RchiOBHm_Chr2g0129671

Protein of unknown function (DUF1645)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0002353
Physical Location & Seq
Reverse (-)
45333317 .. 45333745
429 bp
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UTR
Exon/CDS
Intron
PRQ50129

Sequence Viewer

Length: 429 bp
ATGAGGGACAAGTCTCTGCGGCGGAGAACGAGATCCAAGTCTCCCATGAGAAACATGCCCTTTGGTAATAATGACTGTTGCTTTGCGAAAGATCTGAAGGAGGGTGATTTGGGGAAAAAGAAGAAGATACCGGAGAATGGTGAGGAGGAGGAGGAGGAGGAAGAAGTTGGGAGCTTGGAGACTACTCCTTCGGTTTCAGCTTCGTCTTCAAGATCATCCTCAGCTGGAAGAAACTCGAAAAGATGGGTCTTTCTGAAAGATTTTCTCCACAGGAGTAAAAGTGAAGGGAGGAGTAATAACAAATTCTGGGTCACAATCTCATTCTCGAGTAGTGGTAAGGAGAAGAAAATAGAGGTTAGTGTTAGGGGAGAAAATAGGCAGAAAATTGGCTTGTCCGAGACAAGTATTGATCAATGCGGTAGAAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1645

Protein Analysis

142

Amino Acids

16.09

Weight (kDa)

9.67

Isoelectric Point (pI)

