Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001016.1

Orthogroup ID

OG0002353

Physical Location & Seq

Genomic Coordinates Reverse (-)

241019 .. 241816

Gene Structure 798 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001016.1_g000061.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 798 bp

ctgaaacggtgccaattcgaggagcttgtagattttctggtggagattccgaccggagatcgaacttggaatccccttgttgctcgtcggacatcatctcgtataaggtctcgtataagatcatcacccaactcttcttcgtttgatatggcggcgtcagagttcgagttctcagctcgattcgggtcgaatggatctactgctacctggccgatgagctctgcatatgagctgttcttgaatggaaagatccagcccatgaggctctccacccacctagaaaagccccaagagccgttgcaagctgtcaacgaggaagatggagatgatctattcgagttcgggccactgagaggcagagatctgaggatgagggacaagtctctgtggcggagaacgagatccaagtctccgatgagaaacatgccctttagtaataatgattgttgctttgcgaaagatctgaaggagggtgatttggggaaaaagaagaagataccggagaatggtgaggaggaggaggaggaggaagaagttgggagcttggagactactccttcggtttcagcttcgtcttcaagatcatcctcagctggaagaaactcgaaaagattggtctttctgaaagattttctccacaggagtaaaagtgaagggaggagtaataacaaattctgggccacaatctcattctcgagtagtggtaaggagaagaaaatagaggttagtgttgggggagaaaataggcagaaaattggcttgtccgagacaagtgttgatcgatacggtagaaaatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1645

Protein Analysis

265

Amino Acids

30.04

Weight (kDa)

9.22

Isoelectric Point (pI)

