RchiOBHm_Chr5g0038721

Protein of unknown function (DUF1645)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0002353
Physical Location & Seq
Reverse (-)
33483030 .. 33483554
525 bp
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UTR
Exon/CDS
Intron
PRQ31732

Sequence Viewer

Length: 525 bp
ATGAGCTCGGCAGATGAGCTGTTCTTGAATGGAAAGATCTGGCCCATGAAGCTCTCCACCCACCTGGAAAAGCCCCAGGCACCGTTGCAAGCTGTCAACGAGGAAGATGGAGATGATCTATTCGAGTTCGGGCCGTTGAGAGGCAGAGATATGAGGATGAGGGACAAGTCTCTGCGGCGGAGAACGAGATCCATGTCTCCGATGAGAAACATGCCTTTTGGTAATAATGACTGTTGCTTTGCGAAAGATCTGAAGGAGGGTGATTTGGGGAAGAAGAAGAAGAAATCGGAGAATGGTGAGGAGGAAGAAGTTGGGAGCTTGGAGACTACTCCTTCGGTTACGGCTTCGTCTTCAAGATCATCCTCACCTGGAAGAAACTCGAAAAGATGGGTCTTTCTGAAAGATTTTCTCCACAGGAGTAAAAGTGAAAGGAGGAGTAACAACAAATTCTGGGCCACAATCTCATTCTCAAGTAGTGGTAAGGAGAAGCAAATAGAGGCAAGTGTTGGGGGAGAAAATAGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1645

Protein Analysis

174

Amino Acids

19.74

Weight (kDa)

9.54

Isoelectric Point (pI)

