RchiOBHm_Chr1g0333511

Protein of unknown function (DUF1645)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0002353
Physical Location & Seq
Reverse (-)
25646007 .. 25646588
582 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ56231

Sequence Viewer

Length: 582 bp
ATGAGCTCGGCAGATGAGCTGTTCTTGAATAGAAAGATCCGGCCCATGAAGCTCTCCACCCACCTGGAAAAGCCCCAGGCGCCGTTGCAAGCTGTCAACGAGGAAGATGGAGATGATCTATTCGAGTTCGGGCCGCTGAGAGGCAGAGATCTGAGGATCAGGGACAAGTCCCTAAGGCGGAGAACGAGATCCATGTCTCCGATGAGAAACATGCCCTTTGGTAATTCATTCTGTTGCTTTGCGAAAGATCTGAAGGAGGATGATTTGGGGAAAAAGAAGAAGAAACCGGAGAATGGTGAGGAGGAGGAGGAGGAAGAAGTTGGGAGCTTGGAGACTACTCCTTCGGTTTCAGCTTCGTCTTCAAGATCATCCTCAGCTGGAAGAAACTCGAAAAGATGGGTCTTTCTGAAAGATTTTCTCCACAGGAGTAAAAGTGAAGGGAGGAGTAATAACAAATTCTGGGCCACAATCTCATTCTCGAGTAGTGGTAAGGAGAAGAAAATAGAGGTAAGTGTTGGGGGAGAAAGTAGGCAGAAAATTGGCTTGTCCGAGACAAGTGTTGATCGATGCGGTAGAAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1645

Protein Analysis

193

Amino Acids

21.85

Weight (kDa)

9.49

Isoelectric Point (pI)

