Rh1AG132800

Protein of unknown function (DUF1645)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0002353
Physical Location & Seq
Reverse (-)
25502215 .. 25505087
2873 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG132800.1

Sequence Viewer

Length: 474 bp
ATGAGCTCGGCAGATGAGCTGTTCTTGAATAGAAAGATCCGGCCCATGAAGCTCTCCACCCACCTGGAAAAGCCCCAGGCGCCGTTGCAAGCTGTCAACGAGGAAGATGGAGATGATGTATTCGAGTTCGGGCCGCTGAGAGGCAGAGATCTGAGGATGAGGGACAAGTCCCTGCGGCGGAGAACGAGATCCATGTCTCCGATGAGAAACATGCCCTTTGGTAATTCATTCTGTTGCTTTGCGAAAGATCTGAAGGAGGGTGATTTGGGGAAAAAGAAGAAGAAACCGGAGAATGGTGAGGAGGAGGAGGAGGAAGAAGTTGGGAGCTTGGAGACTACTCCTTCGGTTTCAGCTTCGTCTTCAAGATCATCCTCAGCTAGAAGAAACTCGAAAAGATGGGTCTTTCTGAAAGATTTTCTCCACAGGAGTAAAAGTGAAGGGAGGAGTAATAACAAATTCTGGGCCACAATCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1645

Protein Analysis

157

Amino Acids

18.06

Weight (kDa)

9.61

Isoelectric Point (pI)

