Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0020548.1

Orthogroup ID

OG0002353

Physical Location & Seq

Genomic Coordinates Reverse (-)

24761 .. 26240

Gene Structure 1480 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0020548.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 384 bp

atgcccagcgcagctgcgcagcagttgaggggcgtcttcagacaacagtgccagtttgcaaccgttgagcttgtggactttctggtggagattccgaccggagatcgaacatggaatccccttgttgctcgtcggacatcatctcgtataaggtctcgtataagatcatcacccaactcttcttcgtttgatacggcggcgtcggatttcgagttctcagctcgattcgggtcgaatggatctattgctacctggccgatgagctctgcagatgagctattcttgaatggaaagatccaacccatgaggctctccacccacctggaaaagccccaggcgccgttgcaagctgtcaacgaggaagatggagatgatctattctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1645

Protein Analysis

127

Amino Acids

14.11

Weight (kDa)

5.34

Isoelectric Point (pI)

47.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002353)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G62630
fragaria_vesca	FvH4_6g07220 FvH4_6g07220 FvH4_6g07220
malus_domestica	MD04G1195400.v1.1 MD12G1207500.v1.1
prunus_persica	Prupe.6G315100_v2.0.a1
pyrus_communis	pycom04g17260 pycom12g19510 pycom15g32780
rosa_chinensis	RchiOBHm_Chr1g0333511 RchiOBHm_Chr1g0352421 RchiOBHm_Chr2g0129671 RchiOBHm_Chr3g0456851 RchiOBHm_Chr5g0038721 RchiOBHm_Chr6g0249361
rosa_laevigata	RLG00000023272 RLG00000025274
rosa_multiflora	Rmu_co8019462.1_g000001 Rmu_sc0000133.1_g000019 Rmu_sc0000741.1_g000014 Rmu_sc0001016.1_g000061 Rmu_sc0001890.1_g000010 Rmu_sc0002095.1_g000008 Rmu_sc0002955.1_g000021 Rmu_sc0005500.1_g000015 Rmu_sc0010617.1_g000006 Rmu_sc0020548.1_g000004 Rmu_sc0020548.1_g000005 Rmu_sc0033338.1_g000001
rosa_roxburghii	Rroxscaffold_3G00223580 Rroxscaffold_6G00422440
rosa_rugosa	Rorug03G0016400
rosa_samantha	Rh1AG132800 Rh1AG157400 Rh1CG147200 Rh3AG076700 Rh3BG078500 Rh3CG078300 Rh3DG080300 Rh4DG243900
rosa_wichuraiana	Rw3G006580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	18
AccB1I	GGYRCC	1 cut(s)	337
AciI	CCGC	1 cut(s)	197
AclWI	GGATC	2 cut(s)	247, 289
AcoI	YGGCCR	1 cut(s)	254
AcuI	CTGAAG	1 cut(s)	22
