Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002353

Physical Location & Seq

Genomic Coordinates Reverse (-)

5288251 .. 5288910

Gene Structure 660 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ22355

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

ATGGCGGCGTCGGAGTTCGAGTTCTCAGCTCGATTCGGGTCGAATGGATCTACTACTACCGGGCCGATGAGCTCGGTAGATGAGCTGTTCTTGAATGGAAAGATCCAGGCCATGAAGCTCTCCACCCACCTGGAAAAGCCCCAGGTACCGTTGCAAGCTGTCAACGAGGAAGATGGAGATGATCTATTCGAGTTCGGGCCACTGAGAGGCAGAGATCTGAGGATGAGGGACAAGTCTTTGCGGCGGAGAACGAGATCCATGTCTCCGATGAGAAACATGCCCTTTGGTAATAATGACTGTTGCTTTGCAAAAGATCTGAAGGAGGGTGATTTGGGGAAGAAGAAGAAGAAGAAGAAGAAACCGGAGAATGGTGAGGAGGAGGAGGAGGAGGAAGAAGTTGGGAGCTTGGAGACCATTCCTTCAGTTTCAGCTTCGTCTTCAAGATCATCCTCAGTTGGAAGAAACTCGAAAAGATGGGTCTTTCTGAAAGATTTTCTCCACAGCAGTAAAAGTGAAGGGAGGAGTAATAACAAATTCTGGGCCACAATCTCATTCTCGAGTAGTGGTAAGGAGAAGAAAATAGAGGTAAGTGTTGGGGGAGAAAATAGGAAGAAAATTGGCTCGTCCGAGACAAGTGTTGATCGATGCGGCAGAAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1645

Protein Analysis

219

Amino Acids

24.43

Weight (kDa)

9.3

Isoelectric Point (pI)