77.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1645 PF07816 4 - 154 6.3e-27 Protein of unknown function (DUF1645)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 79
AciI CCGC 3 cut(s) 134, 175, 178
AclWI GGATC 2 cut(s) 31, 183
AcsI RAATTY 1 cut(s) 455
AcuI CTGAAG 1 cut(s) 272
AcyI GRCGYC 1 cut(s) 80
AfiI CCNNNNNNNGG 3 cut(s) 140, 177, 293
AgsI TTSAA 2 cut(s) 28, 363
AjnI CCWGG 2 cut(s) 63, 75
AluBI AGCT 7 cut(s) 6, 19, 52, 92, 327, 353, 377
AluI AGCT 7 cut(s) 6, 19, 52, 92, 327, 353, 377
Alw21I GWGCWC 1 cut(s) 8
Alw26I GTCTC 2 cut(s) 201, 326
AlwI GGATC 2 cut(s) 31, 183
AoxI GGCC 3 cut(s) 41, 131, 462
ApoI RAATTY 1 cut(s) 455
ArsI GACNNNNNNTTYG 2 cut(s) 325, 357
AspLEI GCGC 1 cut(s) 82
AspS9I GGNCC 3 cut(s) 42, 131, 462
AsuHPI GGTGA 2 cut(s) 272, 308
BanI GGYRCC 1 cut(s) 79
BanII GRGCYC 1 cut(s) 8
BbsI GAAGAC 1 cut(s) 351
Bbv12I GWGCWC 1 cut(s) 8
BbvCI CCTCAGC 1 cut(s) 373
BccI CCATC 2 cut(s) 101, 390
BceAI ACGGC 1 cut(s) 67
BciT130I CCWGG 2 cut(s) 65, 77
BcoDI GTCTC 2 cut(s) 201, 326
BfaI CTAG 1 cut(s) 378
BfoI RGCGCY 1 cut(s) 83
BglII AGATCT 2 cut(s) 148, 247
BisI GCNGC 2 cut(s) 134, 176
BlsI GCNGC 2 cut(s) 135, 177
Bme1390I CCNGG 2 cut(s) 65, 77
BmgT120I GGNCC 3 cut(s) 42, 131, 462
BmiI GGNNCC 1 cut(s) 81
BmrFI CCNGG 2 cut(s) 65, 77
BpiI GAAGAC 1 cut(s) 351
Bpu10I CCTNAGC 1 cut(s) 373
BsaHI GRCGYC 1 cut(s) 80
BsaJI CCNNGG 1 cut(s) 75
BsaWI WCCGGW 1 cut(s) 286
BsaXI ACNNNNNCTCC 4 cut(s) 102, 132, 418, 448
Bsc4I CCNNNNNNNGG 3 cut(s) 140, 177, 293
BseBI CCWGG 2 cut(s) 65, 77
BseDI CCNNGG 1 cut(s) 75
BseGI GGATG 2 cut(s) 162, 368
BseLI CCNNNNNNNGG 3 cut(s) 140, 177, 293
BseMII CTCAG 3 cut(s) 128, 143, 387
BseRI GAGGAG 5 cut(s) 314, 317, 320, 323, 457
BshFI GGCC 3 cut(s) 43, 133, 464
BshNI GGYRCC 1 cut(s) 79
BsiHKAI GWGCWC 1 cut(s) 8
BsiSI CCGG 2 cut(s) 40, 287
BslFI GGGAC 2 cut(s) 154, 176
BslI CCNNNNNNNGG 3 cut(s) 140, 177, 293
BsmAI GTCTC 2 cut(s) 201, 326
BsmFI GGGAC 2 cut(s) 154, 176
BsnI GGCC 3 cut(s) 43, 133, 464
Bsp1286I GDGCHC 1 cut(s) 8
Bsp143I GATC 5 cut(s) 36, 148, 188, 247, 365
BspACI CCGC 3 cut(s) 134, 175, 178
BspANI GGCC 3 cut(s) 43, 133, 464
BspCNI CTCAG 3 cut(s) 129, 144, 386
BspLI GGNNCC 1 cut(s) 81
BspPI GGATC 2 cut(s) 31, 183
BspT107I GGYRCC 1 cut(s) 79
BssECI CCNNGG 1 cut(s) 75
BssMI GATC 5 cut(s) 36, 148, 188, 247, 365
BssNI GRCGYC 1 cut(s) 80
Bst2UI CCWGG 2 cut(s) 65, 77
BstACI GRCGYC 1 cut(s) 80
BstC8I GCNNGC 1 cut(s) 90
BstDEI CTNAG 3 cut(s) 137, 152, 373
BstF5I GGATG 2 cut(s) 162, 368
BstH2I RGCGCY 1 cut(s) 83
BstHHI GCGC 1 cut(s) 82
BstKTI GATC 5 cut(s) 39, 151, 191, 250, 368
BstMAI GTCTC 2 cut(s) 201, 326
BstMBI GATC 5 cut(s) 36, 148, 188, 247, 365
BstMWI GCNNNNNNNGC 2 cut(s) 49, 79
BstNI CCWGG 2 cut(s) 65, 77
BstNSI RCATGY 1 cut(s) 214
BstSCI CCNGG 2 cut(s) 63, 75
BstV2I GAAGAC 1 cut(s) 351
BstX2I RGATCY 4 cut(s) 36, 148, 188, 247
BstXI CCANNNNNNTGG 1 cut(s) 64
BstYI RGATCY 4 cut(s) 36, 148, 188, 247
BsuRI GGCC 3 cut(s) 43, 133, 464
BtsCI GGATG 2 cut(s) 162, 368
Cac8I GCNNGC 1 cut(s) 90
CfoI GCGC 1 cut(s) 82
Cfr13I GGNCC 3 cut(s) 42, 131, 462
