Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0002353

Physical Location & Seq

Genomic Coordinates Reverse (-)

45549345 .. 45550188

Gene Structure 844 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG243900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

ATGAGCTCTGCAGATGAGCTGTTCTTGAATGGAAAGATCCGGCCCATGAAGCTCTCAACCCACCTGGAAAAGCCCCAGGCGCCGTTGCAAGCTGTCAATGAGGAAGGTGGAGATGATCTATTTGAGTTCGGGCCGCTGAGAGGCAGAGATCTGAGGATGAGGGACAAGTCTCTGCGGCGGAGAACCAGATCCAAGTCTCCGATGAGAAACATGCCCATTGGTAATAATGACTGTTGCTTTGCGAAAGATCTGAAGGAGGGTGATTTGGGGAAAAAGAAGAAGATATCGGAGAATAGTGAGGAGGAGGAGGAGGAAGAAGTTGGGAGCTTGGAGACTACTCCTTTGGTTTCAACTTCATCTTCAAGATCATCCTCAGTTGGAAGAAACTCGAAAAGATGGGTCTTTCTGAAAGATTTTCTCCACAGGAGTAAAAGTGAAGGAAGGAGTAATAACAAATTCTGGGCCACAATCTCATTCTCGAGTAGTGGTAAGGAGAAGAAAATAGAGAGGCAGGAATTGTGTCGAAGTGCAGTTGAGTATGAGGGGGTCGCGAATAAGTTGGAGAAAGCAAGTTTAGGGTTTCAACGATTGAAGAAATTTTGGGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1645

Protein Analysis

202

Amino Acids

23.0

Weight (kDa)

9.51

Isoelectric Point (pI)