56.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF1645	PF07816	27 - 197	2.4e-24	Protein of unknown function (DUF1645)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002353)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G62630
fragaria_vesca	FvH4_6g07220 FvH4_6g07220 FvH4_6g07220
malus_domestica	MD04G1195400.v1.1 MD12G1207500.v1.1
prunus_persica	Prupe.6G315100_v2.0.a1
pyrus_communis	pycom04g17260 pycom12g19510 pycom15g32780
rosa_chinensis	RchiOBHm_Chr1g0333511 RchiOBHm_Chr1g0352421 RchiOBHm_Chr2g0129671 RchiOBHm_Chr3g0456851 RchiOBHm_Chr5g0038721 RchiOBHm_Chr6g0249361
rosa_laevigata	RLG00000023272 RLG00000025274
rosa_multiflora	Rmu_co8019462.1_g000001 Rmu_sc0000133.1_g000019 Rmu_sc0000741.1_g000014 Rmu_sc0001016.1_g000061 Rmu_sc0001890.1_g000010 Rmu_sc0002095.1_g000008 Rmu_sc0002955.1_g000021 Rmu_sc0005500.1_g000015 Rmu_sc0010617.1_g000006 Rmu_sc0020548.1_g000004 Rmu_sc0020548.1_g000005 Rmu_sc0033338.1_g000001
rosa_roxburghii	Rroxscaffold_3G00223580 Rroxscaffold_6G00422440
rosa_rugosa	Rorug03G0016400
rosa_samantha	Rh1AG132800 Rh1AG157400 Rh1CG147200 Rh3AG076700 Rh3BG078500 Rh3CG078300 Rh3DG080300 Rh4DG243900
rosa_wichuraiana	Rw3G006580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	145
AccB1I	GGYRCC	1 cut(s)	145
AciI	CCGC	4 cut(s)	5, 241, 244, 648
AclWI	GGATC	3 cut(s)	55, 97, 249
AcsI	RAATTY	1 cut(s)	533
AcuI	CTGAAG	2 cut(s)	338, 405
AcyI	GRCGYC	1 cut(s)	8
AfaI	GTAC	1 cut(s)	147
AfiI	CCNNNNNNNGG	2 cut(s)	206, 368
AgsI	TTSAA	2 cut(s)	94, 441
AjnI	CCWGG	3 cut(s)	105, 129, 141
AloI	GAACNNNNNNTCC	1 cut(s)	37
AluBI	AGCT	7 cut(s)	29, 72, 85, 118, 158, 405, 431
AluI	AGCT	7 cut(s)	29, 72, 85, 118, 158, 405, 431
Alw21I	GWGCWC	1 cut(s)	74
Alw26I	GTCTC	3 cut(s)	267, 404, 623
AlwI	GGATC	3 cut(s)	55, 97, 249
Ama87I	CYCGRG	1 cut(s)	556
AoxI	GGCC	4 cut(s)	62, 108, 197, 540
ApoI	RAATTY	1 cut(s)	533
ArsI	GACNNNNNNTTYG	2 cut(s)	287, 319
Asp718I	GGTACC	1 cut(s)	145
AspS9I	GGNCC	3 cut(s)	62, 197, 540
AsuC2I	CCSGG	1 cut(s)	61
AsuHPI	GGTGA	2 cut(s)	338, 383
AvaI	CYCGRG	1 cut(s)	556
BanI	GGYRCC	1 cut(s)	145
BanII	GRGCYC	1 cut(s)	74
BbsI	GAAGAC	1 cut(s)	429
Bbv12I	GWGCWC	1 cut(s)	74
BccI	CCATC	2 cut(s)	167, 468
BciT130I	CCWGG	3 cut(s)	107, 131, 143
BcnI	CCSGG	1 cut(s)	61
BcoDI	GTCTC	3 cut(s)	267, 404, 623
BglII	AGATCT	2 cut(s)	214, 313
BisI	GCNGC	3 cut(s)	6, 242, 649
BlsI	GCNGC	3 cut(s)	7, 243, 650
Bme1390I	CCNGG	4 cut(s)	61, 107, 131, 143
BmeT110I	CYCGRG	1 cut(s)	556
BmgT120I	GGNCC	3 cut(s)	62, 197, 540
BmiI	GGNNCC	1 cut(s)	147
BmrFI	CCNGG	4 cut(s)	61, 107, 131, 143
BmsI	GCATC	1 cut(s)	635
BpiI	GAAGAC	1 cut(s)	429
BpuMI	CCSGG	1 cut(s)	61
Bsa29I	ATCGAT	1 cut(s)	643
BsaHI	GRCGYC	1 cut(s)	8
BsaI	GGTCTC	1 cut(s)	404