AcyI	GRCGYC	3 cut(s)	33, 200, 338
AgsI	TTSAA	1 cut(s)	286
AjnI	CCWGG	3 cut(s)	251, 321, 333
AloI	GAACNNNNNNTCC	4 cut(s)	100, 132, 197, 229
AluBI	AGCT	6 cut(s)	14, 70, 221, 264, 277, 350
AluI	AGCT	6 cut(s)	14, 70, 221, 264, 277, 350
Alw21I	GWGCWC	1 cut(s)	266
Alw26I	GTCTC	1 cut(s)	159
AlwI	GGATC	2 cut(s)	247, 289
AoxI	GGCC	1 cut(s)	254
ApeKI	GCWGC	3 cut(s)	11, 14, 19
AspLEI	GCGC	3 cut(s)	11, 19, 340
AsuHPI	GGTGA	1 cut(s)	162
BanI	GGYRCC	1 cut(s)	337
BanII	GRGCYC	1 cut(s)	266
BbsI	GAAGAC	1 cut(s)	28
Bbv12I	GWGCWC	1 cut(s)	266
BbvI	GCAGC	2 cut(s)	23, 31
BccI	CCATC	1 cut(s)	359
BceAI	ACGGC	2 cut(s)	210, 325
BciT130I	CCWGG	3 cut(s)	253, 323, 335
BcoDI	GTCTC	1 cut(s)	159
BfaI	CTAG	1 cut(s)	382
BfmI	CTRYAG	1 cut(s)	267
BfoI	RGCGCY	1 cut(s)	341
BisI	GCNGC	4 cut(s)	12, 15, 20, 198
BlsI	GCNGC	4 cut(s)	13, 16, 21, 199
Bme1390I	CCNGG	3 cut(s)	253, 323, 335
BmiI	GGNNCC	1 cut(s)	339
BmrFI	CCNGG	3 cut(s)	253, 323, 335
BpiI	GAAGAC	1 cut(s)	28
BsaHI	GRCGYC	3 cut(s)	33, 200, 338
BsaI	GGTCTC	1 cut(s)	159
BsaJI	CCNNGG	1 cut(s)	333
BsaWI	WCCGGW	1 cut(s)	98
Bse1I	ACTGG	1 cut(s)	52
BseBI	CCWGG	3 cut(s)	253, 323, 335
BseDI	CCNNGG	1 cut(s)	333
BseMII	CTCAG	1 cut(s)	231
BseNI	ACTGG	1 cut(s)	52
BseXI	GCAGC	2 cut(s)	23, 31
BseYI	CCCAGC	1 cut(s)	5
Bsh1285I	CGRYCG	1 cut(s)	99
BshFI	GGCC	1 cut(s)	256
BshNI	GGYRCC	1 cut(s)	337
BsiEI	CGRYCG	1 cut(s)	99
BsiHKAI	GWGCWC	1 cut(s)	266
BsiSI	CCGG	1 cut(s)	99
BsmAI	GTCTC	1 cut(s)	159
BsnI	GGCC	1 cut(s)	256
Bso31I	GGTCTC	1 cut(s)	159
Bsp1286I	GDGCHC	1 cut(s)	266
Bsp143I	GATC	5 cut(s)	103, 164, 239, 294, 373
BspACI	CCGC	1 cut(s)	197
BspANI	GGCC	1 cut(s)	256
BspCNI	CTCAG	1 cut(s)	230
BspLI	GGNNCC	1 cut(s)	339
BspMAI	CTGCAG	1 cut(s)	271
BspPI	GGATC	2 cut(s)	247, 289
BspT107I	GGYRCC	1 cut(s)	337
BspTNI	GGTCTC	1 cut(s)	159
BsrI	ACTGG	1 cut(s)	52
BssECI	CCNNGG	1 cut(s)	333
BssMI	GATC	5 cut(s)	103, 164, 239, 294, 373
BssNI	GRCGYC	3 cut(s)	33, 200, 338
Bst2UI	CCWGG	3 cut(s)	253, 323, 335
Bst4CI	ACNGT	2 cut(s)	48, 64
Bst6I	CTCTTC	1 cut(s)	184
BstACI	GRCGYC	3 cut(s)	33, 200, 338
BstC8I	GCNNGC	1 cut(s)	348