62.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF1645	PF07816	4 - 169	8.3e-28	Protein of unknown function (DUF1645)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002353)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G62630
fragaria_vesca	FvH4_6g07220 FvH4_6g07220 FvH4_6g07220
malus_domestica	MD04G1195400.v1.1 MD12G1207500.v1.1
prunus_persica	Prupe.6G315100_v2.0.a1
pyrus_communis	pycom04g17260 pycom12g19510 pycom15g32780
rosa_chinensis	RchiOBHm_Chr1g0333511 RchiOBHm_Chr1g0352421 RchiOBHm_Chr2g0129671 RchiOBHm_Chr3g0456851 RchiOBHm_Chr5g0038721 RchiOBHm_Chr6g0249361
rosa_laevigata	RLG00000023272 RLG00000025274
rosa_multiflora	Rmu_co8019462.1_g000001 Rmu_sc0000133.1_g000019 Rmu_sc0000741.1_g000014 Rmu_sc0001016.1_g000061 Rmu_sc0001890.1_g000010 Rmu_sc0002095.1_g000008 Rmu_sc0002955.1_g000021 Rmu_sc0005500.1_g000015 Rmu_sc0010617.1_g000006 Rmu_sc0020548.1_g000004 Rmu_sc0020548.1_g000005 Rmu_sc0033338.1_g000001
rosa_roxburghii	Rroxscaffold_3G00223580 Rroxscaffold_6G00422440
rosa_rugosa	Rorug03G0016400
rosa_samantha	Rh1AG132800 Rh1AG157400 Rh1CG147200 Rh3AG076700 Rh3BG078500 Rh3CG078300 Rh3DG080300 Rh4DG243900
rosa_wichuraiana	Rw3G006580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	79
AccII	CGCG	1 cut(s)	551
AciI	CCGC	3 cut(s)	134, 175, 178
AclWI	GGATC	2 cut(s)	31, 183
AcsI	RAATTY	2 cut(s)	455, 596
AcuI	CTGAAG	1 cut(s)	272
AcyI	GRCGYC	1 cut(s)	80
AfiI	CCNNNNNNNGG	1 cut(s)	140
AgsI	TTSAA	5 cut(s)	28, 351, 363, 584, 592
AjnI	CCWGG	2 cut(s)	63, 75
AluBI	AGCT	5 cut(s)	6, 19, 52, 92, 327
AluI	AGCT	5 cut(s)	6, 19, 52, 92, 327
Alw21I	GWGCWC	1 cut(s)	8
Alw26I	GTCTC	3 cut(s)	174, 201, 326
AlwI	GGATC	2 cut(s)	31, 183
Ama87I	CYCGRG	1 cut(s)	478
AoxI	GGCC	3 cut(s)	41, 131, 462
ApoI	RAATTY	2 cut(s)	455, 596
ArsI	GACNNNNNNTTYG	4 cut(s)	221, 253, 325, 357
AspLEI	GCGC	1 cut(s)	82
AspS9I	GGNCC	3 cut(s)	42, 131, 462
AsuHPI	GGTGA	1 cut(s)	272
AvaI	CYCGRG	1 cut(s)	478
BanI	GGYRCC	1 cut(s)	79
BanII	GRGCYC	1 cut(s)	8
Bbv12I	GWGCWC	1 cut(s)	8
BccI	CCATC	1 cut(s)	390
BceAI	ACGGC	1 cut(s)	67
BciT130I	CCWGG	2 cut(s)	65, 77
BcoDI	GTCTC	3 cut(s)	174, 201, 326
BfmI	CTRYAG	1 cut(s)	9
BfoI	RGCGCY	1 cut(s)	83
BglII	AGATCT	2 cut(s)	148, 247
BisI	GCNGC	2 cut(s)	134, 176
BlsI	GCNGC	2 cut(s)	135, 177
Bme1390I	CCNGG	2 cut(s)	65, 77
BmeT110I	CYCGRG	1 cut(s)	478
BmgT120I	GGNCC	3 cut(s)	42, 131, 462
BmiI	GGNNCC	1 cut(s)	81
BmrFI	CCNGG	2 cut(s)	65, 77
BsaHI	GRCGYC	1 cut(s)	80
BsaJI	CCNNGG	1 cut(s)	75
BsaXI	ACNNNNNCTCC	2 cut(s)	418, 448
Bsc4I	CCNNNNNNNGG	1 cut(s)	140
BseBI	CCWGG	2 cut(s)	65, 77
BseDI	CCNNGG	1 cut(s)	75
BseGI	GGATG	2 cut(s)	162, 368