69.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1645 PF07816 4 - 169 8.8e-28 Protein of unknown function (DUF1645)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 79
AciI CCGC 3 cut(s) 134, 178, 570
AclWI GGATC 3 cut(s) 31, 164, 183
AcsI RAATTY 1 cut(s) 455
AcuI CTGAAG 1 cut(s) 272
AcyI GRCGYC 1 cut(s) 80
AfiI CCNNNNNNNGG 3 cut(s) 140, 177, 293
AgsI TTSAA 2 cut(s) 28, 363
AjnI CCWGG 2 cut(s) 63, 75
AluBI AGCT 7 cut(s) 6, 19, 52, 92, 327, 353, 377
AluI AGCT 7 cut(s) 6, 19, 52, 92, 327, 353, 377
Alw21I GWGCWC 1 cut(s) 8
Alw26I GTCTC 3 cut(s) 201, 326, 545
AlwI GGATC 3 cut(s) 31, 164, 183
Ama87I CYCGRG 1 cut(s) 478
AoxI GGCC 3 cut(s) 41, 131, 462
ApoI RAATTY 1 cut(s) 455
ArsI GACNNNNNNTTYG 2 cut(s) 325, 357
AspLEI GCGC 1 cut(s) 82
AspS9I GGNCC 3 cut(s) 42, 131, 462
AsuHPI GGTGA 1 cut(s) 308
AvaI CYCGRG 1 cut(s) 478
AxyI CCTNAGG 1 cut(s) 173
BanI GGYRCC 1 cut(s) 79
BanII GRGCYC 1 cut(s) 8
BbsI GAAGAC 1 cut(s) 351
Bbv12I GWGCWC 1 cut(s) 8
BbvCI CCTCAGC 1 cut(s) 373
BccI CCATC 2 cut(s) 101, 390
BceAI ACGGC 1 cut(s) 67
BciT130I CCWGG 2 cut(s) 65, 77
BcoDI GTCTC 3 cut(s) 201, 326, 545
BfoI RGCGCY 1 cut(s) 83
BglII AGATCT 2 cut(s) 148, 247
BisI GCNGC 1 cut(s) 134
BlsI GCNGC 1 cut(s) 135
Bme1390I CCNGG 2 cut(s) 65, 77
BmeT110I CYCGRG 1 cut(s) 478
BmgT120I GGNCC 3 cut(s) 42, 131, 462
BmiI GGNNCC 1 cut(s) 81
BmrFI CCNGG 2 cut(s) 65, 77
BmsI GCATC 1 cut(s) 557
BpiI GAAGAC 1 cut(s) 351
Bpu10I CCTNAGC 1 cut(s) 373
Bsa29I ATCGAT 1 cut(s) 565
BsaHI GRCGYC 1 cut(s) 80
BsaJI CCNNGG 1 cut(s) 75
BsaWI WCCGGW 1 cut(s) 286
BsaXI ACNNNNNCTCC 2 cut(s) 418, 448
Bsc4I CCNNNNNNNGG 3 cut(s) 140, 177, 293
Bse21I CCTNAGG 1 cut(s) 173
BseBI CCWGG 2 cut(s) 65, 77
BseCI ATCGAT 1 cut(s) 565
BseDI CCNNGG 1 cut(s) 75
BseGI GGATG 2 cut(s) 265, 368
BseLI CCNNNNNNNGG 3 cut(s) 140, 177, 293
BseMII CTCAG 3 cut(s) 128, 143, 387
BseRI GAGGAG 5 cut(s) 314, 317, 320, 323, 457
BshFI GGCC 3 cut(s) 43, 133, 464
BshNI GGYRCC 1 cut(s) 79
BshVI ATCGAT 1 cut(s) 565
BsiHKAI GWGCWC 1 cut(s) 8
BsiHKCI CYCGRG 1 cut(s) 478
BsiSI CCGG 2 cut(s) 40, 287
BslFI GGGAC 2 cut(s) 154, 176
BslI CCNNNNNNNGG 3 cut(s) 140, 177, 293
BsmAI GTCTC 3 cut(s) 201, 326, 545
BsmFI GGGAC 2 cut(s) 154, 176
BsnI GGCC 3 cut(s) 43, 133, 464
BsoBI CYCGRG 1 cut(s) 478
Bsp1286I GDGCHC 1 cut(s) 8
Bsp143I GATC 8 cut(s) 36, 115, 148, 156, 188, 247, 365, 562
BspACI CCGC 3 cut(s) 134, 178, 570
BspANI GGCC 3 cut(s) 43, 133, 464
BspCNI CTCAG 3 cut(s) 129, 144, 386
BspDI ATCGAT 1 cut(s) 565
BspLI GGNNCC 1 cut(s) 81
BspPI GGATC 3 cut(s) 31, 164, 183
BspT107I GGYRCC 1 cut(s) 79
BssECI CCNNGG 1 cut(s) 75
BssMI GATC 8 cut(s) 36, 115, 148, 156, 188, 247, 365, 562
BssNI GRCGYC 1 cut(s) 80
Bst2UI CCWGG 2 cut(s) 65, 77
BstACI GRCGYC 1 cut(s) 80
BstC8I GCNNGC 1 cut(s) 90
BstDEI CTNAG 4 cut(s) 137, 152, 173, 373
BstF5I GGATG 2 cut(s) 265, 368
BstH2I RGCGCY 1 cut(s) 83
BstHHI GCGC 1 cut(s) 82
BstKTI GATC 8 cut(s) 39, 118, 151, 159, 191, 250, 368, 565
BstMAI GTCTC 3 cut(s) 201, 326, 545
BstMBI GATC 8 cut(s) 36, 115, 148, 156, 188, 247, 365, 562
BstMWI GCNNNNNNNGC 2 cut(s) 49, 79
BstNI CCWGG 2 cut(s) 65, 77
BstNSI RCATGY 1 cut(s) 214
BstSCI CCNGG 2 cut(s) 63, 75
BstV2I GAAGAC 1 cut(s) 351
BstX2I RGATCY 4 cut(s) 36, 148, 188, 247
BstXI CCANNNNNNTGG 1 cut(s) 64
BstYI RGATCY 4 cut(s) 36, 148, 188, 247
Bsu15I ATCGAT 1 cut(s) 565
Bsu36I CCTNAGG 1 cut(s) 173
BsuRI GGCC 3 cut(s) 43, 133, 464
BsuTUI ATCGAT 1 cut(s) 565
BtsCI GGATG 2 cut(s) 265, 368