58.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002353)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G62630
fragaria_vesca	FvH4_6g07220 FvH4_6g07220 FvH4_6g07220
malus_domestica	MD04G1195400.v1.1 MD12G1207500.v1.1
prunus_persica	Prupe.6G315100_v2.0.a1
pyrus_communis	pycom04g17260 pycom12g19510 pycom15g32780
rosa_chinensis	RchiOBHm_Chr1g0333511 RchiOBHm_Chr1g0352421 RchiOBHm_Chr2g0129671 RchiOBHm_Chr3g0456851 RchiOBHm_Chr5g0038721 RchiOBHm_Chr6g0249361
rosa_laevigata	RLG00000023272 RLG00000025274
rosa_multiflora	Rmu_co8019462.1_g000001 Rmu_sc0000133.1_g000019 Rmu_sc0000741.1_g000014 Rmu_sc0001016.1_g000061 Rmu_sc0001890.1_g000010 Rmu_sc0002095.1_g000008 Rmu_sc0002955.1_g000021 Rmu_sc0005500.1_g000015 Rmu_sc0010617.1_g000006 Rmu_sc0020548.1_g000004 Rmu_sc0020548.1_g000005 Rmu_sc0033338.1_g000001
rosa_roxburghii	Rroxscaffold_3G00223580 Rroxscaffold_6G00422440
rosa_rugosa	Rorug03G0016400
rosa_samantha	Rh1AG132800 Rh1AG157400 Rh1CG147200 Rh3AG076700 Rh3BG078500 Rh3CG078300 Rh3DG080300 Rh4DG243900
rosa_wichuraiana	Rw3G006580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	9
AciI	CCGC	2 cut(s)	152, 391
AclWI	GGATC	3 cut(s)	202, 244, 396
AcoI	YGGCCR	1 cut(s)	209
AcsI	RAATTY	1 cut(s)	671
AcuI	CTGAAG	1 cut(s)	485
AcyI	GRCGYC	1 cut(s)	155
AfiI	CCNNNNNNNGG	3 cut(s)	19, 353, 506
AgsI	TTSAA	2 cut(s)	241, 579
AjnI	CCWGG	1 cut(s)	206
AloI	GAACNNNNNNTCC	2 cut(s)	55, 87
AluBI	AGCT	8 cut(s)	25, 176, 219, 232, 305, 543, 569, 593
AluI	AGCT	8 cut(s)	25, 176, 219, 232, 305, 543, 569, 593
Alw21I	GWGCWC	1 cut(s)	221
Alw26I	GTCTC	5 cut(s)	114, 387, 414, 542, 761
AlwI	GGATC	3 cut(s)	202, 244, 396
Ama87I	CYCGRG	1 cut(s)	694
AoxI	GGCC	3 cut(s)	209, 344, 678
ApoI	RAATTY	1 cut(s)	671
ArsI	GACNNNNNNTTYG	2 cut(s)	541, 573
AspS9I	GGNCC	2 cut(s)	344, 678
AsuHPI	GGTGA	3 cut(s)	117, 485, 521
AvaI	CYCGRG	1 cut(s)	694
BanI	GGYRCC	1 cut(s)	9
BanII	GRGCYC	1 cut(s)	221
BbsI	GAAGAC	1 cut(s)	567
Bbv12I	GWGCWC	1 cut(s)	221
BbvCI	CCTCAGC	1 cut(s)	589
BccI	CCATC	1 cut(s)	314
BceAI	ACGGC	1 cut(s)	280
BciT130I	CCWGG	1 cut(s)	208
BcoDI	GTCTC	5 cut(s)	114, 387, 414, 542, 761
BfaI	CTAG	1 cut(s)	278
BglI	GCCNNNNNGGC	1 cut(s)	262
BglII	AGATCT	2 cut(s)	361, 460
BisI	GCNGC	1 cut(s)	153
BlsI	GCNGC	1 cut(s)	154
Bme1390I	CCNGG	1 cut(s)	208
BmeT110I	CYCGRG	1 cut(s)	694
BmgT120I	GGNCC	2 cut(s)	344, 678
BmiI	GGNNCC	1 cut(s)	11
BmrFI	CCNGG	1 cut(s)	208
BpiI	GAAGAC	1 cut(s)	567
Bpu10I	CCTNAGC	1 cut(s)	589
Bsa29I	ATCGAT	1 cut(s)	781
BsaHI	GRCGYC	1 cut(s)	155