70.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1645 PF07816 2 - 121 2e-16 Protein of unknown function (DUF1645)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 19, 22, 417
AclWI GGATC 1 cut(s) 27
AcsI RAATTY 1 cut(s) 302
AcuI CTGAAG 1 cut(s) 116
AfiI CCNNNNNNNGG 1 cut(s) 137
AgsI TTSAA 1 cut(s) 210
AluBI AGCT 3 cut(s) 174, 200, 224
AluI AGCT 3 cut(s) 174, 200, 224
Alw26I GTCTC 4 cut(s) 18, 45, 173, 392
AlwI GGATC 1 cut(s) 27
Ama87I CYCGRG 1 cut(s) 325
ApoI RAATTY 1 cut(s) 302
ArsI GACNNNNNNTTYG 6 cut(s) 65, 97, 172, 204, 294, 326
AsuHPI GGTGA 2 cut(s) 116, 152
AvaI CYCGRG 1 cut(s) 325
BbsI GAAGAC 1 cut(s) 198
BbvCI CCTCAGC 1 cut(s) 220
BccI CCATC 1 cut(s) 237
BclI TGATCA 1 cut(s) 409
BcoDI GTCTC 4 cut(s) 18, 45, 173, 392
BglII AGATCT 1 cut(s) 91
BisI GCNGC 1 cut(s) 20
BlsI GCNGC 1 cut(s) 21
BmeT110I CYCGRG 1 cut(s) 325
BpiI GAAGAC 1 cut(s) 198
Bpu10I CCTNAGC 1 cut(s) 220
BsaWI WCCGGW 1 cut(s) 130
BsaXI ACNNNNNCTCC 2 cut(s) 265, 295
Bsc4I CCNNNNNNNGG 1 cut(s) 137
BseGI GGATG 1 cut(s) 215
BseLI CCNNNNNNNGG 1 cut(s) 137
BseMII CTCAG 1 cut(s) 234
BseRI GAGGAG 6 cut(s) 158, 161, 164, 167, 170, 304
BsiHKCI CYCGRG 1 cut(s) 325
BsiSI CCGG 1 cut(s) 131
BslFI GGGAC 1 cut(s) 20
BslI CCNNNNNNNGG 1 cut(s) 137
BsmAI GTCTC 4 cut(s) 18, 45, 173, 392
BsmFI GGGAC 1 cut(s) 20
BsoBI CYCGRG 1 cut(s) 325
Bsp143I GATC 4 cut(s) 32, 91, 212, 409
BspACI CCGC 3 cut(s) 19, 22, 417
BspCNI CTCAG 1 cut(s) 233
BspPI GGATC 1 cut(s) 27
BssMI GATC 4 cut(s) 32, 91, 212, 409
Bst4CI ACNGT 1 cut(s) 77
BstDEI CTNAG 1 cut(s) 220
BstF5I GGATG 1 cut(s) 215
BstKTI GATC 4 cut(s) 35, 94, 215, 412
BstMAI GTCTC 4 cut(s) 18, 45, 173, 392
BstMBI GATC 4 cut(s) 32, 91, 212, 409
BstNSI RCATGY 1 cut(s) 58
BstV2I GAAGAC 1 cut(s) 198
BstX2I RGATCY 2 cut(s) 32, 91
BstYI RGATCY 2 cut(s) 32, 91
BtsCI GGATG 1 cut(s) 215
CviAII CATG 2 cut(s) 46, 55
CviJI RGCY 4 cut(s) 174, 200, 224, 390
CviKI_1 RGCY 4 cut(s) 174, 200, 224, 390
DdeI CTNAG 1 cut(s) 220
DpnI GATC 4 cut(s) 34, 93, 214, 411
DpnII GATC 4 cut(s) 32, 91, 212, 409
EciI GGCGGA 1 cut(s) 37
Eco57I CTGAAG 1 cut(s) 116
Eco88I CYCGRG 1 cut(s) 325
FaeI CATG 2 cut(s) 49, 58
FaiI YATR 2 cut(s) 47, 56
FaqI GGGAC 1 cut(s) 20
FatI CATG 2 cut(s) 45, 54
FbaI TGATCA 1 cut(s) 409
Fnu4HI GCNGC 1 cut(s) 20
FokI GGATG 1 cut(s) 202
Fsp4HI GCNGC 1 cut(s) 20
GluI GCNGC 1 cut(s) 20
HapII CCGG 1 cut(s) 131
Hin1II CATG 2 cut(s) 49, 58
HpaII CCGG 1 cut(s) 131
HphI GGTGA 2 cut(s) 116, 152
Hpy188I TCNGA 3 cut(s) 96, 255, 397
Hpy188III TCNNGA 2 cut(s) 210, 325
HpyAV CCTTC 3 cut(s) 91, 198, 278
HpyCH4III ACNGT 1 cut(s) 77
HpyF3I CTNAG 1 cut(s) 220
Hsp92II CATG 2 cut(s) 49, 58
Ksp22I TGATCA 1 cut(s) 409
Kzo9I GATC 4 cut(s) 32, 91, 212, 409
LmnI GCTCC 1 cut(s) 171
LpnPI CCDG 4 cut(s) 144, 210, 256, 292
MaeIII GTNAC 1 cut(s) 310
MalI GATC 4 cut(s) 34, 93, 214, 411
MboI GATC 4 cut(s) 32, 91, 212, 409
MboII GAAGA 6 cut(s) 133, 136, 173, 198, 240, 355
MflI RGATCY 2 cut(s) 32, 91
MluCI AATT 2 cut(s) 302, 384
MspA1I CMGCKG 1 cut(s) 224
MspI CCGG 1 cut(s) 131
NdeII GATC 4 cut(s) 32, 91, 212, 409
NlaIII CATG 2 cut(s) 49, 58
NmuCI GTSAC 1 cut(s) 310
NspI RCATGY 1 cut(s) 58
PaeR7I CTCGAG 1 cut(s) 325
PkrI GCNGC 1 cut(s) 21
PsuI RGATCY 2 cut(s) 32, 91
PvuII CAGCTG 1 cut(s) 224
SatI GCNGC 1 cut(s) 20
Sau3AI GATC 4 cut(s) 32, 91, 212, 409
SetI ASST 4 cut(s) 176, 202, 226, 357
Sfr274I CTCGAG 1 cut(s) 325
SlaI CTCGAG 1 cut(s) 325
SmlI CTYRAG 1 cut(s) 325
SmoI CTYRAG 1 cut(s) 325
Sse9I AATT 2 cut(s) 302, 384
SsiI CCGC 3 cut(s) 19, 22, 417
TaaI ACNGT 1 cut(s) 77
TaqI TCGA 2 cut(s) 236, 326
TasI AATT 2 cut(s) 302, 384
TauI GCSGC 1 cut(s) 22
TseFI GTSAC 1 cut(s) 310
Tsp45I GTSAC 1 cut(s) 310
XapI RAATTY 1 cut(s) 302
XceI RCATGY 1 cut(s) 58
XhoI CTCGAG 1 cut(s) 325
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.