Cac8I GCNNGC 1 cut(s) 90
CfoI GCGC 1 cut(s) 82
Cfr13I GGNCC 3 cut(s) 42, 131, 462
ClaI ATCGAT 1 cut(s) 565
CviAII CATG 3 cut(s) 46, 193, 211
DdeI CTNAG 4 cut(s) 137, 152, 173, 373
DinI GGCGCC 1 cut(s) 81
DpnI GATC 8 cut(s) 38, 117, 150, 158, 190, 249, 367, 564
DpnII GATC 8 cut(s) 36, 115, 148, 156, 188, 247, 365, 562
EciI GGCGGA 1 cut(s) 193
Ecl136II GAGCTC 1 cut(s) 6
Eco24I GRGCYC 1 cut(s) 8
Eco53kI GAGCTC 1 cut(s) 6
Eco57I CTGAAG 1 cut(s) 272
Eco81I CCTNAGG 1 cut(s) 173
Eco88I CYCGRG 1 cut(s) 478
EcoICRI GAGCTC 1 cut(s) 6
EcoRII CCWGG 2 cut(s) 63, 75
EcoT38I GRGCYC 1 cut(s) 8
EgeI GGCGCC 1 cut(s) 81
EheI GGCGCC 1 cut(s) 81
FaeI CATG 3 cut(s) 49, 196, 214
FaiI YATR 3 cut(s) 47, 194, 212
FaqI GGGAC 2 cut(s) 154, 176
FatI CATG 3 cut(s) 45, 192, 210
Fnu4HI GCNGC 1 cut(s) 134
FokI GGATG 2 cut(s) 272, 355
FriOI GRGCYC 1 cut(s) 8
Fsp4HI GCNGC 1 cut(s) 134
GlaI GCGC 1 cut(s) 81
GluI GCNGC 1 cut(s) 134
HaeII RGCGCY 1 cut(s) 83
HaeIII GGCC 3 cut(s) 43, 133, 464
HapII CCGG 2 cut(s) 40, 287
HhaI GCGC 1 cut(s) 82
Hin1I GRCGYC 1 cut(s) 80
Hin1II CATG 3 cut(s) 49, 196, 214
Hin6I GCGC 1 cut(s) 80
HinP1I GCGC 1 cut(s) 80
HincII GTYRAC 1 cut(s) 97
HindII GTYRAC 1 cut(s) 97
HpaII CCGG 2 cut(s) 40, 287
HphI GGTGA 1 cut(s) 308
Hpy166II GTNNAC 1 cut(s) 97
Hpy188I TCNGA 5 cut(s) 153, 201, 252, 408, 550
Hpy188III TCNNGA 3 cut(s) 25, 363, 478
Hpy8I GTNNAC 1 cut(s) 97
HpyAV CCTTC 3 cut(s) 247, 351, 431
HpyCH4V TGCA 1 cut(s) 88
HpyF10VI GCNNNNNNNGC 2 cut(s) 49, 79
HpyF3I CTNAG 4 cut(s) 137, 152, 173, 373
Hsp92I GRCGYC 1 cut(s) 80
Hsp92II CATG 3 cut(s) 49, 196, 214
HspAI GCGC 1 cut(s) 80
KasI GGCGCC 1 cut(s) 79
Kzo9I GATC 8 cut(s) 36, 115, 148, 156, 188, 247, 365, 562
LmnI GCTCC 1 cut(s) 324
LweI GCATC 1 cut(s) 557
MalI GATC 8 cut(s) 38, 117, 150, 158, 190, 249, 367, 564
MboI GATC 8 cut(s) 36, 115, 148, 156, 188, 247, 365, 562
MboII GAAGA 7 cut(s) 116, 289, 292, 326, 351, 393, 508
MflI RGATCY 4 cut(s) 36, 148, 188, 247
MhlI GDGCHC 1 cut(s) 8
MluCI AATT 3 cut(s) 223, 455, 537
Mly113I GGCGCC 1 cut(s) 80
MspA1I CMGCKG 2 cut(s) 136, 377
MspI CCGG 2 cut(s) 40, 287
MspR9I CCNGG 2 cut(s) 65, 77
MvaI CCWGG 2 cut(s) 65, 77
MwoI GCNNNNNNNGC 2 cut(s) 49, 79
NarI GGCGCC 1 cut(s) 80
NdeII GATC 8 cut(s) 36, 115, 148, 156, 188, 247, 365, 562
NlaIII CATG 3 cut(s) 49, 196, 214
NlaIV GGNNCC 1 cut(s) 81
NspI RCATGY 1 cut(s) 214
PaeR7I CTCGAG 1 cut(s) 478
PkrI GCNGC 1 cut(s) 135
PluTI GGCGCC 1 cut(s) 83
Psp124BI GAGCTC 1 cut(s) 8
Psp6I CCWGG 2 cut(s) 63, 75
PspGI CCWGG 2 cut(s) 63, 75
PspN4I GGNNCC 1 cut(s) 81
PspPI GGNCC 3 cut(s) 42, 131, 462
PsuI RGATCY 4 cut(s) 36, 148, 188, 247
PvuII CAGCTG 1 cut(s) 377
SacI GAGCTC 1 cut(s) 8
SatI GCNGC 1 cut(s) 134
Sau3AI GATC 8 cut(s) 36, 115, 148, 156, 188, 247, 365, 562
Sau96I GGNCC 3 cut(s) 42, 131, 462
ScrFI CCNGG 2 cut(s) 65, 77
SduI GDGCHC 1 cut(s) 8
SetI ASST 9 cut(s) 8, 21, 54, 66, 94, 329, 355, 379, 510
SfaNI GCATC 1 cut(s) 557
SfoI GGCGCC 1 cut(s) 81
Sfr274I CTCGAG 1 cut(s) 478
SlaI CTCGAG 1 cut(s) 478
SmlI CTYRAG 1 cut(s) 478
SmoI CTYRAG 1 cut(s) 478
Sse9I AATT 3 cut(s) 223, 455, 537
SsiI CCGC 3 cut(s) 134, 178, 570
SspDI GGCGCC 1 cut(s) 79
SstI GAGCTC 1 cut(s) 8
StyD4I CCNGG 2 cut(s) 63, 75
TaqI TCGA 4 cut(s) 123, 389, 479, 565
TasI AATT 3 cut(s) 223, 455, 537
TauI GCSGC 1 cut(s) 136
TspDTI ATGAA 2 cut(s) 62, 216
XapI RAATTY 1 cut(s) 455
XceI RCATGY 1 cut(s) 214
XhoI CTCGAG 1 cut(s) 478
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.