CviAII CATG 3 cut(s) 46, 193, 211
DdeI CTNAG 3 cut(s) 137, 152, 373
DinI GGCGCC 1 cut(s) 81
DpnI GATC 5 cut(s) 38, 150, 190, 249, 367
DpnII GATC 5 cut(s) 36, 148, 188, 247, 365
EciI GGCGGA 1 cut(s) 193
Ecl136II GAGCTC 1 cut(s) 6
Eco24I GRGCYC 1 cut(s) 8
Eco53kI GAGCTC 1 cut(s) 6
Eco57I CTGAAG 1 cut(s) 272
EcoICRI GAGCTC 1 cut(s) 6
EcoRII CCWGG 2 cut(s) 63, 75
EcoT38I GRGCYC 1 cut(s) 8
EgeI GGCGCC 1 cut(s) 81
EheI GGCGCC 1 cut(s) 81
FaeI CATG 3 cut(s) 49, 196, 214
FaiI YATR 3 cut(s) 47, 194, 212
FaqI GGGAC 2 cut(s) 154, 176
FatI CATG 3 cut(s) 45, 192, 210
Fnu4HI GCNGC 2 cut(s) 134, 176
FokI GGATG 2 cut(s) 169, 355
FriOI GRGCYC 1 cut(s) 8
Fsp4HI GCNGC 2 cut(s) 134, 176
FspBI CTAG 1 cut(s) 378
GlaI GCGC 1 cut(s) 81
GluI GCNGC 2 cut(s) 134, 176
HaeII RGCGCY 1 cut(s) 83
HaeIII GGCC 3 cut(s) 43, 133, 464
HapII CCGG 2 cut(s) 40, 287
HhaI GCGC 1 cut(s) 82
Hin1I GRCGYC 1 cut(s) 80
Hin1II CATG 3 cut(s) 49, 196, 214
Hin6I GCGC 1 cut(s) 80
HinP1I GCGC 1 cut(s) 80
HincII GTYRAC 1 cut(s) 97
HindII GTYRAC 1 cut(s) 97
HpaII CCGG 2 cut(s) 40, 287
HphI GGTGA 2 cut(s) 272, 308
Hpy166II GTNNAC 1 cut(s) 97
Hpy188I TCNGA 4 cut(s) 153, 201, 252, 408
Hpy188III TCNNGA 2 cut(s) 25, 363
Hpy8I GTNNAC 1 cut(s) 97
HpyAV CCTTC 3 cut(s) 247, 351, 431
HpyCH4V TGCA 1 cut(s) 88
HpyF10VI GCNNNNNNNGC 2 cut(s) 49, 79
HpyF3I CTNAG 3 cut(s) 137, 152, 373
Hsp92I GRCGYC 1 cut(s) 80
Hsp92II CATG 3 cut(s) 49, 196, 214
HspAI GCGC 1 cut(s) 80
KasI GGCGCC 1 cut(s) 79
Kzo9I GATC 5 cut(s) 36, 148, 188, 247, 365
LmnI GCTCC 1 cut(s) 324
LpnPI CCDG 9 cut(s) 50, 53, 62, 77, 89, 185, 300, 409, 445
MaeI CTAG 1 cut(s) 378
MalI GATC 5 cut(s) 38, 150, 190, 249, 367
MboI GATC 5 cut(s) 36, 148, 188, 247, 365
MboII GAAGA 6 cut(s) 116, 289, 292, 326, 351, 393
MflI RGATCY 4 cut(s) 36, 148, 188, 247
MhlI GDGCHC 1 cut(s) 8
MluCI AATT 2 cut(s) 223, 455
Mly113I GGCGCC 1 cut(s) 80
MspA1I CMGCKG 1 cut(s) 136
MspI CCGG 2 cut(s) 40, 287
MspR9I CCNGG 2 cut(s) 65, 77
MvaI CCWGG 2 cut(s) 65, 77
MwoI GCNNNNNNNGC 2 cut(s) 49, 79
NarI GGCGCC 1 cut(s) 80
NdeII GATC 5 cut(s) 36, 148, 188, 247, 365
NlaIII CATG 3 cut(s) 49, 196, 214
NlaIV GGNNCC 1 cut(s) 81
NspI RCATGY 1 cut(s) 214
PkrI GCNGC 2 cut(s) 135, 177
PluTI GGCGCC 1 cut(s) 83
Psp124BI GAGCTC 1 cut(s) 8
Psp6I CCWGG 2 cut(s) 63, 75
PspGI CCWGG 2 cut(s) 63, 75
PspN4I GGNNCC 1 cut(s) 81
PspPI GGNCC 3 cut(s) 42, 131, 462
PsuI RGATCY 4 cut(s) 36, 148, 188, 247
SacI GAGCTC 1 cut(s) 8
SatI GCNGC 2 cut(s) 134, 176
Sau3AI GATC 5 cut(s) 36, 148, 188, 247, 365
Sau96I GGNCC 3 cut(s) 42, 131, 462
ScrFI CCNGG 2 cut(s) 65, 77
SduI GDGCHC 1 cut(s) 8
SetI ASST 8 cut(s) 8, 21, 54, 66, 94, 329, 355, 379
SfoI GGCGCC 1 cut(s) 81
Sse9I AATT 2 cut(s) 223, 455
SsiI CCGC 3 cut(s) 134, 175, 178
SspDI GGCGCC 1 cut(s) 79
SspMI CTAG 1 cut(s) 378
SstI GAGCTC 1 cut(s) 8
StyD4I CCNGG 2 cut(s) 63, 75
TaqI TCGA 2 cut(s) 123, 389
TasI AATT 2 cut(s) 223, 455
TauI GCSGC 2 cut(s) 136, 178
TspDTI ATGAA 2 cut(s) 62, 216
XapI RAATTY 1 cut(s) 455
XceI RCATGY 1 cut(s) 214
XspI CTAG 1 cut(s) 378
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.