69.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1645 PF07816 4 - 162 7.8e-26 Protein of unknown function (DUF1645)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 79
AciI CCGC 2 cut(s) 175, 178
AclWI GGATC 1 cut(s) 183
AcsI RAATTY 1 cut(s) 446
AcuI CTGAAG 1 cut(s) 272
AfiI CCNNNNNNNGG 1 cut(s) 140
AgsI TTSAA 2 cut(s) 28, 354
AjnI CCWGG 3 cut(s) 63, 75, 367
AluBI AGCT 5 cut(s) 6, 19, 52, 92, 318
AluI AGCT 5 cut(s) 6, 19, 52, 92, 318
Alw21I GWGCWC 1 cut(s) 8
Alw26I GTCTC 3 cut(s) 174, 201, 317
AlwI GGATC 1 cut(s) 183
AoxI GGCC 3 cut(s) 41, 131, 453
ApoI RAATTY 1 cut(s) 446
ArsI GACNNNNNNTTYG 4 cut(s) 221, 253, 316, 348
AspS9I GGNCC 3 cut(s) 42, 131, 453
AsuHPI GGTGA 3 cut(s) 272, 308, 357
BanI GGYRCC 1 cut(s) 79
BanII GRGCYC 1 cut(s) 8
BbsI GAAGAC 1 cut(s) 342
Bbv12I GWGCWC 1 cut(s) 8
BccI CCATC 2 cut(s) 101, 381
BceAI ACGGC 2 cut(s) 118, 357
BciT130I CCWGG 3 cut(s) 65, 77, 369
BcoDI GTCTC 3 cut(s) 174, 201, 317
BglII AGATCT 2 cut(s) 36, 247
BisI GCNGC 1 cut(s) 176
BlsI GCNGC 1 cut(s) 177
Bme1390I CCNGG 3 cut(s) 65, 77, 369
BmgT120I GGNCC 3 cut(s) 42, 131, 453
BmiI GGNNCC 1 cut(s) 81
BmrFI CCNGG 3 cut(s) 65, 77, 369
BpiI GAAGAC 1 cut(s) 342
BpuEI CTTGAG 1 cut(s) 454
BsaJI CCNNGG 1 cut(s) 75
BsaXI ACNNNNNCTCC 2 cut(s) 409, 439
Bsc4I CCNNNNNNNGG 1 cut(s) 140
BseBI CCWGG 3 cut(s) 65, 77, 369
BseDI CCNNGG 1 cut(s) 75
BseGI GGATG 2 cut(s) 162, 359
BseLI CCNNNNNNNGG 1 cut(s) 140
BseRI GAGGAG 2 cut(s) 314, 448
BshFI GGCC 3 cut(s) 43, 133, 455
BshNI GGYRCC 1 cut(s) 79
BsiHKAI GWGCWC 1 cut(s) 8
BslFI GGGAC 1 cut(s) 176
BslI CCNNNNNNNGG 1 cut(s) 140
BsmAI GTCTC 3 cut(s) 174, 201, 317
BsmFI GGGAC 1 cut(s) 176
BsnI GGCC 3 cut(s) 43, 133, 455
Bsp1286I GDGCHC 1 cut(s) 8
Bsp143I GATC 5 cut(s) 36, 115, 188, 247, 356
BspACI CCGC 2 cut(s) 175, 178
BspANI GGCC 3 cut(s) 43, 133, 455
BspLI GGNNCC 1 cut(s) 81
BspPI GGATC 1 cut(s) 183
BspT107I GGYRCC 1 cut(s) 79
BssECI CCNNGG 1 cut(s) 75
BssMI GATC 5 cut(s) 36, 115, 188, 247, 356
Bst2UI CCWGG 3 cut(s) 65, 77, 369
Bst4CI ACNGT 2 cut(s) 84, 233
BstC8I GCNNGC 1 cut(s) 90
BstF5I GGATG 2 cut(s) 162, 359
BstKTI GATC 5 cut(s) 39, 118, 191, 250, 359
BstMAI GTCTC 3 cut(s) 174, 201, 317
BstMBI GATC 5 cut(s) 36, 115, 188, 247, 356
BstMWI GCNNNNNNNGC 1 cut(s) 49
BstNI CCWGG 3 cut(s) 65, 77, 369
BstNSI RCATGY 1 cut(s) 214
BstSCI CCNGG 3 cut(s) 63, 75, 367
BstV2I GAAGAC 1 cut(s) 342
BstX2I RGATCY 3 cut(s) 36, 188, 247
BstXI CCANNNNNNTGG 1 cut(s) 64
BstYI RGATCY 3 cut(s) 36, 188, 247
BsuRI GGCC 3 cut(s) 43, 133, 455
BtsCI GGATG 2 cut(s) 162, 359
Cac8I GCNNGC 1 cut(s) 90
Cfr13I GGNCC 3 cut(s) 42, 131, 453
CviAII CATG 3 cut(s) 46, 193, 211
DpnI GATC 5 cut(s) 38, 117, 190, 249, 358
DpnII GATC 5 cut(s) 36, 115, 188, 247, 356
EciI GGCGGA 1 cut(s) 193
Ecl136II GAGCTC 1 cut(s) 6
Eco24I GRGCYC 1 cut(s) 8
Eco53kI GAGCTC 1 cut(s) 6
Eco57I CTGAAG 1 cut(s) 272
EcoICRI GAGCTC 1 cut(s) 6
EcoRII CCWGG 3 cut(s) 63, 75, 367
EcoT38I GRGCYC 1 cut(s) 8
FaeI CATG 3 cut(s) 49, 196, 214
FaiI YATR 4 cut(s) 47, 152, 194, 212
FaqI GGGAC 1 cut(s) 176
FatI CATG 3 cut(s) 45, 192, 210
Fnu4HI GCNGC 1 cut(s) 176
FokI GGATG 2 cut(s) 169, 346
FriOI GRGCYC 1 cut(s) 8
Fsp4HI GCNGC 1 cut(s) 176
GluI GCNGC 1 cut(s) 176
HaeIII GGCC 3 cut(s) 43, 133, 455
Hin1II CATG 3 cut(s) 49, 196, 214
HincII GTYRAC 1 cut(s) 97
HindII GTYRAC 1 cut(s) 97
HphI GGTGA 3 cut(s) 272, 308, 357
Hpy166II GTNNAC 1 cut(s) 97
Hpy188I TCNGA 4 cut(s) 201, 252, 289, 399
Hpy188III TCNNGA 2 cut(s) 25, 354
Hpy8I GTNNAC 1 cut(s) 97
HpyAV CCTTC 2 cut(s) 247, 342
HpyCH4III ACNGT 2 cut(s) 84, 233
HpyCH4V TGCA 1 cut(s) 88
HpyF10VI GCNNNNNNNGC 1 cut(s) 49
Hsp92II CATG 3 cut(s) 49, 196, 214
Kzo9I GATC 5 cut(s) 36, 115, 188, 247, 356
LmnI GCTCC 1 cut(s) 315
LpnPI CCDG 9 cut(s) 25, 50, 62, 77, 89, 354, 381, 400, 436
MaeIII GTNAC 2 cut(s) 337, 437
MalI GATC 5 cut(s) 38, 117, 190, 249, 358
MboI GATC 5 cut(s) 36, 115, 188, 247, 356
MboII GAAGA 8 cut(s) 116, 283, 286, 289, 292, 317, 342, 384
MflI RGATCY 3 cut(s) 36, 188, 247
MhlI GDGCHC 1 cut(s) 8
MluCI AATT 1 cut(s) 446
MspR9I CCNGG 3 cut(s) 65, 77, 369
MvaI CCWGG 3 cut(s) 65, 77, 369
MwoI GCNNNNNNNGC 1 cut(s) 49
NdeII GATC 5 cut(s) 36, 115, 188, 247, 356
NlaIII CATG 3 cut(s) 49, 196, 214
NlaIV GGNNCC 1 cut(s) 81
NspI RCATGY 1 cut(s) 214
PkrI GCNGC 1 cut(s) 177
Psp124BI GAGCTC 1 cut(s) 8
Psp6I CCWGG 3 cut(s) 63, 75, 367
PspGI CCWGG 3 cut(s) 63, 75, 367
PspN4I GGNNCC 1 cut(s) 81
PspPI GGNCC 3 cut(s) 42, 131, 453
PsuI RGATCY 3 cut(s) 36, 188, 247
SacI GAGCTC 1 cut(s) 8
SatI GCNGC 1 cut(s) 176
Sau3AI GATC 5 cut(s) 36, 115, 188, 247, 356
Sau96I GGNCC 3 cut(s) 42, 131, 453
ScrFI CCNGG 3 cut(s) 65, 77, 369
SduI GDGCHC 1 cut(s) 8
SetI ASST 8 cut(s) 8, 21, 54, 66, 94, 320, 370, 524
SmlI CTYRAG 1 cut(s) 469
SmoI CTYRAG 1 cut(s) 469
Sse9I AATT 1 cut(s) 446
SsiI CCGC 2 cut(s) 175, 178
SstI GAGCTC 1 cut(s) 8
StyD4I CCNGG 3 cut(s) 63, 75, 367
TaaI ACNGT 2 cut(s) 84, 233
TaqI TCGA 2 cut(s) 123, 380
TasI AATT 1 cut(s) 446
TauI GCSGC 1 cut(s) 178
TspDTI ATGAA 1 cut(s) 62
XapI RAATTY 1 cut(s) 446
XceI RCATGY 1 cut(s) 214
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.