BsaI	GGTCTC	1 cut(s)	114
BsaWI	WCCGGW	2 cut(s)	53, 499
BsaXI	ACNNNNNCTCC	2 cut(s)	634, 664
Bsc4I	CCNNNNNNNGG	3 cut(s)	19, 353, 506
BseBI	CCWGG	1 cut(s)	208
BseCI	ATCGAT	1 cut(s)	781
BseGI	GGATG	2 cut(s)	375, 584
BseLI	CCNNNNNNNGG	3 cut(s)	19, 353, 506
BseMII	CTCAG	4 cut(s)	186, 341, 356, 603
BseRI	GAGGAG	7 cut(s)	35, 527, 530, 533, 536, 539, 673
Bsh1285I	CGRYCG	1 cut(s)	54
BshFI	GGCC	3 cut(s)	211, 346, 680
BshNI	GGYRCC	1 cut(s)	9
BshVI	ATCGAT	1 cut(s)	781
BsiEI	CGRYCG	1 cut(s)	54
BsiHKAI	GWGCWC	1 cut(s)	221
BsiHKCI	CYCGRG	1 cut(s)	694
BsiSI	CCGG	2 cut(s)	54, 500
BslFI	GGGAC	1 cut(s)	389
BslI	CCNNNNNNNGG	3 cut(s)	19, 353, 506
BsmAI	GTCTC	5 cut(s)	114, 387, 414, 542, 761
BsmFI	GGGAC	1 cut(s)	389
BsnI	GGCC	3 cut(s)	211, 346, 680
Bso31I	GGTCTC	1 cut(s)	114
BsoBI	CYCGRG	1 cut(s)	694
Bsp1286I	GDGCHC	1 cut(s)	221
BspACI	CCGC	2 cut(s)	152, 391
BspANI	GGCC	3 cut(s)	211, 346, 680
BspCNI	CTCAG	4 cut(s)	185, 342, 357, 602
BspDI	ATCGAT	1 cut(s)	781
BspLI	GGNNCC	1 cut(s)	11
BspPI	GGATC	3 cut(s)	202, 244, 396
BspT107I	GGYRCC	1 cut(s)	9
BspTNI	GGTCTC	1 cut(s)	114
BssNI	GRCGYC	1 cut(s)	155
Bst2UI	CCWGG	1 cut(s)	208
Bst4CI	ACNGT	2 cut(s)	9, 788
Bst6I	CTCTTC	1 cut(s)	139
BstACI	GRCGYC	1 cut(s)	155
BstC8I	GCNNGC	1 cut(s)	303
BstDEI	CTNAG	4 cut(s)	172, 350, 365, 589
BstF5I	GGATG	2 cut(s)	375, 584
BstMAI	GTCTC	5 cut(s)	114, 387, 414, 542, 761
BstMCI	CGRYCG	1 cut(s)	54
BstMWI	GCNNNNNNNGC	2 cut(s)	262, 292
BstNI	CCWGG	1 cut(s)	208
BstNSI	RCATGY	1 cut(s)	427
BstSCI	CCNGG	1 cut(s)	206
BstV2I	GAAGAC	1 cut(s)	567
BstX2I	RGATCY	5 cut(s)	194, 249, 361, 401, 460
BstYI	RGATCY	5 cut(s)	194, 249, 361, 401, 460
Bsu15I	ATCGAT	1 cut(s)	781
BsuRI	GGCC	3 cut(s)	211, 346, 680
BsuTUI	ATCGAT	1 cut(s)	781
BtsCI	GGATG	2 cut(s)	375, 584
BtsIMutI	CAGTG	1 cut(s)	347
Cac8I	GCNNGC	1 cut(s)	303
Cfr13I	GGNCC	2 cut(s)	344, 678
ClaI	ATCGAT	1 cut(s)	781
CseI	GACGC	1 cut(s)	144
CviAII	CATG	2 cut(s)	259, 424
DdeI	CTNAG	4 cut(s)	172, 350, 365, 589
EaeI	YGGCCR	1 cut(s)	209
Eam1104I	CTCTTC	1 cut(s)	139
EarI	CTCTTC	1 cut(s)	139
EciI	GGCGGA	1 cut(s)	406
Ecl136II	GAGCTC	1 cut(s)	219
Eco24I	GRGCYC	1 cut(s)	221
Eco31I	GGTCTC	1 cut(s)	114
Eco53kI	GAGCTC	1 cut(s)	219
Eco57I	CTGAAG	1 cut(s)	485
Eco88I	CYCGRG	1 cut(s)	694
EcoICRI	GAGCTC	1 cut(s)	219
EcoRII	CCWGG	1 cut(s)	206
EcoT38I	GRGCYC	1 cut(s)	221
FaeI	CATG	2 cut(s)	262, 427
FaiI	YATR	7 cut(s)	104, 116, 149, 226, 228, 260, 425
FaqI	GGGAC	1 cut(s)	389
FatI	CATG	2 cut(s)	258, 423
FauNDI	CATATG	1 cut(s)	226