BseLI	CCNNNNNNNGG	1 cut(s)	140
BseMII	CTCAG	3 cut(s)	128, 143, 387
BseRI	GAGGAG	4 cut(s)	314, 317, 320, 323
BsgI	GTGCAG	1 cut(s)	549
Bsh1236I	CGCG	1 cut(s)	551
BshFI	GGCC	3 cut(s)	43, 133, 464
BshNI	GGYRCC	1 cut(s)	79
BsiHKAI	GWGCWC	1 cut(s)	8
BsiHKCI	CYCGRG	1 cut(s)	478
BsiSI	CCGG	1 cut(s)	40
BslFI	GGGAC	1 cut(s)	176
BslI	CCNNNNNNNGG	1 cut(s)	140
BsmAI	GTCTC	3 cut(s)	174, 201, 326
BsmFI	GGGAC	1 cut(s)	176
BsnI	GGCC	3 cut(s)	43, 133, 464
BsoBI	CYCGRG	1 cut(s)	478
Bsp1286I	GDGCHC	1 cut(s)	8
Bsp143I	GATC	6 cut(s)	36, 115, 148, 188, 247, 365
Bsp68I	TCGCGA	1 cut(s)	551
BspACI	CCGC	3 cut(s)	134, 175, 178
BspANI	GGCC	3 cut(s)	43, 133, 464
BspCNI	CTCAG	3 cut(s)	129, 144, 386
BspFNI	CGCG	1 cut(s)	551
BspLI	GGNNCC	1 cut(s)	81
BspMAI	CTGCAG	1 cut(s)	13
BspPI	GGATC	2 cut(s)	31, 183
BspT107I	GGYRCC	1 cut(s)	79
BssECI	CCNNGG	1 cut(s)	75
BssMI	GATC	6 cut(s)	36, 115, 148, 188, 247, 365
BssNI	GRCGYC	1 cut(s)	80
Bst2UI	CCWGG	2 cut(s)	65, 77
Bst4CI	ACNGT	1 cut(s)	233
BstACI	GRCGYC	1 cut(s)	80
BstC8I	GCNNGC	1 cut(s)	90
BstDEI	CTNAG	3 cut(s)	137, 152, 373
BstF5I	GGATG	2 cut(s)	162, 368
BstFNI	CGCG	1 cut(s)	551
BstH2I	RGCGCY	1 cut(s)	83
BstHHI	GCGC	1 cut(s)	82
BstKTI	GATC	6 cut(s)	39, 118, 151, 191, 250, 368
BstMAI	GTCTC	3 cut(s)	174, 201, 326
BstMBI	GATC	6 cut(s)	36, 115, 148, 188, 247, 365
BstMWI	GCNNNNNNNGC	2 cut(s)	49, 79
BstNI	CCWGG	2 cut(s)	65, 77
BstNSI	RCATGY	1 cut(s)	214
BstSCI	CCNGG	2 cut(s)	63, 75
BstSFI	CTRYAG	1 cut(s)	9
BstUI	CGCG	1 cut(s)	551
BstX2I	RGATCY	4 cut(s)	36, 148, 188, 247
BstYI	RGATCY	4 cut(s)	36, 148, 188, 247
BsuRI	GGCC	3 cut(s)	43, 133, 464
BtsCI	GGATG	2 cut(s)	162, 368
BtuMI	TCGCGA	1 cut(s)	551
Cac8I	GCNNGC	1 cut(s)	90
CfoI	GCGC	1 cut(s)	82
Cfr13I	GGNCC	3 cut(s)	42, 131, 462
CviAII	CATG	2 cut(s)	46, 211
CviJI	RGCY	9 cut(s)	6, 19, 43, 52, 73, 92, 133, 327, 464
CviKI_1	RGCY	9 cut(s)	6, 19, 43, 52, 73, 92, 133, 327, 464
DdeI	CTNAG	3 cut(s)	137, 152, 373
DinI	GGCGCC	1 cut(s)	81
DpnI	GATC	6 cut(s)	38, 117, 150, 190, 249, 367
DpnII	GATC	6 cut(s)	36, 115, 148, 188, 247, 365
EciI	GGCGGA	1 cut(s)	193
Ecl136II	GAGCTC	1 cut(s)	6
Eco24I	GRGCYC	1 cut(s)	8
Eco32I	GATATC	1 cut(s)	285
Eco53kI	GAGCTC	1 cut(s)	6
Eco57I	CTGAAG	1 cut(s)	272
Eco88I	CYCGRG	1 cut(s)	478
EcoICRI	GAGCTC	1 cut(s)	6
EcoRII	CCWGG	2 cut(s)	63, 75
EcoRV	GATATC	1 cut(s)	285
EcoT38I	GRGCYC	1 cut(s)	8
EgeI	GGCGCC	1 cut(s)	81
EheI	GGCGCC	1 cut(s)	81
FaeI	CATG	2 cut(s)	49, 214
FaiI	YATR	3 cut(s)	47, 212, 540
FaqI	GGGAC	1 cut(s)	176
FatI	CATG	2 cut(s)	45, 210
Fnu4HI	GCNGC	2 cut(s)	134, 176
FokI	GGATG	2 cut(s)	169, 355
FriOI	GRGCYC	1 cut(s)	8
Fsp4HI	GCNGC	2 cut(s)	134, 176