BstDEI	CTNAG	1 cut(s)	217
BstH2I	RGCGCY	1 cut(s)	341
BstHHI	GCGC	3 cut(s)	11, 19, 340
BstKTI	GATC	5 cut(s)	106, 167, 242, 297, 376
BstMAI	GTCTC	1 cut(s)	159
BstMBI	GATC	5 cut(s)	103, 164, 239, 294, 373
BstMCI	CGRYCG	1 cut(s)	99
BstMWI	GCNNNNNNNGC	1 cut(s)	337
BstNI	CCWGG	3 cut(s)	253, 323, 335
BstSCI	CCNGG	3 cut(s)	251, 321, 333
BstSFI	CTRYAG	1 cut(s)	267
BstV1I	GCAGC	2 cut(s)	23, 31
BstV2I	GAAGAC	1 cut(s)	28
BstX2I	RGATCY	2 cut(s)	239, 294
BstXI	CCANNNNNNTGG	1 cut(s)	322
BstYI	RGATCY	2 cut(s)	239, 294
BsuRI	GGCC	1 cut(s)	256
BtsIMutI	CAGTG	1 cut(s)	53
Cac8I	GCNNGC	1 cut(s)	348
CfoI	GCGC	3 cut(s)	11, 19, 340
CseI	GACGC	2 cut(s)	22, 189
CviAII	CATG	2 cut(s)	111, 304
CviJI	RGCY	9 cut(s)	14, 70, 221, 256, 264, 277, 310, 331, 350
CviKI_1	RGCY	9 cut(s)	14, 70, 221, 256, 264, 277, 310, 331, 350
DdeI	CTNAG	1 cut(s)	217
DinI	GGCGCC	1 cut(s)	339
DpnI	GATC	5 cut(s)	105, 166, 241, 296, 375
DpnII	GATC	5 cut(s)	103, 164, 239, 294, 373
EaeI	YGGCCR	1 cut(s)	254
Eam1104I	CTCTTC	1 cut(s)	184
EarI	CTCTTC	1 cut(s)	184
Ecl136II	GAGCTC	1 cut(s)	264
Eco24I	GRGCYC	1 cut(s)	266
Eco31I	GGTCTC	1 cut(s)	159
Eco53kI	GAGCTC	1 cut(s)	264
Eco57I	CTGAAG	1 cut(s)	22
EcoICRI	GAGCTC	1 cut(s)	264
EcoRII	CCWGG	3 cut(s)	251, 321, 333
EcoT38I	GRGCYC	1 cut(s)	266
EgeI	GGCGCC	1 cut(s)	339
EheI	GGCGCC	1 cut(s)	339
FaeI	CATG	2 cut(s)	114, 307
FaiI	YATR	4 cut(s)	112, 149, 161, 305
FatI	CATG	2 cut(s)	110, 303
Fnu4HI	GCNGC	4 cut(s)	12, 15, 20, 198
FriOI	GRGCYC	1 cut(s)	266
Fsp4HI	GCNGC	4 cut(s)	12, 15, 20, 198
FspBI	CTAG	1 cut(s)	382
FspI	TGCGCA	1 cut(s)	18
GlaI	GCGC	3 cut(s)	10, 18, 339
GluI	GCNGC	4 cut(s)	12, 15, 20, 198
GsaI	CCCAGC	1 cut(s)	9
HaeII	RGCGCY	1 cut(s)	341
HaeIII	GGCC	1 cut(s)	256
HapII	CCGG	1 cut(s)	99
HgaI	GACGC	2 cut(s)	22, 189
HhaI	GCGC	3 cut(s)	11, 19, 340
Hin1I	GRCGYC	3 cut(s)	33, 200, 338
Hin1II	CATG	2 cut(s)	114, 307
Hin6I	GCGC	3 cut(s)	9, 17, 338
HinP1I	GCGC	3 cut(s)	9, 17, 338
HincII	GTYRAC	1 cut(s)	355
HindII	GTYRAC	1 cut(s)	355
HinfI	GANTC	3 cut(s)	91, 115, 225
HpaII	CCGG	1 cut(s)	99
HphI	GGTGA	1 cut(s)	162
Hpy166II	GTNNAC	2 cut(s)	76, 355