Fnu4HI	GCNGC	1 cut(s)	153
FokI	GGATG	2 cut(s)	382, 571
FriOI	GRGCYC	1 cut(s)	221
Fsp4HI	GCNGC	1 cut(s)	153
FspBI	CTAG	1 cut(s)	278
GluI	GCNGC	1 cut(s)	153
HaeIII	GGCC	3 cut(s)	211, 346, 680
HapII	CCGG	2 cut(s)	54, 500
HgaI	GACGC	1 cut(s)	144
Hin1I	GRCGYC	1 cut(s)	155
Hin1II	CATG	2 cut(s)	262, 427
HincII	GTYRAC	1 cut(s)	310
HindII	GTYRAC	1 cut(s)	310
HinfI	GANTC	3 cut(s)	46, 70, 180
HpaII	CCGG	2 cut(s)	54, 500
HphI	GGTGA	3 cut(s)	117, 485, 521
Hpy166II	GTNNAC	1 cut(s)	310
Hpy188I	TCNGA	8 cut(s)	51, 90, 160, 366, 414, 465, 624, 766
Hpy188III	TCNNGA	3 cut(s)	238, 579, 694
Hpy8I	GTNNAC	1 cut(s)	310
Hpy99I	CGWCG	1 cut(s)	90
HpyAV	CCTTC	3 cut(s)	460, 567, 647
HpyCH4III	ACNGT	2 cut(s)	9, 788
HpyCH4V	TGCA	2 cut(s)	224, 301
HpyF10VI	GCNNNNNNNGC	2 cut(s)	262, 292
HpyF3I	CTNAG	4 cut(s)	172, 350, 365, 589
Hsp92I	GRCGYC	1 cut(s)	155
Hsp92II	CATG	2 cut(s)	262, 427
LmnI	GCTCC	2 cut(s)	22, 540
LpnPI	CCDG	9 cut(s)	23, 67, 193, 220, 266, 513, 579, 625, 661
MaeI	CTAG	1 cut(s)	278
MboII	GAAGA	9 cut(s)	126, 129, 329, 502, 505, 542, 567, 609, 724
MflI	RGATCY	5 cut(s)	194, 249, 361, 401, 460
MhlI	GDGCHC	1 cut(s)	221
MluCI	AATT	3 cut(s)	14, 671, 753
MmeI	TCCRAC	2 cut(s)	68, 74
MspA1I	CMGCKG	1 cut(s)	593
MspI	CCGG	2 cut(s)	54, 500
MspR9I	CCNGG	1 cut(s)	208
MvaI	CCWGG	1 cut(s)	208
MwoI	GCNNNNNNNGC	2 cut(s)	262, 292
NdeI	CATATG	1 cut(s)	226
NlaIII	CATG	2 cut(s)	262, 427
NlaIV	GGNNCC	1 cut(s)	11
NspI	RCATGY	1 cut(s)	427
PaeR7I	CTCGAG	1 cut(s)	694
PfeI	GAWTC	3 cut(s)	46, 70, 180
PkrI	GCNGC	1 cut(s)	154
Psp124BI	GAGCTC	1 cut(s)	221
Psp6I	CCWGG	1 cut(s)	206
PspGI	CCWGG	1 cut(s)	206
PspN4I	GGNNCC	1 cut(s)	11
PspPI	GGNCC	2 cut(s)	344, 678
PsuI	RGATCY	5 cut(s)	194, 249, 361, 401, 460
PvuII	CAGCTG	1 cut(s)	593
SacI	GAGCTC	1 cut(s)	221
SatI	GCNGC	1 cut(s)	153
Sau96I	GGNCC	2 cut(s)	344, 678
ScrFI	CCNGG	1 cut(s)	208
SduI	GDGCHC	1 cut(s)	221
Sfr274I	CTCGAG	1 cut(s)	694
SlaI	CTCGAG	1 cut(s)	694
SmlI	CTYRAG	1 cut(s)	694
SmoI	CTYRAG	1 cut(s)	694
Sse9I	AATT	3 cut(s)	14, 671, 753
SsiI	CCGC	2 cut(s)	152, 391
SspMI	CTAG	1 cut(s)	278
SstI	GAGCTC	1 cut(s)	221
StyD4I	CCNGG	1 cut(s)	206
TaaI	ACNGT	2 cut(s)	9, 788
TaqI	TCGA	9 cut(s)	18, 61, 165, 178, 188, 336, 605, 695, 781
TasI	AATT	3 cut(s)	14, 671, 753
TauI	GCSGC	1 cut(s)	155
TfiI	GAWTC	3 cut(s)	46, 70, 180
TscAI	CASTG	1 cut(s)	354
TspRI	CASTG	1 cut(s)	354
XapI	RAATTY	1 cut(s)	671
XceI	RCATGY	1 cut(s)	427
XhoI	CTCGAG	1 cut(s)	694
XspI	CTAG	1 cut(s)	278

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.