTRYAG	1 cut(s)	199
SfoI	GGCGCC	1 cut(s)	423
Sfr303I	CCGCGG	1 cut(s)	178
SgrAI	CRCCGGYG	1 cut(s)	208
SgrBI	CCGCGG	1 cut(s)	178
SinI	GGWCC	1 cut(s)	179
Sse9I	AATT	1 cut(s)	241
SsiI	CCGC	9 cut(s)	175, 177, 189, 281, 353, 476, 517, 520, 614
SspDI	GGCGCC	1 cut(s)	421
SspMI	CTAG	1 cut(s)	72
SstI	GAGCTC	2 cut(s)	9, 350
StyD4I	CCNGG	4 cut(s)	169, 335, 405, 417
TaaI	ACNGT	2 cut(s)	203, 605
TaiI	ACGT	1 cut(s)	153
TaqI	TCGA	4 cut(s)	57, 294, 317, 465
TasI	AATT	1 cut(s)	241
TauI	GCSGC	4 cut(s)	177, 284, 478, 520
TscAI	CASTG	1 cut(s)	208
TspDTI	ATGAA	2 cut(s)	404, 600
TspGWI	ACGGA	1 cut(s)	699
TspRI	CASTG	1 cut(s)	208
VneI	GTGCAC	1 cut(s)	204
VpaK11BI	GGWCC	1 cut(s)	179
XapI	RAATTY	1 cut(s)	241
XspI	CTAG	1 cut(s)	72

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.