GlaI	GCGC	1 cut(s)	81
GluI	GCNGC	2 cut(s)	134, 176
HaeII	RGCGCY	1 cut(s)	83
HaeIII	GGCC	3 cut(s)	43, 133, 464
HapII	CCGG	1 cut(s)	40
HhaI	GCGC	1 cut(s)	82
Hin1I	GRCGYC	1 cut(s)	80
Hin1II	CATG	2 cut(s)	49, 214
Hin6I	GCGC	1 cut(s)	80
HinP1I	GCGC	1 cut(s)	80
HpaII	CCGG	1 cut(s)	40
HphI	GGTGA	1 cut(s)	272
Hpy188I	TCNGA	5 cut(s)	153, 201, 252, 289, 408
Hpy188III	TCNNGA	4 cut(s)	25, 363, 478, 550
HpyAV	CCTTC	4 cut(s)	98, 247, 431, 435
HpyCH4III	ACNGT	1 cut(s)	233
HpyCH4V	TGCA	3 cut(s)	11, 88, 530
HpyF10VI	GCNNNNNNNGC	2 cut(s)	49, 79
HpyF3I	CTNAG	3 cut(s)	137, 152, 373
Hsp92I	GRCGYC	1 cut(s)	80
Hsp92II	CATG	2 cut(s)	49, 214
HspAI	GCGC	1 cut(s)	80
KasI	GGCGCC	1 cut(s)	79
Kzo9I	GATC	6 cut(s)	36, 115, 148, 188, 247, 365
LmnI	GCTCC	1 cut(s)	324
LpnPI	CCDG	9 cut(s)	50, 53, 62, 77, 89, 199, 409, 445, 497
MalI	GATC	6 cut(s)	38, 117, 150, 190, 249, 367
MboI	GATC	6 cut(s)	36, 115, 148, 188, 247, 365
MboII	GAAGA	7 cut(s)	289, 292, 326, 351, 393, 508, 604
MflI	RGATCY	4 cut(s)	36, 148, 188, 247
MhlI	GDGCHC	1 cut(s)	8
MluCI	AATT	3 cut(s)	455, 515, 596
Mly113I	GGCGCC	1 cut(s)	80
MmeI	TCCRAC	2 cut(s)	358, 540
MspA1I	CMGCKG	1 cut(s)	136
MspI	CCGG	1 cut(s)	40
MspR9I	CCNGG	2 cut(s)	65, 77
MvaI	CCWGG	2 cut(s)	65, 77
MvnI	CGCG	1 cut(s)	551
MwoI	GCNNNNNNNGC	2 cut(s)	49, 79
NarI	GGCGCC	1 cut(s)	80
NdeII	GATC	6 cut(s)	36, 115, 148, 188, 247, 365
NlaIII	CATG	2 cut(s)	49, 214
NlaIV	GGNNCC	1 cut(s)	81
NruI	TCGCGA	1 cut(s)	551
NspI	RCATGY	1 cut(s)	214
PaeR7I	CTCGAG	1 cut(s)	478
PkrI	GCNGC	2 cut(s)	135, 177
PluTI	GGCGCC	1 cut(s)	83
Psp124BI	GAGCTC	1 cut(s)	8
Psp6I	CCWGG	2 cut(s)	63, 75
PspGI	CCWGG	2 cut(s)	63, 75
PspN4I	GGNNCC	1 cut(s)	81
PspPI	GGNCC	3 cut(s)	42, 131, 462
PstI	CTGCAG	1 cut(s)	13
PsuI	RGATCY	4 cut(s)	36, 148, 188, 247
RruI	TCGCGA	1 cut(s)	551
SacI	GAGCTC	1 cut(s)	8
SatI	GCNGC	2 cut(s)	134, 176
Sau3AI	GATC	6 cut(s)	36, 115, 148, 188, 247, 365
Sau96I	GGNCC	3 cut(s)	42, 131, 462
ScrFI	CCNGG	2 cut(s)	65, 77
SduI	GDGCHC	1 cut(s)	8
SetI	ASST	7 cut(s)	8, 21, 54, 66, 94, 109, 329
SfcI	CTRYAG	1 cut(s)	9
SfoI	GGCGCC	1 cut(s)	81
Sfr274I	CTCGAG	1 cut(s)	478
SlaI	CTCGAG	1 cut(s)	478
SmlI	CTYRAG	1 cut(s)	478
SmoI	CTYRAG	1 cut(s)	478
Sse9I	AATT	3 cut(s)	455, 515, 596
SsiI	CCGC	3 cut(s)	134, 175, 178
SspDI	GGCGCC	1 cut(s)	79
SstI	GAGCTC	1 cut(s)	8
StyD4I	CCNGG	2 cut(s)	63, 75
TaaI	ACNGT	1 cut(s)	233
TaqI	TCGA	3 cut(s)	389, 479, 523
TasI	AATT	3 cut(s)	455, 515, 596
TauI	GCSGC	2 cut(s)	136, 178
TspDTI	ATGAA	2 cut(s)	62, 345
XapI	RAATTY	2 cut(s)	455, 596
XceI	RCATGY	1 cut(s)	214
XhoI	CTCGAG	1 cut(s)	478

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.