BsaJI	CCNNGG	1 cut(s)	141
BsaWI	WCCGGW	1 cut(s)	361
BsaXI	ACNNNNNCTCC	2 cut(s)	5, 35
Bsc4I	CCNNNNNNNGG	2 cut(s)	206, 368
BseBI	CCWGG	3 cut(s)	107, 131, 143
BseCI	ATCGAT	1 cut(s)	643
BseDI	CCNNGG	1 cut(s)	141
BseGI	GGATG	2 cut(s)	228, 446
BseLI	CCNNNNNNNGG	2 cut(s)	206, 368
BseMII	CTCAG	4 cut(s)	39, 194, 209, 465
BseRI	GAGGAG	6 cut(s)	389, 392, 395, 398, 401, 535
BshFI	GGCC	4 cut(s)	64, 110, 199, 542
BshNI	GGYRCC	1 cut(s)	145
BshVI	ATCGAT	1 cut(s)	643
BsiHKAI	GWGCWC	1 cut(s)	74
BsiHKCI	CYCGRG	1 cut(s)	556
BsiSI	CCGG	2 cut(s)	60, 362
BslFI	GGGAC	1 cut(s)	242
BslI	CCNNNNNNNGG	2 cut(s)	206, 368
BsmAI	GTCTC	3 cut(s)	267, 404, 623
BsmFI	GGGAC	1 cut(s)	242
BsnI	GGCC	4 cut(s)	64, 110, 199, 542
Bso31I	GGTCTC	1 cut(s)	404
BsoBI	CYCGRG	1 cut(s)	556
Bsp1286I	GDGCHC	1 cut(s)	74
Bsp143I	GATC	8 cut(s)	47, 102, 181, 214, 254, 313, 443, 640
BspACI	CCGC	4 cut(s)	5, 241, 244, 648
BspANI	GGCC	4 cut(s)	64, 110, 199, 542
BspCNI	CTCAG	4 cut(s)	38, 195, 210, 464
BspDI	ATCGAT	1 cut(s)	643
BspLI	GGNNCC	1 cut(s)	147
BspPI	GGATC	3 cut(s)	55, 97, 249
BspT107I	GGYRCC	1 cut(s)	145
BspTNI	GGTCTC	1 cut(s)	404
BssECI	CCNNGG	1 cut(s)	141
BssMI	GATC	8 cut(s)	47, 102, 181, 214, 254, 313, 443, 640
BssNI	GRCGYC	1 cut(s)	8
Bst2UI	CCWGG	3 cut(s)	107, 131, 143
Bst4CI	ACNGT	2 cut(s)	150, 299
BstACI	GRCGYC	1 cut(s)	8
BstC8I	GCNNGC	1 cut(s)	156
BstDEI	CTNAG	4 cut(s)	25, 203, 218, 451
BstF5I	GGATG	2 cut(s)	228, 446
BstKTI	GATC	8 cut(s)	50, 105, 184, 217, 257, 316, 446, 643
BstMAI	GTCTC	3 cut(s)	267, 404, 623
BstMBI	GATC	8 cut(s)	47, 102, 181, 214, 254, 313, 443, 640
BstNI	CCWGG	3 cut(s)	107, 131, 143
BstNSI	RCATGY	1 cut(s)	280
BstSCI	CCNGG	4 cut(s)	59, 105, 129, 141
BstV2I	GAAGAC	1 cut(s)	429
BstX2I	RGATCY	5 cut(s)	47, 102, 214, 254, 313
BstXI	CCANNNNNNTGG	1 cut(s)	130
BstYI	RGATCY	5 cut(s)	47, 102, 214, 254, 313
Bsu15I	ATCGAT	1 cut(s)	643
BsuRI	GGCC	4 cut(s)	64, 110, 199, 542
BsuTUI	ATCGAT	1 cut(s)	643
BtsCI	GGATG	2 cut(s)	228, 446
BtsIMutI	CAGTG	1 cut(s)	200
Cac8I	GCNNGC	1 cut(s)	156
Cfr13I	GGNCC	3 cut(s)	62, 197, 540
ClaI	ATCGAT	1 cut(s)	643
Csp6I	GTAC	1 cut(s)	146
CviAII	CATG	3 cut(s)	112, 259, 277
CviQI	GTAC	1 cut(s)	146
DdeI	CTNAG	4 cut(s)	25, 203, 218, 451
DpnI	GATC	8 cut(s)	49, 104, 183, 216, 256, 315, 445, 642
DpnII	GATC	8 cut(s)	47, 102, 181, 214, 254, 313, 443, 640
EciI	GGCGGA	1 cut(s)	259
Ecl136II	GAGCTC	1 cut(s)	72
Eco24I	GRGCYC	1 cut(s)	74
Eco31I	GGTCTC	1 cut(s)	404
Eco53kI	GAGCTC	1 cut(s)	72
Eco57I	CTGAAG	2 cut(s)	338, 405
Eco88I	CYCGRG	1 cut(s)	556
EcoICRI	GAGCTC	1 cut(s)	72
EcoRII	CCWGG	3 cut(s)	105, 129, 141
EcoT38I	GRGCYC	1 cut(s)	74
FaeI	CATG	3 cut(s)	115, 262, 280
FaiI	YATR	3 cut(s)	113, 260, 278
FaqI	GGGAC	1 cut(s)	242
FatI	CATG	3 cut(s)	111, 258, 276