Hpy188I	TCNGA	4 cut(s)	41, 96, 135, 205
Hpy188III	TCNNGA	1 cut(s)	283
Hpy8I	GTNNAC	2 cut(s)	76, 355
Hpy99I	CGWCG	2 cut(s)	135, 205
HpyCH4III	ACNGT	2 cut(s)	48, 64
HpyCH4V	TGCA	3 cut(s)	59, 269, 346
HpyF10VI	GCNNNNNNNGC	1 cut(s)	337
HpyF3I	CTNAG	1 cut(s)	217
Hsp92I	GRCGYC	3 cut(s)	33, 200, 338
Hsp92II	CATG	2 cut(s)	114, 307
HspAI	GCGC	3 cut(s)	9, 17, 338
KasI	GGCGCC	1 cut(s)	337
Kzo9I	GATC	5 cut(s)	103, 164, 239, 294, 373
Lsp1109I	GCAGC	2 cut(s)	23, 31
MaeI	CTAG	1 cut(s)	382
MalI	GATC	5 cut(s)	105, 166, 241, 296, 375
MboI	GATC	5 cut(s)	103, 164, 239, 294, 373
MboII	GAAGA	4 cut(s)	28, 171, 174, 374
MflI	RGATCY	2 cut(s)	239, 294
MhlI	GDGCHC	1 cut(s)	266
Mly113I	GGCGCC	1 cut(s)	338
MmeI	TCCRAC	4 cut(s)	113, 119, 183, 322
MnlI	CCTC	3 cut(s)	21, 300, 352
MspA1I	CMGCKG	1 cut(s)	14
MspI	CCGG	1 cut(s)	99
MspR9I	CCNGG	3 cut(s)	253, 323, 335
MvaI	CCWGG	3 cut(s)	253, 323, 335
MwoI	GCNNNNNNNGC	1 cut(s)	337
NarI	GGCGCC	1 cut(s)	338
NdeII	GATC	5 cut(s)	103, 164, 239, 294, 373
NlaIII	CATG	2 cut(s)	114, 307
NlaIV	GGNNCC	1 cut(s)	339
NsbI	TGCGCA	1 cut(s)	18
PfeI	GAWTC	3 cut(s)	91, 115, 225
PkrI	GCNGC	4 cut(s)	13, 16, 21, 199
PluTI	GGCGCC	1 cut(s)	341
Psp124BI	GAGCTC	1 cut(s)	266
Psp6I	CCWGG	3 cut(s)	251, 321, 333
PspFI	CCCAGC	1 cut(s)	5
PspGI	CCWGG	3 cut(s)	251, 321, 333
PspN4I	GGNNCC	1 cut(s)	339
PstI	CTGCAG	1 cut(s)	271
PsuI	RGATCY	2 cut(s)	239, 294
PvuII	CAGCTG	1 cut(s)	14
SacI	GAGCTC	1 cut(s)	266
SatI	GCNGC	4 cut(s)	12, 15, 20, 198
Sau3AI	GATC	5 cut(s)	103, 164, 239, 294, 373
ScrFI	CCNGG	3 cut(s)	253, 323, 335
SduI	GDGCHC	1 cut(s)	266
SetI	ASST	9 cut(s)	16, 72, 155, 223, 254, 266, 279, 324, 352
SfcI	CTRYAG	1 cut(s)	267
SfoI	GGCGCC	1 cut(s)	339
SsiI	CCGC	1 cut(s)	197
SspDI	GGCGCC	1 cut(s)	337
SspMI	CTAG	1 cut(s)	382
SstI	GAGCTC	1 cut(s)	266
StyD4I	CCNGG	3 cut(s)	251, 321, 333
TaaI	ACNGT	2 cut(s)	48, 64
TaqI	TCGA	4 cut(s)	106, 210, 223, 233
TauI	GCSGC	1 cut(s)	200
TfiI	GAWTC	3 cut(s)	91, 115, 225
TscAI	CASTG	1 cut(s)	53
TseI	GCWGC	3 cut(s)	11, 14, 19
TspRI	CASTG	1 cut(s)	53
XspI	CTAG	1 cut(s)	382

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.