Fnu4HI	GCNGC	3 cut(s)	6, 242, 649
FokI	GGATG	2 cut(s)	235, 433
FriOI	GRGCYC	1 cut(s)	74
Fsp4HI	GCNGC	3 cut(s)	6, 242, 649
GluI	GCNGC	3 cut(s)	6, 242, 649
HaeIII	GGCC	4 cut(s)	64, 110, 199, 542
HapII	CCGG	2 cut(s)	60, 362
Hin1I	GRCGYC	1 cut(s)	8
Hin1II	CATG	3 cut(s)	115, 262, 280
HincII	GTYRAC	1 cut(s)	163
HindII	GTYRAC	1 cut(s)	163
HinfI	GANTC	1 cut(s)	33
HpaII	CCGG	2 cut(s)	60, 362
HphI	GGTGA	2 cut(s)	338, 383
Hpy166II	GTNNAC	1 cut(s)	163
Hpy188I	TCNGA	6 cut(s)	13, 219, 267, 318, 486, 628
Hpy188III	TCNNGA	3 cut(s)	91, 441, 556
Hpy8I	GTNNAC	1 cut(s)	163
Hpy99I	CGWCG	1 cut(s)	13
HpyAV	CCTTC	3 cut(s)	313, 429, 509
HpyCH4III	ACNGT	2 cut(s)	150, 299
HpyCH4V	TGCA	2 cut(s)	154, 308
HpyF3I	CTNAG	4 cut(s)	25, 203, 218, 451
Hsp92I	GRCGYC	1 cut(s)	8
Hsp92II	CATG	3 cut(s)	115, 262, 280
KpnI	GGTACC	1 cut(s)	149
Kzo9I	GATC	8 cut(s)	47, 102, 181, 214, 254, 313, 443, 640
LmnI	GCTCC	1 cut(s)	402
LpnPI	CCDG	9 cut(s)	73, 92, 116, 119, 128, 143, 155, 375, 523
LweI	GCATC	1 cut(s)	635
MalI	GATC	8 cut(s)	49, 104, 183, 216, 256, 315, 445, 642
MboI	GATC	8 cut(s)	47, 102, 181, 214, 254, 313, 443, 640
MflI	RGATCY	5 cut(s)	47, 102, 214, 254, 313
MhlI	GDGCHC	1 cut(s)	74
MluCI	AATT	2 cut(s)	533, 615
MmeI	TCCRAC	1 cut(s)	436
MspI	CCGG	2 cut(s)	60, 362
MspR9I	CCNGG	4 cut(s)	61, 107, 131, 143
MvaI	CCWGG	3 cut(s)	107, 131, 143
NciI	CCSGG	1 cut(s)	61
NdeII	GATC	8 cut(s)	47, 102, 181, 214, 254, 313, 443, 640
NlaIII	CATG	3 cut(s)	115, 262, 280
NlaIV	GGNNCC	1 cut(s)	147
NspI	RCATGY	1 cut(s)	280
PaeR7I	CTCGAG	1 cut(s)	556
PfeI	GAWTC	1 cut(s)	33
PkrI	GCNGC	3 cut(s)	7, 243, 650
Psp124BI	GAGCTC	1 cut(s)	74
Psp6I	CCWGG	3 cut(s)	105, 129, 141
PspGI	CCWGG	3 cut(s)	105, 129, 141
PspN4I	GGNNCC	1 cut(s)	147
PspPI	GGNCC	3 cut(s)	62, 197, 540
PsuI	RGATCY	5 cut(s)	47, 102, 214, 254, 313
RsaI	GTAC	1 cut(s)	147
RsaNI	GTAC	1 cut(s)	146
SacI	GAGCTC	1 cut(s)	74
SatI	GCNGC	3 cut(s)	6, 242, 649
Sau3AI	GATC	8 cut(s)	47, 102, 181, 214, 254, 313, 443, 640
Sau96I	GGNCC	3 cut(s)	62, 197, 540
ScrFI	CCNGG	4 cut(s)	61, 107, 131, 143
SduI	GDGCHC	1 cut(s)	74
SfaNI	GCATC	1 cut(s)	635
Sfr274I	CTCGAG	1 cut(s)	556
SlaI	CTCGAG	1 cut(s)	556
SmlI	CTYRAG	1 cut(s)	556
SmoI	CTYRAG	1 cut(s)	556
Sse9I	AATT	2 cut(s)	533, 615
SsiI	CCGC	4 cut(s)	5, 241, 244, 648
SstI	GAGCTC	1 cut(s)	74
StyD4I	CCNGG	4 cut(s)	59, 105, 129, 141
TaaI	ACNGT	2 cut(s)	150, 299
TaqI	TCGA	7 cut(s)	18, 31, 41, 189, 467, 557, 643
TasI	AATT	2 cut(s)	533, 615
TauI	GCSGC	3 cut(s)	8, 244, 651
TfiI	GAWTC	1 cut(s)	33
TscAI	CASTG	1 cut(s)	207
TspDTI	ATGAA	1 cut(s)	128
TspRI	CASTG	1 cut(s)	207
XapI	RAATTY	1 cut(s)	533
XceI	RCATGY	1 cut(s)	280
XhoI	CTCGAG	1 cut(s)	556

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.